Gchil2055.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2055.t1
Unique NameGchil2055.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:320589..321260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708239.1
Preferred nameRER1
PFAMsRer1
Max annot lvl2759|Eukaryota
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
Evalue4.52e-37
EggNOG OGsCOG5249@1|root,KOG1688@2759|Eukaryota
Descriptionretrograde vesicle-mediated transport, Golgi to ER
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2055Gchil2055Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 320589..321260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2055.t1.stop1Gchil2055.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 320589..320591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2055.t1.CDS1Gchil2055.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 320589..321260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2055.t1.exon1Gchil2055.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 320589..321260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2055.t1.start1Gchil2055.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 321258..321260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2055.t1Gchil2055.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 320589..321260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2055.t1 ID=Gchil2055.t1|Name=Gchil2055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=224bp
MAALDRRMQHLLDRVAPHKLYRWLALVVLLALFLLRTFLLEGFYIVIYVL
FIFILNQFILFLQPKDRASLLARAAVRSIDDAADDDDDDQRRAPTLPTDD
ADEFRPFVRRLPEFKFWYSTTYATLLAFGATFFNVFDVPVFWPVLLFYFV
MLFVATMRRQWLDMKHLKYVPWDIGTKKVYKSDPKRVSVTRPHPQPSPLP
SSAPPRAVPVPTVPINKTPALSQ*
back to top

spliced messenger RNA

>Gchil2055.t1 ID=Gchil2055.t1|Name=Gchil2055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000019_pilon:320589..321260- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCTCGACCGTCGCATGCAACATTTGTTGGACCGCGTCGCGCC
ACACAAGTTATATCGTTGGCTCGCACTCGTCGTGCTGTTGGCGCTCTTTC
TGTTGCGAACCTTTCTCTTGGAGGGCTTTTACATTGTCATTTACGTGCTT
TTCATCTTCATTCTCAACCAGTTCATTCTGTTCCTGCAGCCCAAGGACCG
CGCGTCGCTTCTTGCGCGCGCTGCTGTGCGTTCTATCGATGACGCTGCCG
ATGACGACGACGACGATCAGCGCCGAGCGCCCACGCTGCCCACCGACGAC
GCCGATGAATTTCGTCCGTTTGTGCGCCGTCTCCCGGAGTTCAAGTTCTG
GTACTCCACCACGTACGCCACGCTGCTGGCCTTTGGCGCCACCTTCTTCA
ACGTTTTTGACGTTCCGGTCTTCTGGCCGGTGCTGCTCTTCTACTTTGTC
ATGCTGTTTGTTGCCACCATGAGAAGGCAGTGGCTGGACATGAAGCACCT
CAAGTACGTCCCGTGGGACATTGGCACTAAAAAGGTCTACAAGTCCGACC
CTAAGCGTGTCAGTGTCACCAGGCCCCACCCTCAACCCTCGCCGTTGCCA
TCCTCCGCACCGCCGAGAGCCGTGCCGGTGCCCACTGTCCCAATCAACAA
AACGCCCGCCCTCTCACAGTAA
back to top

protein sequence of Gchil2055.t1

>Gchil2055.t1 ID=Gchil2055.t1|Name=Gchil2055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=224bp
MAALDRRMQHLLDRVAPHKLYRWLALVVLLALFLLRTFLLEGFYIVIYVL
FIFILNQFILFLQPKDRASLLARAAVRSIDDAADDDDDDQRRAPTLPTDD
ADEFRPFVRRLPEFKFWYSTTYATLLAFGATFFNVFDVPVFWPVLLFYFV
MLFVATMRRQWLDMKHLKYVPWDIGTKKVYKSDPKRVSVTRPHPQPSPLP
SSAPPRAVPVPTVPINKTPALSQ*
back to top

mRNA from alignment at tig00000019_pilon:320589..321260-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2055.t1 ID=Gchil2055.t1|Name=Gchil2055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000019_pilon:320589..321260- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGCTCGACCGTCGCATGCAACATTTGTTGGACCGCGTCGCGCC
ACACAAGTTATATCGTTGGCTCGCACTCGTCGTGCTGTTGGCGCTCTTTC
TGTTGCGAACCTTTCTCTTGGAGGGCTTTTACATTGTCATTTACGTGCTT
TTCATCTTCATTCTCAACCAGTTCATTCTGTTCCTGCAGCCCAAGGACCG
CGCGTCGCTTCTTGCGCGCGCTGCTGTGCGTTCTATCGATGACGCTGCCG
ATGACGACGACGACGATCAGCGCCGAGCGCCCACGCTGCCCACCGACGAC
GCCGATGAATTTCGTCCGTTTGTGCGCCGTCTCCCGGAGTTCAAGTTCTG
GTACTCCACCACGTACGCCACGCTGCTGGCCTTTGGCGCCACCTTCTTCA
ACGTTTTTGACGTTCCGGTCTTCTGGCCGGTGCTGCTCTTCTACTTTGTC
ATGCTGTTTGTTGCCACCATGAGAAGGCAGTGGCTGGACATGAAGCACCT
CAAGTACGTCCCGTGGGACATTGGCACTAAAAAGGTCTACAAGTCCGACC
CTAAGCGTGTCAGTGTCACCAGGCCCCACCCTCAACCCTCGCCGTTGCCA
TCCTCCGCACCGCCGAGAGCCGTGCCGGTGCCCACTGTCCCAATCAACAA
AACGCCCGCCCTCTCACAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000019_pilon:320589..321260-

>Gchil2055.t1 ID=Gchil2055.t1|Name=Gchil2055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000019_pilon:320589..321260- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGCTCGACCGTCGCATGCAACATTTGTTGGACCGCGTCGCGCC
ACACAAGTTATATCGTTGGCTCGCACTCGTCGTGCTGTTGGCGCTCTTTC
TGTTGCGAACCTTTCTCTTGGAGGGCTTTTACATTGTCATTTACGTGCTT
TTCATCTTCATTCTCAACCAGTTCATTCTGTTCCTGCAGCCCAAGGACCG
CGCGTCGCTTCTTGCGCGCGCTGCTGTGCGTTCTATCGATGACGCTGCCG
ATGACGACGACGACGATCAGCGCCGAGCGCCCACGCTGCCCACCGACGAC
GCCGATGAATTTCGTCCGTTTGTGCGCCGTCTCCCGGAGTTCAAGTTCTG
GTACTCCACCACGTACGCCACGCTGCTGGCCTTTGGCGCCACCTTCTTCA
ACGTTTTTGACGTTCCGGTCTTCTGGCCGGTGCTGCTCTTCTACTTTGTC
ATGCTGTTTGTTGCCACCATGAGAAGGCAGTGGCTGGACATGAAGCACCT
CAAGTACGTCCCGTGGGACATTGGCACTAAAAAGGTCTACAAGTCCGACC
CTAAGCGTGTCAGTGTCACCAGGCCCCACCCTCAACCCTCGCCGTTGCCA
TCCTCCGCACCGCCGAGAGCCGTGCCGGTGCCCACTGTCCCAATCAACAA
AACGCCCGCCCTCTCACAGTAA
back to top