Gchil7720.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7720.t1
Unique NameGchil7720.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:537618..539048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7720Gchil7720Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 537618..539048 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7720.t1.stop1Gchil7720.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 537618..537620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7720.t1.CDS1Gchil7720.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 537618..539048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7720.t1.exon1Gchil7720.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 537618..539048 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7720.t1.start1Gchil7720.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 539046..539048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7720.t1Gchil7720.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 537618..539048 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7720.t1 ID=Gchil7720.t1|Name=Gchil7720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp
MSKRRRSPSRSLHRNCDYPLIKAQPQNPVSSSVQISPQSFLPASSEMAIS
ISIVFTFISLSILSIASAYGPTCRSKNIFPHVSCEPQCAPYSYNTQVKCR
KNEQFGCSYERCSGMNFQCSLNQTTENNNPCPNGEVPVENVSLQHYHPVE
VNLAINLRGYPLHVLLLIDASAPSSQINALKPEMVSLLRKLEGTAEVSVA
IYGAEQEFDSSGYSVLAAKSDDVTQAIQALDGIPQKADGARTTLTALRSL
VHNGILRASKDVVLLIGDTPGREPECGVGFDRIQTANELYSVHTGAVLLP
VSIGTPGLDGALPAPEACPNSYIETKPIDENQASYIASHTQGEVIETVTA
DEMLQAIDRARRKDGRIHQRPPGSYISVSTARFPNIVGPFTVPEQFQTYS
NGCEERVIATLTGVSGFVSAPAQTNAKLKLDLPLTACLEGPFSCEVRIVE
RQQGYEAMSVWYRPLVIYEIITVSAC*
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spliced messenger RNA

>Gchil7720.t1 ID=Gchil7720.t1|Name=Gchil7720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00025321_pilon:537618..539048- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGCGCCGGAGATCTCCTTCGCGATCATTGCATCGCAACTGCGA
CTATCCTCTTATAAAAGCACAACCTCAAAACCCGGTCTCTTCGTCCGTCC
AAATTTCTCCGCAAAGCTTCCTTCCGGCCTCATCAGAAATGGCGATTTCC
ATCTCCATAGTTTTCACATTTATTTCGCTTTCCATTCTCTCTATAGCTTC
CGCGTACGGTCCGACATGTCGCTCCAAAAATATCTTCCCACATGTTTCTT
GTGAACCGCAATGCGCTCCATACTCATACAATACACAAGTAAAGTGTCGA
AAAAACGAACAGTTTGGCTGTTCCTATGAGAGATGCTCTGGAATGAACTT
TCAATGTTCTCTAAATCAAACAACAGAAAACAACAATCCATGTCCAAATG
GAGAAGTGCCAGTTGAGAATGTTAGTCTGCAGCACTACCACCCGGTTGAA
GTGAATTTGGCAATCAACCTCCGCGGATATCCACTCCATGTGTTGCTTTT
GATCGACGCCAGTGCACCAAGCTCCCAAATTAATGCTCTTAAGCCAGAAA
TGGTTTCCTTGCTCAGAAAACTTGAAGGAACGGCGGAGGTCAGTGTGGCA
ATTTATGGTGCGGAACAAGAGTTCGACTCTTCAGGCTATTCTGTACTCGC
AGCAAAGTCCGACGACGTGACGCAGGCTATTCAAGCACTTGATGGTATTC
CTCAAAAAGCTGACGGGGCGAGAACTACTTTGACTGCTCTTCGTTCATTA
GTACATAATGGTATTCTCCGAGCATCCAAGGACGTCGTCTTGCTAATTGG
TGACACACCTGGTCGAGAACCAGAATGTGGGGTCGGGTTTGATCGTATTC
AAACTGCCAATGAACTGTACAGCGTCCACACTGGTGCCGTATTGTTGCCA
GTGAGCATTGGAACTCCAGGACTAGATGGTGCTCTCCCAGCTCCAGAAGC
TTGTCCCAATTCCTATATCGAAACAAAGCCTATCGACGAAAACCAAGCTA
GTTATATAGCATCACACACGCAAGGAGAAGTCATCGAAACTGTCACAGCC
GACGAAATGTTACAGGCTATTGATCGTGCTAGGAGAAAGGATGGTAGAAT
CCACCAAAGACCGCCTGGAAGTTATATCAGCGTCAGCACCGCACGTTTTC
CTAACATTGTGGGCCCATTCACCGTTCCCGAACAATTTCAAACGTATAGC
AATGGGTGTGAGGAAAGAGTGATAGCGACATTGACAGGTGTATCTGGATT
TGTGAGCGCTCCTGCTCAGACGAACGCAAAATTGAAGCTTGATTTACCAC
TTACGGCATGTCTGGAGGGTCCATTCTCCTGCGAAGTGAGGATTGTCGAA
CGCCAACAAGGATATGAAGCTATGAGTGTGTGGTATAGGCCTCTTGTGAT
TTACGAAATTATCACTGTTAGTGCGTGTTAG
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protein sequence of Gchil7720.t1

>Gchil7720.t1 ID=Gchil7720.t1|Name=Gchil7720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=477bp
MSKRRRSPSRSLHRNCDYPLIKAQPQNPVSSSVQISPQSFLPASSEMAIS
ISIVFTFISLSILSIASAYGPTCRSKNIFPHVSCEPQCAPYSYNTQVKCR
KNEQFGCSYERCSGMNFQCSLNQTTENNNPCPNGEVPVENVSLQHYHPVE
VNLAINLRGYPLHVLLLIDASAPSSQINALKPEMVSLLRKLEGTAEVSVA
IYGAEQEFDSSGYSVLAAKSDDVTQAIQALDGIPQKADGARTTLTALRSL
VHNGILRASKDVVLLIGDTPGREPECGVGFDRIQTANELYSVHTGAVLLP
VSIGTPGLDGALPAPEACPNSYIETKPIDENQASYIASHTQGEVIETVTA
DEMLQAIDRARRKDGRIHQRPPGSYISVSTARFPNIVGPFTVPEQFQTYS
NGCEERVIATLTGVSGFVSAPAQTNAKLKLDLPLTACLEGPFSCEVRIVE
RQQGYEAMSVWYRPLVIYEIITVSAC*
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mRNA from alignment at tig00025321_pilon:537618..539048-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7720.t1 ID=Gchil7720.t1|Name=Gchil7720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00025321_pilon:537618..539048- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAGCGCCGGAGATCTCCTTCGCGATCATTGCATCGCAACTGCGA
CTATCCTCTTATAAAAGCACAACCTCAAAACCCGGTCTCTTCGTCCGTCC
AAATTTCTCCGCAAAGCTTCCTTCCGGCCTCATCAGAAATGGCGATTTCC
ATCTCCATAGTTTTCACATTTATTTCGCTTTCCATTCTCTCTATAGCTTC
CGCGTACGGTCCGACATGTCGCTCCAAAAATATCTTCCCACATGTTTCTT
GTGAACCGCAATGCGCTCCATACTCATACAATACACAAGTAAAGTGTCGA
AAAAACGAACAGTTTGGCTGTTCCTATGAGAGATGCTCTGGAATGAACTT
TCAATGTTCTCTAAATCAAACAACAGAAAACAACAATCCATGTCCAAATG
GAGAAGTGCCAGTTGAGAATGTTAGTCTGCAGCACTACCACCCGGTTGAA
GTGAATTTGGCAATCAACCTCCGCGGATATCCACTCCATGTGTTGCTTTT
GATCGACGCCAGTGCACCAAGCTCCCAAATTAATGCTCTTAAGCCAGAAA
TGGTTTCCTTGCTCAGAAAACTTGAAGGAACGGCGGAGGTCAGTGTGGCA
ATTTATGGTGCGGAACAAGAGTTCGACTCTTCAGGCTATTCTGTACTCGC
AGCAAAGTCCGACGACGTGACGCAGGCTATTCAAGCACTTGATGGTATTC
CTCAAAAAGCTGACGGGGCGAGAACTACTTTGACTGCTCTTCGTTCATTA
GTACATAATGGTATTCTCCGAGCATCCAAGGACGTCGTCTTGCTAATTGG
TGACACACCTGGTCGAGAACCAGAATGTGGGGTCGGGTTTGATCGTATTC
AAACTGCCAATGAACTGTACAGCGTCCACACTGGTGCCGTATTGTTGCCA
GTGAGCATTGGAACTCCAGGACTAGATGGTGCTCTCCCAGCTCCAGAAGC
TTGTCCCAATTCCTATATCGAAACAAAGCCTATCGACGAAAACCAAGCTA
GTTATATAGCATCACACACGCAAGGAGAAGTCATCGAAACTGTCACAGCC
GACGAAATGTTACAGGCTATTGATCGTGCTAGGAGAAAGGATGGTAGAAT
CCACCAAAGACCGCCTGGAAGTTATATCAGCGTCAGCACCGCACGTTTTC
CTAACATTGTGGGCCCATTCACCGTTCCCGAACAATTTCAAACGTATAGC
AATGGGTGTGAGGAAAGAGTGATAGCGACATTGACAGGTGTATCTGGATT
TGTGAGCGCTCCTGCTCAGACGAACGCAAAATTGAAGCTTGATTTACCAC
TTACGGCATGTCTGGAGGGTCCATTCTCCTGCGAAGTGAGGATTGTCGAA
CGCCAACAAGGATATGAAGCTATGAGTGTGTGGTATAGGCCTCTTGTGAT
TTACGAAATTATCACTGTTAGTGCGTGTTAG
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Coding sequence (CDS) from alignment at tig00025321_pilon:537618..539048-

>Gchil7720.t1 ID=Gchil7720.t1|Name=Gchil7720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00025321_pilon:537618..539048- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAAGCGCCGGAGATCTCCTTCGCGATCATTGCATCGCAACTGCGA
CTATCCTCTTATAAAAGCACAACCTCAAAACCCGGTCTCTTCGTCCGTCC
AAATTTCTCCGCAAAGCTTCCTTCCGGCCTCATCAGAAATGGCGATTTCC
ATCTCCATAGTTTTCACATTTATTTCGCTTTCCATTCTCTCTATAGCTTC
CGCGTACGGTCCGACATGTCGCTCCAAAAATATCTTCCCACATGTTTCTT
GTGAACCGCAATGCGCTCCATACTCATACAATACACAAGTAAAGTGTCGA
AAAAACGAACAGTTTGGCTGTTCCTATGAGAGATGCTCTGGAATGAACTT
TCAATGTTCTCTAAATCAAACAACAGAAAACAACAATCCATGTCCAAATG
GAGAAGTGCCAGTTGAGAATGTTAGTCTGCAGCACTACCACCCGGTTGAA
GTGAATTTGGCAATCAACCTCCGCGGATATCCACTCCATGTGTTGCTTTT
GATCGACGCCAGTGCACCAAGCTCCCAAATTAATGCTCTTAAGCCAGAAA
TGGTTTCCTTGCTCAGAAAACTTGAAGGAACGGCGGAGGTCAGTGTGGCA
ATTTATGGTGCGGAACAAGAGTTCGACTCTTCAGGCTATTCTGTACTCGC
AGCAAAGTCCGACGACGTGACGCAGGCTATTCAAGCACTTGATGGTATTC
CTCAAAAAGCTGACGGGGCGAGAACTACTTTGACTGCTCTTCGTTCATTA
GTACATAATGGTATTCTCCGAGCATCCAAGGACGTCGTCTTGCTAATTGG
TGACACACCTGGTCGAGAACCAGAATGTGGGGTCGGGTTTGATCGTATTC
AAACTGCCAATGAACTGTACAGCGTCCACACTGGTGCCGTATTGTTGCCA
GTGAGCATTGGAACTCCAGGACTAGATGGTGCTCTCCCAGCTCCAGAAGC
TTGTCCCAATTCCTATATCGAAACAAAGCCTATCGACGAAAACCAAGCTA
GTTATATAGCATCACACACGCAAGGAGAAGTCATCGAAACTGTCACAGCC
GACGAAATGTTACAGGCTATTGATCGTGCTAGGAGAAAGGATGGTAGAAT
CCACCAAAGACCGCCTGGAAGTTATATCAGCGTCAGCACCGCACGTTTTC
CTAACATTGTGGGCCCATTCACCGTTCCCGAACAATTTCAAACGTATAGC
AATGGGTGTGAGGAAAGAGTGATAGCGACATTGACAGGTGTATCTGGATT
TGTGAGCGCTCCTGCTCAGACGAACGCAAAATTGAAGCTTGATTTACCAC
TTACGGCATGTCTGGAGGGTCCATTCTCCTGCGAAGTGAGGATTGTCGAA
CGCCAACAAGGATATGAAGCTATGAGTGTGTGGTATAGGCCTCTTGTGAT
TTACGAAATTATCACTGTTAGTGCGTGTTAG
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