Gchil5899.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5899.t1
Unique NameGchil5899.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length1478
Homology
BLAST of Gchil5899.t1 vs. uniprot
Match: A0A2V3IVK3_9FLOR (Med12 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVK3_9FLOR)

HSP 1 Score: 1801 bits (4665), Expect = 0.000e+0
Identity = 929/1486 (62.52%), Postives = 1143/1486 (76.92%), Query Frame = 0
Query:    1 MDEPIPPWVPEVAPGIRADVYPVEPARHLHNPYFRYPAELRLDRAAVIHGYSERRLPYEFHSRLSTERPPPLSSSQPQHLTPSLTTSDLTKLKNGLIALRRTRPTKLQRVKAASPPKQNASRANLRHFPLQKHPLSQNLDEWFNRLSKAPHNPLSELTHSVPLGPAIVRAAGKVVEMMATRSISTQRAAWYIRIAVLNECIRQIRPDRPPPSPKLFWTKQLCGLLKTEIDAIRARKTPMLGSMERVAFWQYILDLARWQADEGLLDVSKWITAIAQALRVELISSQSFSAPGTKITVMAARRFLPEFLSSADGARLLLDSLLRGSNLIITAHRASCASSTRETAKGKIIHRKATRRASSSASPSVAAATMTTFSLKSTPDLCHLEVMQLLKSGLNALQVHSQQDKAEEFSMPIFEQLVQKGLETLHIAKDKGKEREPKPDYRTKEERLGSPNIAIRHFETLATHGDVARVTSILKQAYKERGGTPMAVRKVCSWALSSMVADRAEAICVATAILHQLAADPASAGSTTLKSSKNRTTPKRYKKGIHQVRNAMTPPTLGNLNNGPPSPPLQRDIWHFLKHYANDRIP------ETGKGEGIVKELHGGTQAENIEGDDSVVRFIAHLCRHDLLSLPGFVRDVSRLAATNHRGASFLVKCLALLPDPVDKSVSDCRRSILRKYGYISPTKQCYPRGVCDKSIRIACSGDVNAMDIQVDALISQGDTNVILTSIDSLCQRDLKSITGNVTEVQEKIATMASFMVSLGEAGTATEWVMDSLSRL-DSGGLWNNECMASRRANLTIAFTQLASHLSRYIAACGYLESIFILMTNIWSRPWKTRDLETQLMRTLSSFARYYGCRIRPVTSYWIRMAARNLKQIASDRNGLSCVPLALACMRGLHDPKPAGSIALADVLDLSKKENLGMNADDDVSQLASQTELNGDRISELRAYFTTINGAFPIASLFGSGCTASDVFGSVVIPVLRDSFLGSECASSPKSSFSQHSATALHLICSHQNDMRLQGIRPSILLELVTLFFLGCYYGHTNTSESLEVLFSIKWVWKILAPYASMELAKRLRNRVDFYWSRVVVGKKSTLDDKKRLPATLFNMVSLLCRKQTGGDEEMVLKTIGTTSFGKVEMLLALLAQHRRESGEEDEFGLKVSNQATKLNCKHLSRSLVLIALRCCPQEIFMQSVAGYIGHQASRGLQVSLDCVLKGLIVDASQNDL--RAVCLQWCRVDEAQRALLETAIGNLKPEHAGDVEDSLFEQLVSASKLLTEAMAEGRVPSNIFRDGQIISDALESRLLCILRAPRLPQRADWWRQRAQQIAKLVKSAAGLLTKSGISAACKLLDLCLRSIKELSISDENTQKDVAISQIFEWPINQELKKTLEAALVPAMRWVESSERNSIARLLPPSSTYCTTSTNHVRVLNGDGSVVDNWMLLEGYGRGENQASAIPPENMWRQGEMMIDKDRVVGTVHLKRTYSTFASLAV 1477
            MDEPIPPWVPE++PG+ ADVYPV+P RH  NPYF+YPAELRLDRAAVI+GY+ERRLPYEF SRL TE PP LSSS PQH TP+LT +DL+KLKNGL+ALRR RP KLQRV+ + P   N  +   R FPLQK PLSQ LD+WFNRLSK  H+PLSEL+ SVPLGPAIVRAA KV+EMMAT SISTQRAAWYIRIAVLNEC++Q+RPDRPPPSPKLFWTKQLC LLKTEI+A RARK  MLG MERV FW Y+LDLARWQADEGLLDVSKWITAIA ALR ELIS QSFS+PGTKITVMAARRFLPEFLSS D AR+LLD+LL G+  II A RAS  ++ RE+AK K   RK ++R   +A PS  A      +  ST + CH+E+M LL +GL A+QV S     +EF+M  FE+LV+K  +T+  ++D+ KE++PKPDYRTKEE++ SPN+AIR FE L+ HGDVARV SIL+ AY+ERGGTPMAVRKVC W LS  V DRAEAICVA A+ H+LAA+ AS+ +++ +  +N    KR KKGIH  R        GNLN G  +PPLQRDIWHF+K YAN ++P      ET + + +V E     + E+++ DDS+VRFIAHLCRH+LLSLP FVRDVSRL+A ++ G +FLVKCL+LLPDPVDKS SDCRRSILRKYG+ S +K  YP GVC+KS+ IA SGD + M  QVDAL  +G TNVI+++ID+LCQ+DL S+ G+V E+  K+ TM SFMVSLGEA TA EWVMDSL  L ++  +W +  M ++R +L+++  +L S+LSRYIAA GYLE +F++   IW   W   DLET+L+RTLSSFARY G RI P   +W++MAA+NLK    D  GLSC+PLALACMRG  D + AGS  L +VL+LS +ENLG++ADDDV+QL S+  LNG +IS+LRA F    G+F +  LF  G  A+D+ GSV+IPVL+ S L S    +P ++FSQ SA ALHLI S++ND+R QGIRP+ILLE VTL F GCYYGHTN+SESLEVLF+IKWVWKILAPY+S+ELAKRLR R DFY  R+ V       DK  L A+LFNM+S LC ++TGGDEE VLK+IG+T FG+VEMLLALLAQHRRESG ED+FGLKVS QAT + CKH +R+LV +ALRCC Q++  QSVAGY+ HQAS G+Q SL  VL+GL V+A +N+   R   LQWC++D A+R LLETAI +LK EHA DVE +LFEQL  AS+LL+EA+ EGR PS+I  DG++ISDALESRLLCILR PR+   A+ WRQRAQ++A+L+KS  G++T S I+AAC LLDLCLRS+++ S S +     +A++Q+ EWP NQELK+ LEA LV AMRWVE +ER  +A+L+P    Y +  +  V+VL GDGSVVDNW+LLEGYGRG ++ SAI  E+MWRQG+ ++D++  +GTVHLKRTYSTFASLAV
Sbjct:    1 MDEPIPPWVPEISPGVHADVYPVDPVRHPQNPYFQYPAELRLDRAAVINGYAERRLPYEFASRLPTEGPPSLSSSPPQHQTPTLTQTDLSKLKNGLVALRRARPNKLQRVQVSPPSNNNNPQTAPRSFPLQKPPLSQTLDDWFNRLSKGSHHPLSELSRSVPLGPAIVRAARKVIEMMATSSISTQRAAWYIRIAVLNECVKQMRPDRPPPSPKLFWTKQLCSLLKTEIEAFRARKMAMLGRMERVTFWNYVLDLARWQADEGLLDVSKWITAIAHALREELISMQSFSSPGTKITVMAARRFLPEFLSSPDAARVLLDALLTGAGFIIKASRAS-GNAARESAKSKNTPRKISKR---TALPSPTAGPAPGAAAVSTANECHVEIMHLLATGLKAMQV-SVPPVTDEFNMATFERLVRKAADTIQASRDRRKEKDPKPDYRTKEEKMMSPNLAIRQFEMLSAHGDVARVVSILRAAYRERGGTPMAVRKVCEWTLSPSVPDRAEAICVACAVFHRLAAESASSATSSSRVVRNGANMKRSKKGIHPTRTPALSSKPGNLN-GTQAPPLQRDIWHFIKQYANLKVPDTTDRDETDRDDAVVNERSRARKPESLDEDDSIVRFIAHLCRHELLSLPAFVRDVSRLSAVHNPGTAFLVKCLSLLPDPVDKSTSDCRRSILRKYGFHSSSKSSYPHGVCEKSLAIAGSGDASLMAAQVDALGGRGATNVIMSTIDALCQQDLTSMNGDVHELHRKLTTMVSFMVSLGEAATAVEWVMDSLDALVENSPVWKSSVMKAKRRSLSVSLARLISNLSRYIAASGYLEKVFMVFKAIWCSAWLDSDLETELLRTLSSFARYCGSRIIPSPPFWMKMAAKNLKHFGEDAKGLSCIPLALACMRGQEDYRKAGSSTLNEVLNLSNRENLGVSADDDVAQLCSRAVLNGIQISQLRACFAGNEGSFVVDDLFRCGFNANDILGSVLIPVLKHSLLESGSLETPVATFSQLSAKALHLIESNRNDVRFQGIRPAILLEFVTLLFCGCYYGHTNSSESLEVLFAIKWVWKILAPYSSIELAKRLRVRADFYCGRLDV-------DKTELSASLFNMISRLCGQETGGDEETVLKSIGSTPFGEVEMLLALLAQHRRESGGEDDFGLKVSGQATLVMCKHSARTLVAVALRCCAQDVSRQSVAGYVVHQASHGMQESLTYVLRGLTVEAYKNNEVHRERSLQWCQMDAARRGLLETAIASLKAEHAVDVEAALFEQLSGASRLLSEALTEGRAPSSIVEDGELISDALESRLLCILRCPRMSVHAERWRQRAQEVAELLKSGIGIMTGSAIAAACNLLDLCLRSMRDSSTSADEHANGIAVNQVLEWPENQELKRQLEATLVAAMRWVEPAERAIMAKLIPRRMGYGSGLSRPVKVLKGDGSVVDNWILLEGYGRGADEESAIGAEDMWRQGDSIVDRESAIGTVHLKRTYSTFASLAV 1473          
BLAST of Gchil5899.t1 vs. uniprot
Match: A0A7S1TFY4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFY4_9RHOD)

HSP 1 Score: 167 bits (422), Expect = 7.360e-38
Identity = 103/275 (37.45%), Postives = 155/275 (56.36%), Query Frame = 0
Query:   72 LSSSQP-----QHLTPSLTTSDLTKLKNGLIALRRTRPTKLQRVKAASPP-KQNASRANLRHFPLQKHPLSQNLDEWFNRLSKAPHNPLSELTHSVPLGPAIVRAAGKVVEMMATRSISTQRAAWYIRIAVLNECIRQIRPDRPPPSPKLFWTKQLCGLLKTEIDAIRARKTPMLGSMERVAFWQYILDLARWQADEGLLDVSKWITAIAQALRVELI---------SSQSFSAP----------GTKITVMAARRFLPEFLSSADGARLLLDSL 321
            +SSSQP      H    +T+  L ++K  +  LRRT+P   QR +        N S +    FP+Q+  L + LD +F++L+   +    +LTH VP G  + R+  +++E+MA++ +  QRA WYIRI ++N+ ++Q RPDRPPP+PK  WTK +  LL  + ++ RAR      + E++AFW+Y+LDL RWQADEGLLD++ WI  +A  LR E+          S  S SA           G K+TV AA RF  E   + + ++ +LD L
Sbjct:   29 ISSSQPASGSASHSLQLITSDRLCRIKESITTLRRTKPPGRQREELGLENLHNNDSGSKWGPFPVQRI-LPEALDSFFDKLASDAYTT-QDLTHMVPAGGPVTRSLPRLLELMASKGVPAQRATWYIRITIMNDAMKQARPDRPPPNPKQNWTKLIHDLL--QFESFRARGPNAQMAAEKLAFWEYVLDLLRWQADEGLLDMNMWINKLAHELRKEIAFARSTLHDASGHSTSASSAADIEVALLGCKVTVGAAERFEHELFQTRELSQPVLDLL 299          
BLAST of Gchil5899.t1 vs. uniprot
Match: A0A7S0BMQ7_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMQ7_9RHOD)

HSP 1 Score: 117 bits (294), Expect = 6.190e-25
Identity = 81/246 (32.93%), Postives = 130/246 (52.85%), Query Frame = 0
Query:   39 ELRLDRAAVIHGYSERRLPYEFHSRLSTERPPPLSSSQPQHLTPSLTTSD--LTKLKNGLIALRRTRPTKLQRVKAASPPKQNASRANLRHFPLQKHPLSQNLDEWFNRLSKAPHNPLSELTHSVPLGPAIVRAAGKVVEMMATRSISTQRAAWYIRIAVLNECIRQIRPDRPPPSPKLFWTKQLCGLLKTEIDAIRARKTPMLGSMERVAFWQYILDLARWQADEGLLDVSKWITAIAQALRVEL 282
            EL L+   VI G++E R  +EF S +        S+S   H  P++      + ++ + +  L + RP  L+ V      K  + +     FPLQK  ++   +E+  RL++ P   +S+    VPLGPAI R+ GK +EMM  +++  Q AAW++++A+LNE  ++ RPD+P PS K  W K      + ++++ RA       S  +   W+Y L + R+QADEGLLD S   T + + L  EL
Sbjct:   45 ELVLNDTTVISGHAEWRKAWEFDSCIKNCSLVNTSNSG-GHSNPTVNVGSGGVARIASAVSELSKRRPRCLRFVLKERDDKTFSEQLA---FPLQKPSVNIAFEEFLLRLARGPCKAVSK---DVPLGPAISRSVGKTLEMMMEKNVPPQAAAWFLKVAILNELPKKTRPDKPLPSAKWLWFKLASEHFRAQLESYRALNVSPQTSAFKSNQWEYFLSILRFQADEGLLDES---TLVGRLLFAEL 280          
The following BLAST results are available for this feature:
BLAST of Gchil5899.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IVK3_9FLOR0.000e+062.52Med12 domain-containing protein n=1 Tax=Gracilario... [more]
A0A7S1TFY4_9RHOD7.360e-3837.45Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0BMQ7_9RHOD6.190e-2532.93Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019035Mediator complex, subunit Med12PFAMPF09497Med12coord: 136..193
e-value: 3.4E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 426..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..805
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1017..1033
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1034..1477
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 806..824
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 825..1016

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:40398..44831 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5899.t1Gchil5899.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025225_pilon 40398..44831 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5899.t1 ID=Gchil5899.t1|Name=Gchil5899.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=1478bp
MDEPIPPWVPEVAPGIRADVYPVEPARHLHNPYFRYPAELRLDRAAVIHG
YSERRLPYEFHSRLSTERPPPLSSSQPQHLTPSLTTSDLTKLKNGLIALR
RTRPTKLQRVKAASPPKQNASRANLRHFPLQKHPLSQNLDEWFNRLSKAP
HNPLSELTHSVPLGPAIVRAAGKVVEMMATRSISTQRAAWYIRIAVLNEC
IRQIRPDRPPPSPKLFWTKQLCGLLKTEIDAIRARKTPMLGSMERVAFWQ
YILDLARWQADEGLLDVSKWITAIAQALRVELISSQSFSAPGTKITVMAA
RRFLPEFLSSADGARLLLDSLLRGSNLIITAHRASCASSTRETAKGKIIH
RKATRRASSSASPSVAAATMTTFSLKSTPDLCHLEVMQLLKSGLNALQVH
SQQDKAEEFSMPIFEQLVQKGLETLHIAKDKGKEREPKPDYRTKEERLGS
PNIAIRHFETLATHGDVARVTSILKQAYKERGGTPMAVRKVCSWALSSMV
ADRAEAICVATAILHQLAADPASAGSTTLKSSKNRTTPKRYKKGIHQVRN
AMTPPTLGNLNNGPPSPPLQRDIWHFLKHYANDRIPETGKGEGIVKELHG
GTQAENIEGDDSVVRFIAHLCRHDLLSLPGFVRDVSRLAATNHRGASFLV
KCLALLPDPVDKSVSDCRRSILRKYGYISPTKQCYPRGVCDKSIRIACSG
DVNAMDIQVDALISQGDTNVILTSIDSLCQRDLKSITGNVTEVQEKIATM
ASFMVSLGEAGTATEWVMDSLSRLDSGGLWNNECMASRRANLTIAFTQLA
SHLSRYIAACGYLESIFILMTNIWSRPWKTRDLETQLMRTLSSFARYYGC
RIRPVTSYWIRMAARNLKQIASDRNGLSCVPLALACMRGLHDPKPAGSIA
LADVLDLSKKENLGMNADDDVSQLASQTELNGDRISELRAYFTTINGAFP
IASLFGSGCTASDVFGSVVIPVLRDSFLGSECASSPKSSFSQHSATALHL
ICSHQNDMRLQGIRPSILLELVTLFFLGCYYGHTNTSESLEVLFSIKWVW
KILAPYASMELAKRLRNRVDFYWSRVVVGKKSTLDDKKRLPATLFNMVSL
LCRKQTGGDEEMVLKTIGTTSFGKVEMLLALLAQHRRESGEEDEFGLKVS
NQATKLNCKHLSRSLVLIALRCCPQEIFMQSVAGYIGHQASRGLQVSLDC
VLKGLIVDASQNDLRAVCLQWCRVDEAQRALLETAIGNLKPEHAGDVEDS
LFEQLVSASKLLTEAMAEGRVPSNIFRDGQIISDALESRLLCILRAPRLP
QRADWWRQRAQQIAKLVKSAAGLLTKSGISAACKLLDLCLRSIKELSISD
ENTQKDVAISQIFEWPINQELKKTLEAALVPAMRWVESSERNSIARLLPP
SSTYCTTSTNHVRVLNGDGSVVDNWMLLEGYGRGENQASAIPPENMWRQG
EMMIDKDRVVGTVHLKRTYSTFASLAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019035Mediator_Med12