Gchil7755.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7755.t1
Unique NameGchil7755.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Homology
BLAST of Gchil7755.t1 vs. uniprot
Match: R7Q5U0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5U0_CHOCR)

HSP 1 Score: 243 bits (620), Expect = 1.150e-72
Identity = 130/233 (55.79%), Postives = 158/233 (67.81%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPCFAVGEADGSAKIKSDDVCDDIPDAEPSEPLTGS--------FVPITPEKMIR 233
            N+L +KG+PA+LEPF + ++ AF+ L EAV SPP+LALP  G P+ +DTDAS  QVG ALFQ+  +G+R  IG+ SR L+  E NYS SEKECLAVVW + TLRPYL G  F  +T+HS+LRWLMEIT+PSGRLMRWRLRL EFD D+ YKKG LNTQADALSRL TS ET    D EIPCF    ++     K  D  +D+  A     LT            PIT E+M+R
Sbjct:  118 NQLLKKGQPAKLEPFDETEIKAFDTLREAVISPPILALPKAGFPYSMDTDASDYQVGTALFQSHEDGQRKHIGFWSRLLHAAERNYSTSEKECLAVVWGVVTLRPYLQGTRFTVHTEHSSLRWLMEITDPSGRLMRWRLRLGEFDFDVKYKKGKLNTQADALSRLFTSGETTVPVDEEIPCFLGRFSEMEPVDKFSDDFEDLESARFDAILTRERYSTDENLLDPITREEMLR 350          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 250 bits (638), Expect = 1.180e-72
Identity = 133/250 (53.20%), Postives = 174/250 (69.60%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVET-EPIDDLEIPCFAVGEADGSAKIK-SDDVCDDIPDAE--PSEPLTGSFVPITPEKMIREQQMDPFCTQIRSRLNGGATI 254
            N+L +KG+P +LE F +    AF+ L +A+ +P VLALP   LP+ VDTDAS  Q+G ALFQT  + +R PIG+ SR L   E NYSVSEKE LAV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL+EFD +I YKKG  N+QADALSRL T+ ET + IDD EIPCF    A+G+ + + S D  DDI   E   +      F  +TPE++IREQ +DPFC +I+  ++ G  +
Sbjct:  101 NQLLKKGQPVQLEGFDEPCKKAFHKLKDAILAPLVLALPKKDLPYPVDTDASDYQIGAALFQTHPDAQRKPIGFFSRTLAAAERNYSVSEKEFLAVIWAVQTLRPYLYGEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKGNSQADALSRLRTAGETVDEIDD-EIPCFMAEPAEGTVENEESFDAIDDILALEGGTAPDRLDQFQAVTPEELIREQAVDPFCNRIKEEIDAGKFV 349          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QL13_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QL13_CHOCR)

HSP 1 Score: 233 bits (595), Expect = 3.310e-69
Identity = 117/203 (57.64%), Postives = 147/203 (72.41%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPCFAVGEADGSAKIK-SDDVCDDI 210
            N+L +KG+P +LE F +    AF+ L +A+ +PPVLALP   LP+ VDTDAS  Q+G ALFQT  + +R PIG+ S+ L   E NYSVSEKECLAV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL EFD +I YKKG  N+QADALSRL T+ ET    D EIPCF    A+G+ + + S D  DDI
Sbjct:   96 NQLLKKGQPVQLEGFDEPCKKAFHKLKDAILAPPVLALPKKDLPYSVDTDASDYQIGAALFQTHPDAQRKPIGFFSKTLAAAERNYSVSEKECLAVIWAVQTLRPYLYGEHFVVHTDHASLRWLMNVTDPSGRLIRWRLRLPEFDFEIKYKKGKANSQADALSRLRTAGETVDEIDNEIPCFTAEPAEGTVEDEESIDAADDI 298          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QA96_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA96_CHOCR)

HSP 1 Score: 232 bits (591), Expect = 4.420e-69
Identity = 124/245 (50.61%), Postives = 166/245 (67.76%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPCFAVGEADGSAKIKSDDV--CDDIPDAEP--SEPLTGSFVPITPEKMIREQQMDPFCTQIRSRLN 249
            N+L +KG+  +LE F +    AF+ L +A+ +PPVLALP   LP+ VDTDAS  Q+G ALFQT  + +R PIG+ SR L   E NYS SEKEC AV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL+EFD +I YKKG  N+QADALS+L T+ ET    D EIPCF + E D + +   +D    DDI   E   +      F  +TPE++IR+Q +D  C++I+  ++
Sbjct:   75 NQLLKKGQQVQLEGFHEPCEKAFHKLKDAILAPPVLALPKKDLPYSVDTDASDYQIGAALFQTHPDEQRKPIGFFSRTLAAAERNYSASEKECPAVIWAVQTLRPYLYGEHFIVHTDHTSLRWLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKANSQADALSKLRTAGETVDEIDNEIPCF-MAEPDDATEDDEEDFERLDDILALEEGATSDCLDHFQAVTPEELIRKQAVD--CSRIKEEIH 316          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QCX0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX0_CHOCR)

HSP 1 Score: 222 bits (565), Expect = 2.510e-65
Identity = 118/217 (54.38%), Postives = 151/217 (69.59%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVET-EPIDDLEIPCFAVGEADGSAKIKSD-DVCDDIPDAEPSEPLTGSF 223
            N+L +KG+P +LE F +    AF+ L +A+ +PPVLALP   LP+ VDTDA   Q+G ALFQT  + +R PIG+ SR L   E NYSVSEKECLA +WA+ TLRPYL G HF  +TDH++LR LM +T+PSGRL+RWRLRL+EFD +I YKKG  N+QADALSRL T+ ET + IDD EI CF    A+G+ + + + D  DDI   +   PL  S 
Sbjct:   57 NQLLKKGQPVQLEGFDEPCKKAFHKLKDAILAPPVLALPKKDLPYSVDTDARDYQIGAALFQTHPDAQRKPIGFFSRTLAAAERNYSVSEKECLAEIWAVQTLRPYLYGEHFIVHTDHASLRSLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKANSQADALSRLQTAGETVDEIDD-EILCFMAEPAEGTVEDEDNSDALDDILAFKGGPPLIASI 272          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QU28_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QU28_CHOCR)

HSP 1 Score: 220 bits (560), Expect = 6.090e-64
Identity = 110/193 (56.99%), Postives = 140/193 (72.54%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVET-EPIDDLEIPCFAVGEADGSAK 200
            N+L  K +  +LE F +    AF+ L +A+ +PPVLALP   LP+ VDTDAS  Q+G ALFQT  + +R PIG+ SR L   E NYSVSEKECLAV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL++FD +I YKKG  N+QADALSRL T+ ET + IDD  IPCF     +G+ +
Sbjct:   87 NQLLTKEQSVQLEGFDEPCEKAFHKLKDAILAPPVLALPKKDLPYSVDTDASDYQIGAALFQTHPDAQRKPIGFFSRTLAAAERNYSVSEKECLAVIWAIQTLRPYLYGEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSKFDFEIKYKKGKANSQADALSRLRTAGETVDEIDDA-IPCFMAEPVEGTVE 278          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QJ39_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ39_CHOCR)

HSP 1 Score: 223 bits (568), Expect = 6.550e-63
Identity = 111/193 (57.51%), Postives = 142/193 (73.58%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVET-EPIDDLEIPCFAVGEADGSAK 200
            N+L +KG+P +LE F +    AF+ L +A+ +PPVL LP   LP+ V+TDAS  Q+G ALFQT    +R PI + SR L   E NYSVSEKECLAV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL++FD +I YKKG  N+QADALSRL T+ ET + IDD EIPCF    A+G+ +
Sbjct:   87 NQLLKKGQPVQLEGFDEPCEKAFHKLKDAILAPPVLVLPKENLPYSVETDASDYQIGAALFQTHPGAQRKPIEFFSRTLAAAERNYSVSEKECLAVIWAVQTLRPYLYGEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSKFDFEIKYKKGKANSQADALSRLRTAGETVDEIDD-EIPCFIAEPAEGTVE 278          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QSF8_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSF8_CHOCR)

HSP 1 Score: 216 bits (550), Expect = 1.330e-62
Identity = 106/183 (57.92%), Postives = 133/183 (72.68%), Query Frame = 0
Query:    7 LQNELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPC 189
            L N+L +KG+P ++  F +   +AF+ L +A+ +PP LALP  GLP+ VDTDAS   +G ALFQT  + +R PIG+ SR L   E NYSVSEKECLAV+WA+ TLRPYL G HF  +TDHS+LRWLM +T+ SG L+ WRLRL+EFD +I YKKG +NT+ADALSRL T  ET    D EIPC
Sbjct:   54 LLNQLLKKGQPVQIAEFNEPCNAAFHELKDAILAPPGLALPRKGLPYSVDTDASDYHIGAALFQTHRDAQRKPIGFFSRTLAAAERNYSVSEKECLAVIWAVQTLRPYLYGEHFIVHTDHSSLRWLMNVTDSSGSLILWRLRLSEFDFEIKYKKGKVNTKADALSRLLTKGETSNDVDEEIPC 236          
BLAST of Gchil7755.t1 vs. uniprot
Match: Q7XZ40_GRIJA (Ribonuclease H (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ40_GRIJA)

HSP 1 Score: 205 bits (522), Expect = 4.470e-62
Identity = 109/186 (58.60%), Postives = 123/186 (66.13%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGT-SVETEPIDDLEIPCFAVG 193
            N L +KG P EL P  +AQ  AF  L + VTSPPVLALP L  P+ VD DAS +QVGCAL+Q   E  + PIG+ SR L   E NYS +EKECLAVVW L TLRPYL    F  +TDHSAL WL+   EPSGRL+RWRL L+EF  DI YKKG+ NTQADALSRL T S         EIP F  G
Sbjct:   15 NLLLKKGTPPELAPLSEAQRHAFRTLKDTVTSPPVLALPRLNRPYVVDCDASNEQVGCALYQLDEENVKRPIGFWSRTLLPAELNYSTTEKECLAVVWTLRTLRPYLQFETFTVFTDHSALHWLLSTPEPSGRLIRWRLLLSEFTFDIKYKKGSSNTQADALSRLRTLSPAVADAKVTEIPAFPGG 200          
BLAST of Gchil7755.t1 vs. uniprot
Match: R7QTY1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTY1_CHOCR)

HSP 1 Score: 213 bits (543), Expect = 4.940e-62
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = 0
Query:    9 NELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLGLPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKECLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLAEFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPCF 190
            N+L +KG+P +LE F +    AF+ L +A+ +PPVLALP   LP+ VD DAS  Q+G AL QT  + +R  IG+ SR L   E NYSVSEKECLAV+WA+ TLRPYL G HF  +TDH++LRWLM +T+PSGRL+RWRLRL+EFD +I YKKG  N+QADALSRL T+ ETE I +  +  F
Sbjct:  138 NQLLKKGQPVQLEGFDEPCKKAFHKLKDAILAPPVLALPKKDLPYSVDIDASDYQIGAALVQTHPDAQRKLIGFFSRTLASAERNYSVSEKECLAVIWAVQTLRPYLYGEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKANSQADALSRLRTAGETELICEQAVDPF 319          
The following BLAST results are available for this feature:
BLAST of Gchil7755.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q5U0_CHOCR1.150e-7255.79Integrase catalytic domain-containing protein n=1 ... [more]
R7QG36_CHOCR1.180e-7253.20Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QL13_CHOCR3.310e-6957.64Integrase catalytic domain-containing protein n=2 ... [more]
R7QA96_CHOCR4.420e-6950.61Integrase catalytic domain-containing protein n=1 ... [more]
R7QCX0_CHOCR2.510e-6554.38Integrase catalytic domain-containing protein n=1 ... [more]
R7QU28_CHOCR6.090e-6456.99Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJ39_CHOCR6.550e-6357.51Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QSF8_CHOCR1.330e-6257.92Integrase catalytic domain-containing protein n=1 ... [more]
Q7XZ40_GRIJA4.470e-6258.60Ribonuclease H (Fragment) n=1 Tax=Griffithsia japo... [more]
R7QTY1_CHOCR4.940e-6257.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 51..152
e-value: 3.4E-33
score: 114.1
NoneNo IPR availableGENE3D3.10.20.370coord: 49..121
e-value: 2.2E-6
score: 29.6
NoneNo IPR availablePANTHERPTHR34072ENZYMATIC POLYPROTEIN-RELATEDcoord: 23..176
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 330..332
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..308
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 309..329
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 54..173
e-value: 2.26145E-56
score: 177.3
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 20..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:911107..912105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7755.t1Gchil7755.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025321_pilon 911107..912105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7755.t1 ID=Gchil7755.t1|Name=Gchil7755.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MLMLQLLQNELFRKGRPAELEPFGDAQVSAFNFLVEAVTSPPVLALPTLG
LPFEVDTDASKDQVGCALFQTSTEGERHPIGYCSRNLNFHEHNYSVSEKE
CLAVVWALATLRPYLMGRHFKEYTDHSALRWLMEITEPSGRLMRWRLRLA
EFDSDILYKKGTLNTQADALSRLGTSVETEPIDDLEIPCFAVGEADGSAK
IKSDDVCDDIPDAEPSEPLTGSFVPITPEKMIREQQMDPFCTQIRSRLNG
GATILFWTDDQGYLARNVESNPPTCGSSFLTEKGTTCFTLIEVEFPSRRK
KIVLDPKKGFLLACYCFWLLCSTSFLHGVSEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041373RT_RNaseH
IPR043502DNA/RNA_pol_sf