Gchil7717.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7717.t1
Unique Name	Gchil7717.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025321_pilon	contig	tig00025321_pilon:502675..503652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	52598.EE36_10095
Preferred name	dhaA
PFAMs	Abhydrolase_1,Abhydrolase_6
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC01317,RC01340,RC01341,RC02013
KEGG ko	ko:K01563
KEGG Reaction	R05284,R05367,R05368,R05369,R05370,R07669,R07670
KEGG Pathway	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120
Evalue	3.39e-122
EggNOG OGs	COG0596@1\|root,COG0596@2\|Bacteria,1R4ZX@1224\|Proteobacteria,2TU6R@28211\|Alphaproteobacteria
EC	3.8.1.5
Description	Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7717	Gchil7717	Gracilaria chilensis NLEC103_M9 male	gene	tig00025321_pilon 502675..503652 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7717.t1.start1	Gchil7717.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025321_pilon 502675..502677 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7717.t1.CDS1	Gchil7717.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025321_pilon 502675..503652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7717.t1.exon1	Gchil7717.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025321_pilon 502675..503652 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7717.t1.stop1	Gchil7717.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025321_pilon 503650..503652 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7717.t1	Gchil7717.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025321_pilon 502675..503652 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025321_pilon:502675..503652+
coding sequence from alignment at tig00025321_pilon:502675..503652+

mRNA sequence

>Gchil7717.t1 ID=Gchil7717.t1|Name=Gchil7717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MVPIHHRFVVCLTAFLIVFVCLKHSASATNDPPTRFVTKKFKTIAGKRMA
YVEVGNGDPIVFLHGNPTSSYLWRNIMPHLEGKGRLIAPDLIGMGDSDKL
DFSGPDRYTVVEHSNYLYQLLEALDVKQNITFVIHDWGSTLGFWWAYYNR
GNPDAVKAIAFFESLVTPYRTDTFSPQLLDLFTQLRSPAGDELVLNQNLF
IEELLPSAIIRRLSASELDEYRRPFLNAGEDRRPTLTFPRQIPIDGVPVD
VNNIIETYSRWLTTSNIPKLFIKGDPGLVITNGSEALEVVHSFPELTEVS
VEGIHYLQEDSPDEIGMAIAEWLPA*

spliced messenger RNA

>Gchil7717.t1 ID=Gchil7717.t1|Name=Gchil7717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00025321_pilon:502675..503652+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCCATCCATCATCGTTTCGTAGTCTGTCTTACCGCTTTCCTTAT
CGTTTTCGTTTGCTTGAAACATTCTGCTAGCGCCACAAATGATCCACCTA
CCCGTTTCGTGACGAAAAAGTTCAAGACCATAGCTGGAAAGAGAATGGCC
TACGTCGAGGTTGGAAACGGCGATCCGATCGTGTTTTTGCACGGTAATCC
GACCTCATCTTACCTGTGGAGAAATATCATGCCACACTTGGAAGGAAAGG
GCCGGCTGATTGCTCCAGATCTCATTGGCATGGGTGACTCAGATAAGCTA
GATTTCAGCGGACCTGACCGTTATACCGTTGTGGAGCACTCAAACTACCT
CTACCAGCTACTGGAAGCGCTTGATGTCAAGCAGAACATCACTTTTGTCA
TCCATGATTGGGGATCTACCCTCGGATTCTGGTGGGCGTACTACAATCGT
GGCAACCCAGATGCAGTGAAGGCAATTGCATTCTTTGAAAGTTTGGTGAC
TCCATACCGAACGGATACTTTTTCGCCTCAGCTTTTGGATCTCTTCACCC
AGCTTCGGTCTCCTGCTGGAGATGAGCTAGTTTTAAATCAGAATTTATTC
ATTGAGGAACTTTTACCAAGTGCCATCATACGTCGGCTCTCTGCAAGCGA
GCTGGATGAGTATCGTCGTCCGTTTCTAAATGCTGGAGAAGATCGGCGAC
CAACCCTTACGTTTCCGAGACAGATACCCATAGATGGGGTCCCAGTTGAT
GTGAATAACATAATTGAAACCTACTCTCGATGGTTGACGACGTCTAACAT
CCCCAAACTTTTCATTAAGGGTGATCCGGGGCTTGTAATCACCAATGGTT
CAGAGGCTCTGGAGGTTGTCCATTCCTTTCCTGAGCTCACCGAAGTTTCC
GTAGAAGGGATTCACTACCTTCAAGAAGATTCCCCGGATGAGATTGGCAT
GGCTATTGCGGAGTGGTTGCCTGCATAA

protein sequence of Gchil7717.t1

>Gchil7717.t1 ID=Gchil7717.t1|Name=Gchil7717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MVPIHHRFVVCLTAFLIVFVCLKHSASATNDPPTRFVTKKFKTIAGKRMA
YVEVGNGDPIVFLHGNPTSSYLWRNIMPHLEGKGRLIAPDLIGMGDSDKL
DFSGPDRYTVVEHSNYLYQLLEALDVKQNITFVIHDWGSTLGFWWAYYNR
GNPDAVKAIAFFESLVTPYRTDTFSPQLLDLFTQLRSPAGDELVLNQNLF
IEELLPSAIIRRLSASELDEYRRPFLNAGEDRRPTLTFPRQIPIDGVPVD
VNNIIETYSRWLTTSNIPKLFIKGDPGLVITNGSEALEVVHSFPELTEVS
VEGIHYLQEDSPDEIGMAIAEWLPA*

mRNA from alignment at tig00025321_pilon:502675..503652+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7717.t1 ID=Gchil7717.t1|Name=Gchil7717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00025321_pilon:502675..503652+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCCATCCATCATCGTTTCGTAGTCTGTCTTACCGCTTTCCTTAT
CGTTTTCGTTTGCTTGAAACATTCTGCTAGCGCCACAAATGATCCACCTA
CCCGTTTCGTGACGAAAAAGTTCAAGACCATAGCTGGAAAGAGAATGGCC
TACGTCGAGGTTGGAAACGGCGATCCGATCGTGTTTTTGCACGGTAATCC
GACCTCATCTTACCTGTGGAGAAATATCATGCCACACTTGGAAGGAAAGG
GCCGGCTGATTGCTCCAGATCTCATTGGCATGGGTGACTCAGATAAGCTA
GATTTCAGCGGACCTGACCGTTATACCGTTGTGGAGCACTCAAACTACCT
CTACCAGCTACTGGAAGCGCTTGATGTCAAGCAGAACATCACTTTTGTCA
TCCATGATTGGGGATCTACCCTCGGATTCTGGTGGGCGTACTACAATCGT
GGCAACCCAGATGCAGTGAAGGCAATTGCATTCTTTGAAAGTTTGGTGAC
TCCATACCGAACGGATACTTTTTCGCCTCAGCTTTTGGATCTCTTCACCC
AGCTTCGGTCTCCTGCTGGAGATGAGCTAGTTTTAAATCAGAATTTATTC
ATTGAGGAACTTTTACCAAGTGCCATCATACGTCGGCTCTCTGCAAGCGA
GCTGGATGAGTATCGTCGTCCGTTTCTAAATGCTGGAGAAGATCGGCGAC
CAACCCTTACGTTTCCGAGACAGATACCCATAGATGGGGTCCCAGTTGAT
GTGAATAACATAATTGAAACCTACTCTCGATGGTTGACGACGTCTAACAT
CCCCAAACTTTTCATTAAGGGTGATCCGGGGCTTGTAATCACCAATGGTT
CAGAGGCTCTGGAGGTTGTCCATTCCTTTCCTGAGCTCACCGAAGTTTCC
GTAGAAGGGATTCACTACCTTCAAGAAGATTCCCCGGATGAGATTGGCAT
GGCTATTGCGGAGTGGTTGCCTGCATAA

Coding sequence (CDS) from alignment at tig00025321_pilon:502675..503652+

>Gchil7717.t1 ID=Gchil7717.t1|Name=Gchil7717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00025321_pilon:502675..503652+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCCATCCATCATCGTTTCGTAGTCTGTCTTACCGCTTTCCTTAT
CGTTTTCGTTTGCTTGAAACATTCTGCTAGCGCCACAAATGATCCACCTA
CCCGTTTCGTGACGAAAAAGTTCAAGACCATAGCTGGAAAGAGAATGGCC
TACGTCGAGGTTGGAAACGGCGATCCGATCGTGTTTTTGCACGGTAATCC
GACCTCATCTTACCTGTGGAGAAATATCATGCCACACTTGGAAGGAAAGG
GCCGGCTGATTGCTCCAGATCTCATTGGCATGGGTGACTCAGATAAGCTA
GATTTCAGCGGACCTGACCGTTATACCGTTGTGGAGCACTCAAACTACCT
CTACCAGCTACTGGAAGCGCTTGATGTCAAGCAGAACATCACTTTTGTCA
TCCATGATTGGGGATCTACCCTCGGATTCTGGTGGGCGTACTACAATCGT
GGCAACCCAGATGCAGTGAAGGCAATTGCATTCTTTGAAAGTTTGGTGAC
TCCATACCGAACGGATACTTTTTCGCCTCAGCTTTTGGATCTCTTCACCC
AGCTTCGGTCTCCTGCTGGAGATGAGCTAGTTTTAAATCAGAATTTATTC
ATTGAGGAACTTTTACCAAGTGCCATCATACGTCGGCTCTCTGCAAGCGA
GCTGGATGAGTATCGTCGTCCGTTTCTAAATGCTGGAGAAGATCGGCGAC
CAACCCTTACGTTTCCGAGACAGATACCCATAGATGGGGTCCCAGTTGAT
GTGAATAACATAATTGAAACCTACTCTCGATGGTTGACGACGTCTAACAT
CCCCAAACTTTTCATTAAGGGTGATCCGGGGCTTGTAATCACCAATGGTT
CAGAGGCTCTGGAGGTTGTCCATTCCTTTCCTGAGCTCACCGAAGTTTCC
GTAGAAGGGATTCACTACCTTCAAGAAGATTCCCCGGATGAGATTGGCAT
GGCTATTGCGGAGTGGTTGCCTGCATAA