Gchil5945.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5945.t1
Unique NameGchil5945.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length710
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:400959..403088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5945Gchil5945Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 400959..403088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5945.t1.stop1Gchil5945.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 400959..400961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5945.t1.CDS1Gchil5945.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 400959..403088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5945.t1.exon1Gchil5945.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 400959..403088 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5945.t1.start1Gchil5945.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 403086..403088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5945.t1Gchil5945.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 400959..403088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5945.t1 ID=Gchil5945.t1|Name=Gchil5945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp
MDEVLTLKPATAIRCLQAAVRDSQNSNRASYAAKNRPEWWKENVNVKLPD
DSVAKTGIFVSHSKCAWQPQQVQAALVLYYRHLHGEHHRSPSPPQHPHEH
SHPPHAASPPHPPRTPIKEEQEFAHNTDAAASTAAAQHRASDVPPRASTR
RQVKRAVTFNEHPIANVHHTPPPNVRGTRRRKIVLTPESSERSAPEDAVT
SPPSAEAQALKTEVRVEGTQTRARPSRSQQRGKTEATATTATTAGGSAAN
TTSVTEATESTRTRQHNGAIAKKKNKKKNKKKMGKKRRVQMTVEMVTKPS
ATPTASVQDERRNAQNDECDGKTESTSLRKIQSVLPARNGPDSETDDKTQ
STAFGRVKRRLDGTMSTSRSATSRSALRSLTNVADTKATQDGKRRKTARV
SKTRDENDESDELDKAATEKKRKSAGGTDEGDQYASASDMEGGNETGSED
GGMTEEERKERYEGVMVAVATLEKAHSDCVAELARSGARLAEELEVEREH
QANKLRQHYKMRLMHMRDAELGTRVGRMVYELHGDVGNLLVKEIAHAADS
IMTGEAGVSGGGDDDKDDKDDDEDEDEDGMHDSRTRSLRRAVAVATTERK
RVNRERSIATRASVRRSTRKAAQTATARTARILGALHATPTGYAQQQQQQ
QQESIEEREEGTGTETETETETVRAAVWDALLSEIARLRALGDGGAALET
LRVRLHAAL*
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spliced messenger RNA

>Gchil5945.t1 ID=Gchil5945.t1|Name=Gchil5945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00025225_pilon:400959..403088- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGGTGTTGACTCTGAAACCCGCCACGGCGATCAGGTGTTTGCA
AGCGGCCGTGCGAGACTCGCAGAACAGCAATCGCGCGTCGTACGCCGCCA
AGAATCGTCCCGAGTGGTGGAAGGAGAATGTGAACGTTAAGCTTCCAGAC
GACTCGGTCGCGAAGACAGGAATCTTTGTGTCCCATTCCAAGTGCGCTTG
GCAGCCGCAACAAGTGCAAGCGGCACTCGTGCTTTACTATCGCCACCTAC
ACGGAGAGCATCATCGTTCCCCATCACCACCCCAACACCCACATGAACAC
AGCCACCCGCCTCACGCGGCATCCCCGCCGCATCCGCCTCGAACGCCAAT
CAAAGAAGAGCAAGAATTCGCACACAACACCGATGCAGCGGCCTCGACCG
CAGCGGCGCAACACCGTGCGTCAGACGTCCCCCCGCGCGCGTCGACGCGC
CGCCAAGTGAAGAGAGCAGTGACATTCAACGAACATCCAATAGCAAACGT
TCATCACACCCCGCCGCCAAATGTGCGCGGCACAAGACGGCGCAAGATTG
TGCTGACGCCCGAGTCAAGCGAGCGAAGCGCGCCAGAGGACGCGGTAACG
TCACCGCCAAGCGCGGAGGCACAGGCGTTGAAAACCGAGGTGCGTGTGGA
GGGGACGCAAACGAGAGCGCGGCCGTCGCGGTCGCAGCAACGCGGAAAGA
CGGAGGCGACGGCGACGACGGCGACGACAGCGGGTGGAAGCGCGGCGAAC
ACGACAAGCGTGACAGAGGCGACAGAATCCACGCGCACGCGGCAGCACAA
CGGGGCAATAGCGAAGAAGAAGAACAAGAAGAAGAACAAGAAGAAGATGG
GCAAGAAACGTCGGGTACAAATGACGGTGGAGATGGTGACAAAGCCCTCA
GCGACACCAACAGCGAGCGTACAAGACGAGCGACGCAACGCGCAAAACGA
CGAGTGCGACGGAAAAACGGAAAGCACGTCGTTGCGCAAGATACAATCAG
TGTTACCCGCACGCAACGGCCCAGACTCGGAGACAGACGACAAGACGCAA
TCGACGGCATTCGGGCGCGTGAAGAGAAGGCTGGACGGGACGATGTCGAC
GTCAAGATCAGCGACGTCAAGATCAGCACTGCGCTCGCTAACGAACGTGG
CAGACACAAAGGCGACGCAAGACGGCAAACGACGCAAAACGGCGCGTGTG
TCGAAGACAAGAGATGAAAACGATGAAAGCGATGAGTTGGACAAGGCCGC
GACGGAGAAGAAAAGAAAAAGCGCAGGCGGGACAGACGAGGGGGATCAGT
ACGCAAGCGCAAGCGACATGGAGGGCGGAAATGAAACAGGGAGCGAGGAC
GGAGGAATGACGGAGGAAGAGAGAAAGGAGCGATACGAAGGGGTGATGGT
GGCAGTGGCGACACTGGAAAAGGCGCACAGCGACTGTGTGGCGGAGCTGG
CGCGAAGCGGAGCACGACTTGCGGAAGAACTGGAGGTGGAACGCGAGCAC
CAGGCAAACAAGCTAAGACAACACTACAAGATGCGTCTGATGCACATGCG
CGATGCGGAACTGGGCACGCGCGTCGGACGCATGGTATACGAGCTGCATG
GCGACGTGGGGAATCTATTGGTGAAGGAGATTGCGCACGCAGCCGACAGC
ATCATGACGGGCGAGGCGGGGGTGAGCGGCGGCGGCGACGACGACAAGGA
CGACAAGGACGACGACGAAGACGAAGACGAAGACGGTATGCACGACTCAC
GCACACGGTCACTTCGACGTGCCGTGGCTGTGGCAACAACGGAGCGCAAG
CGCGTGAACCGCGAACGCAGCATAGCAACGCGCGCCAGCGTACGACGCTC
GACGCGCAAAGCAGCGCAAACGGCGACGGCGCGCACGGCACGCATACTGG
GTGCTTTGCACGCGACGCCCACCGGCTACGCACAACAACAACAACAACAA
CAACAAGAGAGCATTGAAGAGAGGGAGGAGGGGACGGGGACGGAGACGGA
GACGGAGACGGAGACAGTACGCGCCGCGGTGTGGGACGCGTTACTGAGCG
AGATTGCTCGACTGCGCGCGCTGGGCGACGGCGGAGCAGCGCTTGAGACG
CTTCGCGTGCGGCTGCACGCGGCGCTGTGA
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protein sequence of Gchil5945.t1

>Gchil5945.t1 ID=Gchil5945.t1|Name=Gchil5945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=710bp
MDEVLTLKPATAIRCLQAAVRDSQNSNRASYAAKNRPEWWKENVNVKLPD
DSVAKTGIFVSHSKCAWQPQQVQAALVLYYRHLHGEHHRSPSPPQHPHEH
SHPPHAASPPHPPRTPIKEEQEFAHNTDAAASTAAAQHRASDVPPRASTR
RQVKRAVTFNEHPIANVHHTPPPNVRGTRRRKIVLTPESSERSAPEDAVT
SPPSAEAQALKTEVRVEGTQTRARPSRSQQRGKTEATATTATTAGGSAAN
TTSVTEATESTRTRQHNGAIAKKKNKKKNKKKMGKKRRVQMTVEMVTKPS
ATPTASVQDERRNAQNDECDGKTESTSLRKIQSVLPARNGPDSETDDKTQ
STAFGRVKRRLDGTMSTSRSATSRSALRSLTNVADTKATQDGKRRKTARV
SKTRDENDESDELDKAATEKKRKSAGGTDEGDQYASASDMEGGNETGSED
GGMTEEERKERYEGVMVAVATLEKAHSDCVAELARSGARLAEELEVEREH
QANKLRQHYKMRLMHMRDAELGTRVGRMVYELHGDVGNLLVKEIAHAADS
IMTGEAGVSGGGDDDKDDKDDDEDEDEDGMHDSRTRSLRRAVAVATTERK
RVNRERSIATRASVRRSTRKAAQTATARTARILGALHATPTGYAQQQQQQ
QQESIEEREEGTGTETETETETVRAAVWDALLSEIARLRALGDGGAALET
LRVRLHAAL*
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mRNA from alignment at tig00025225_pilon:400959..403088-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5945.t1 ID=Gchil5945.t1|Name=Gchil5945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00025225_pilon:400959..403088- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGTGTTGACTCTGAAACCCGCCACGGCGATCAGGTGTTTGCA
AGCGGCCGTGCGAGACTCGCAGAACAGCAATCGCGCGTCGTACGCCGCCA
AGAATCGTCCCGAGTGGTGGAAGGAGAATGTGAACGTTAAGCTTCCAGAC
GACTCGGTCGCGAAGACAGGAATCTTTGTGTCCCATTCCAAGTGCGCTTG
GCAGCCGCAACAAGTGCAAGCGGCACTCGTGCTTTACTATCGCCACCTAC
ACGGAGAGCATCATCGTTCCCCATCACCACCCCAACACCCACATGAACAC
AGCCACCCGCCTCACGCGGCATCCCCGCCGCATCCGCCTCGAACGCCAAT
CAAAGAAGAGCAAGAATTCGCACACAACACCGATGCAGCGGCCTCGACCG
CAGCGGCGCAACACCGTGCGTCAGACGTCCCCCCGCGCGCGTCGACGCGC
CGCCAAGTGAAGAGAGCAGTGACATTCAACGAACATCCAATAGCAAACGT
TCATCACACCCCGCCGCCAAATGTGCGCGGCACAAGACGGCGCAAGATTG
TGCTGACGCCCGAGTCAAGCGAGCGAAGCGCGCCAGAGGACGCGGTAACG
TCACCGCCAAGCGCGGAGGCACAGGCGTTGAAAACCGAGGTGCGTGTGGA
GGGGACGCAAACGAGAGCGCGGCCGTCGCGGTCGCAGCAACGCGGAAAGA
CGGAGGCGACGGCGACGACGGCGACGACAGCGGGTGGAAGCGCGGCGAAC
ACGACAAGCGTGACAGAGGCGACAGAATCCACGCGCACGCGGCAGCACAA
CGGGGCAATAGCGAAGAAGAAGAACAAGAAGAAGAACAAGAAGAAGATGG
GCAAGAAACGTCGGGTACAAATGACGGTGGAGATGGTGACAAAGCCCTCA
GCGACACCAACAGCGAGCGTACAAGACGAGCGACGCAACGCGCAAAACGA
CGAGTGCGACGGAAAAACGGAAAGCACGTCGTTGCGCAAGATACAATCAG
TGTTACCCGCACGCAACGGCCCAGACTCGGAGACAGACGACAAGACGCAA
TCGACGGCATTCGGGCGCGTGAAGAGAAGGCTGGACGGGACGATGTCGAC
GTCAAGATCAGCGACGTCAAGATCAGCACTGCGCTCGCTAACGAACGTGG
CAGACACAAAGGCGACGCAAGACGGCAAACGACGCAAAACGGCGCGTGTG
TCGAAGACAAGAGATGAAAACGATGAAAGCGATGAGTTGGACAAGGCCGC
GACGGAGAAGAAAAGAAAAAGCGCAGGCGGGACAGACGAGGGGGATCAGT
ACGCAAGCGCAAGCGACATGGAGGGCGGAAATGAAACAGGGAGCGAGGAC
GGAGGAATGACGGAGGAAGAGAGAAAGGAGCGATACGAAGGGGTGATGGT
GGCAGTGGCGACACTGGAAAAGGCGCACAGCGACTGTGTGGCGGAGCTGG
CGCGAAGCGGAGCACGACTTGCGGAAGAACTGGAGGTGGAACGCGAGCAC
CAGGCAAACAAGCTAAGACAACACTACAAGATGCGTCTGATGCACATGCG
CGATGCGGAACTGGGCACGCGCGTCGGACGCATGGTATACGAGCTGCATG
GCGACGTGGGGAATCTATTGGTGAAGGAGATTGCGCACGCAGCCGACAGC
ATCATGACGGGCGAGGCGGGGGTGAGCGGCGGCGGCGACGACGACAAGGA
CGACAAGGACGACGACGAAGACGAAGACGAAGACGGTATGCACGACTCAC
GCACACGGTCACTTCGACGTGCCGTGGCTGTGGCAACAACGGAGCGCAAG
CGCGTGAACCGCGAACGCAGCATAGCAACGCGCGCCAGCGTACGACGCTC
GACGCGCAAAGCAGCGCAAACGGCGACGGCGCGCACGGCACGCATACTGG
GTGCTTTGCACGCGACGCCCACCGGCTACGCACAACAACAACAACAACAA
CAACAAGAGAGCATTGAAGAGAGGGAGGAGGGGACGGGGACGGAGACGGA
GACGGAGACGGAGACAGTACGCGCCGCGGTGTGGGACGCGTTACTGAGCG
AGATTGCTCGACTGCGCGCGCTGGGCGACGGCGGAGCAGCGCTTGAGACG
CTTCGCGTGCGGCTGCACGCGGCGCTGTGA
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Coding sequence (CDS) from alignment at tig00025225_pilon:400959..403088-

>Gchil5945.t1 ID=Gchil5945.t1|Name=Gchil5945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2130bp|location=Sequence derived from alignment at tig00025225_pilon:400959..403088- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGGTGTTGACTCTGAAACCCGCCACGGCGATCAGGTGTTTGCA
AGCGGCCGTGCGAGACTCGCAGAACAGCAATCGCGCGTCGTACGCCGCCA
AGAATCGTCCCGAGTGGTGGAAGGAGAATGTGAACGTTAAGCTTCCAGAC
GACTCGGTCGCGAAGACAGGAATCTTTGTGTCCCATTCCAAGTGCGCTTG
GCAGCCGCAACAAGTGCAAGCGGCACTCGTGCTTTACTATCGCCACCTAC
ACGGAGAGCATCATCGTTCCCCATCACCACCCCAACACCCACATGAACAC
AGCCACCCGCCTCACGCGGCATCCCCGCCGCATCCGCCTCGAACGCCAAT
CAAAGAAGAGCAAGAATTCGCACACAACACCGATGCAGCGGCCTCGACCG
CAGCGGCGCAACACCGTGCGTCAGACGTCCCCCCGCGCGCGTCGACGCGC
CGCCAAGTGAAGAGAGCAGTGACATTCAACGAACATCCAATAGCAAACGT
TCATCACACCCCGCCGCCAAATGTGCGCGGCACAAGACGGCGCAAGATTG
TGCTGACGCCCGAGTCAAGCGAGCGAAGCGCGCCAGAGGACGCGGTAACG
TCACCGCCAAGCGCGGAGGCACAGGCGTTGAAAACCGAGGTGCGTGTGGA
GGGGACGCAAACGAGAGCGCGGCCGTCGCGGTCGCAGCAACGCGGAAAGA
CGGAGGCGACGGCGACGACGGCGACGACAGCGGGTGGAAGCGCGGCGAAC
ACGACAAGCGTGACAGAGGCGACAGAATCCACGCGCACGCGGCAGCACAA
CGGGGCAATAGCGAAGAAGAAGAACAAGAAGAAGAACAAGAAGAAGATGG
GCAAGAAACGTCGGGTACAAATGACGGTGGAGATGGTGACAAAGCCCTCA
GCGACACCAACAGCGAGCGTACAAGACGAGCGACGCAACGCGCAAAACGA
CGAGTGCGACGGAAAAACGGAAAGCACGTCGTTGCGCAAGATACAATCAG
TGTTACCCGCACGCAACGGCCCAGACTCGGAGACAGACGACAAGACGCAA
TCGACGGCATTCGGGCGCGTGAAGAGAAGGCTGGACGGGACGATGTCGAC
GTCAAGATCAGCGACGTCAAGATCAGCACTGCGCTCGCTAACGAACGTGG
CAGACACAAAGGCGACGCAAGACGGCAAACGACGCAAAACGGCGCGTGTG
TCGAAGACAAGAGATGAAAACGATGAAAGCGATGAGTTGGACAAGGCCGC
GACGGAGAAGAAAAGAAAAAGCGCAGGCGGGACAGACGAGGGGGATCAGT
ACGCAAGCGCAAGCGACATGGAGGGCGGAAATGAAACAGGGAGCGAGGAC
GGAGGAATGACGGAGGAAGAGAGAAAGGAGCGATACGAAGGGGTGATGGT
GGCAGTGGCGACACTGGAAAAGGCGCACAGCGACTGTGTGGCGGAGCTGG
CGCGAAGCGGAGCACGACTTGCGGAAGAACTGGAGGTGGAACGCGAGCAC
CAGGCAAACAAGCTAAGACAACACTACAAGATGCGTCTGATGCACATGCG
CGATGCGGAACTGGGCACGCGCGTCGGACGCATGGTATACGAGCTGCATG
GCGACGTGGGGAATCTATTGGTGAAGGAGATTGCGCACGCAGCCGACAGC
ATCATGACGGGCGAGGCGGGGGTGAGCGGCGGCGGCGACGACGACAAGGA
CGACAAGGACGACGACGAAGACGAAGACGAAGACGGTATGCACGACTCAC
GCACACGGTCACTTCGACGTGCCGTGGCTGTGGCAACAACGGAGCGCAAG
CGCGTGAACCGCGAACGCAGCATAGCAACGCGCGCCAGCGTACGACGCTC
GACGCGCAAAGCAGCGCAAACGGCGACGGCGCGCACGGCACGCATACTGG
GTGCTTTGCACGCGACGCCCACCGGCTACGCACAACAACAACAACAACAA
CAACAAGAGAGCATTGAAGAGAGGGAGGAGGGGACGGGGACGGAGACGGA
GACGGAGACGGAGACAGTACGCGCCGCGGTGTGGGACGCGTTACTGAGCG
AGATTGCTCGACTGCGCGCGCTGGGCGACGGCGGAGCAGCGCTTGAGACG
CTTCGCGTGCGGCTGCACGCGGCGCTGTGA
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