Gchil7737.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7737.t1
Unique NameGchil7737.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:851857..852729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59689.fgenesh2_kg.7__473__AT4G35970.1
PFAMsperoxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005777,GO:0005778,GO:0005911,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009636,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016020,GO:0016209,GO:0016491,GO:0016684,GO:0016688,GO:0016999,GO:0017001,GO:0017144,GO:0030054,GO:0031090,GO:0031903,GO:0031967,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0042579,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098588,GO:0098754,GO:0098805,GO:0098869,GO:1901700,GO:1990748
Evalue2.28e-17
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota,37RD2@33090|Viridiplantae,3G8JX@35493|Streptophyta,3HW7Q@3699|Brassicales
EC1.11.1.11
DescriptionBelongs to the peroxidase family
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7737Gchil7737Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 851857..852729 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7737.t1.stop1Gchil7737.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 851857..851859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7737.t1.CDS1Gchil7737.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 851857..852729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7737.t1.exon1Gchil7737.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 851857..852729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7737.t1.start1Gchil7737.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 852727..852729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7737.t1Gchil7737.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 851857..852729 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7737.t1 ID=Gchil7737.t1|Name=Gchil7737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MVHRLCVLLLLSAALLHLVTATYSNCYYAHHKIRELLVEGMKEDPDLIPA
FSRAAFHDCITATKAKPKSGCNGSLRLKDEITNMDNDRLQPPLDFLRKHL
PTIENQKCASFADGIQLGAEVAMKVSNGPNVIGKLVRSVSPRKDVDEPDT
VDGELPNENDPFQKLKEFFARKGFNVREMIVANVGGHALGAFVDDDDDQD
KPFTTTENEFNIDYAVNLVQRIDTGVNLEGFNTLDSDLEFLKDAESVYWL
KYYAGCTWIGYYKAIGKLRLRIDYGRFLIKLASLKGSILP*
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spliced messenger RNA

>Gchil7737.t1 ID=Gchil7737.t1|Name=Gchil7737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00025321_pilon:851857..852729- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACATCGATTGTGTGTTCTTCTATTGCTTTCGGCAGCTCTCCTACA
CCTTGTCACGGCAACCTATTCTAACTGCTACTATGCGCACCACAAGATTC
GAGAACTTCTTGTGGAGGGTATGAAGGAAGATCCAGATCTCATTCCTGCG
TTTTCTCGTGCAGCCTTTCATGATTGCATCACGGCGACCAAGGCCAAACC
AAAATCCGGATGTAACGGAAGTCTTCGTCTCAAGGATGAGATTACGAATA
TGGACAATGATAGACTGCAACCACCGCTGGACTTCCTTCGAAAGCACTTG
CCTACCATCGAGAATCAGAAATGCGCATCGTTTGCAGACGGAATCCAACT
TGGAGCAGAAGTAGCTATGAAAGTATCAAACGGACCAAACGTTATTGGCA
AGCTGGTACGCTCTGTGTCGCCGCGTAAAGATGTCGACGAACCGGACACC
GTGGATGGAGAGCTTCCCAACGAGAACGACCCGTTCCAGAAATTGAAGGA
GTTCTTTGCGAGGAAGGGTTTCAATGTGAGGGAGATGATAGTGGCGAATG
TTGGTGGCCATGCTCTAGGAGCTTTTGTGGACGATGACGATGATCAAGAC
AAGCCTTTCACAACCACAGAGAATGAATTTAACATTGACTACGCCGTGAA
TCTTGTTCAGAGGATTGACACCGGTGTGAACTTAGAAGGATTCAACACTT
TAGACAGTGATTTGGAATTCCTCAAAGATGCGGAGTCGGTGTATTGGCTG
AAATACTACGCCGGTTGCACTTGGATCGGATACTACAAAGCAATCGGCAA
GCTTCGTTTGCGCATCGATTATGGCAGATTTCTCATCAAGCTGGCGAGTC
TGAAAGGGTCCATTCTCCCCTGA
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protein sequence of Gchil7737.t1

>Gchil7737.t1 ID=Gchil7737.t1|Name=Gchil7737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MVHRLCVLLLLSAALLHLVTATYSNCYYAHHKIRELLVEGMKEDPDLIPA
FSRAAFHDCITATKAKPKSGCNGSLRLKDEITNMDNDRLQPPLDFLRKHL
PTIENQKCASFADGIQLGAEVAMKVSNGPNVIGKLVRSVSPRKDVDEPDT
VDGELPNENDPFQKLKEFFARKGFNVREMIVANVGGHALGAFVDDDDDQD
KPFTTTENEFNIDYAVNLVQRIDTGVNLEGFNTLDSDLEFLKDAESVYWL
KYYAGCTWIGYYKAIGKLRLRIDYGRFLIKLASLKGSILP*
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mRNA from alignment at tig00025321_pilon:851857..852729-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7737.t1 ID=Gchil7737.t1|Name=Gchil7737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00025321_pilon:851857..852729- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACATCGATTGTGTGTTCTTCTATTGCTTTCGGCAGCTCTCCTACA
CCTTGTCACGGCAACCTATTCTAACTGCTACTATGCGCACCACAAGATTC
GAGAACTTCTTGTGGAGGGTATGAAGGAAGATCCAGATCTCATTCCTGCG
TTTTCTCGTGCAGCCTTTCATGATTGCATCACGGCGACCAAGGCCAAACC
AAAATCCGGATGTAACGGAAGTCTTCGTCTCAAGGATGAGATTACGAATA
TGGACAATGATAGACTGCAACCACCGCTGGACTTCCTTCGAAAGCACTTG
CCTACCATCGAGAATCAGAAATGCGCATCGTTTGCAGACGGAATCCAACT
TGGAGCAGAAGTAGCTATGAAAGTATCAAACGGACCAAACGTTATTGGCA
AGCTGGTACGCTCTGTGTCGCCGCGTAAAGATGTCGACGAACCGGACACC
GTGGATGGAGAGCTTCCCAACGAGAACGACCCGTTCCAGAAATTGAAGGA
GTTCTTTGCGAGGAAGGGTTTCAATGTGAGGGAGATGATAGTGGCGAATG
TTGGTGGCCATGCTCTAGGAGCTTTTGTGGACGATGACGATGATCAAGAC
AAGCCTTTCACAACCACAGAGAATGAATTTAACATTGACTACGCCGTGAA
TCTTGTTCAGAGGATTGACACCGGTGTGAACTTAGAAGGATTCAACACTT
TAGACAGTGATTTGGAATTCCTCAAAGATGCGGAGTCGGTGTATTGGCTG
AAATACTACGCCGGTTGCACTTGGATCGGATACTACAAAGCAATCGGCAA
GCTTCGTTTGCGCATCGATTATGGCAGATTTCTCATCAAGCTGGCGAGTC
TGAAAGGGTCCATTCTCCCCTGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:851857..852729-

>Gchil7737.t1 ID=Gchil7737.t1|Name=Gchil7737.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00025321_pilon:851857..852729- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACATCGATTGTGTGTTCTTCTATTGCTTTCGGCAGCTCTCCTACA
CCTTGTCACGGCAACCTATTCTAACTGCTACTATGCGCACCACAAGATTC
GAGAACTTCTTGTGGAGGGTATGAAGGAAGATCCAGATCTCATTCCTGCG
TTTTCTCGTGCAGCCTTTCATGATTGCATCACGGCGACCAAGGCCAAACC
AAAATCCGGATGTAACGGAAGTCTTCGTCTCAAGGATGAGATTACGAATA
TGGACAATGATAGACTGCAACCACCGCTGGACTTCCTTCGAAAGCACTTG
CCTACCATCGAGAATCAGAAATGCGCATCGTTTGCAGACGGAATCCAACT
TGGAGCAGAAGTAGCTATGAAAGTATCAAACGGACCAAACGTTATTGGCA
AGCTGGTACGCTCTGTGTCGCCGCGTAAAGATGTCGACGAACCGGACACC
GTGGATGGAGAGCTTCCCAACGAGAACGACCCGTTCCAGAAATTGAAGGA
GTTCTTTGCGAGGAAGGGTTTCAATGTGAGGGAGATGATAGTGGCGAATG
TTGGTGGCCATGCTCTAGGAGCTTTTGTGGACGATGACGATGATCAAGAC
AAGCCTTTCACAACCACAGAGAATGAATTTAACATTGACTACGCCGTGAA
TCTTGTTCAGAGGATTGACACCGGTGTGAACTTAGAAGGATTCAACACTT
TAGACAGTGATTTGGAATTCCTCAAAGATGCGGAGTCGGTGTATTGGCTG
AAATACTACGCCGGTTGCACTTGGATCGGATACTACAAAGCAATCGGCAA
GCTTCGTTTGCGCATCGATTATGGCAGATTTCTCATCAAGCTGGCGAGTC
TGAAAGGGTCCATTCTCCCCTGA
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