Gchil5934.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5934.t1
Unique Name	Gchil5934.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025225_pilon	contig	tig00025225_pilon:322227..323138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005107475.1
Preferred name	TECR
PFAMs	Steroid_dh,ubiquitin
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00052,RC00120
KEGG ko	ko:K10258
KEGG Reaction	R07761,R09449,R10828
KEGG Pathway	ko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG Module	M00415
GOs	GO:0000038,GO:0003674,GO:0003824,GO:0003995,GO:0004466,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016627,GO:0017099,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576
Evalue	1.58e-95
EggNOG OGs	KOG1639@1\|root,KOG1639@2759\|Eukaryota,38FVN@33154\|Opisthokonta,3B95W@33208\|Metazoa,3CTSE@33213\|Bilateria
EC	1.3.1.93
Description	very-long-chain enoyl-CoA
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5934	Gchil5934	Gracilaria chilensis NLEC103_M9 male	gene	tig00025225_pilon 322227..323138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5934.t1.start1	Gchil5934.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025225_pilon 322227..322229 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5934.t1.CDS1	Gchil5934.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025225_pilon 322227..323138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5934.t1.exon1	Gchil5934.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025225_pilon 322227..323138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5934.t1.stop1	Gchil5934.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025225_pilon 323136..323138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5934.t1	Gchil5934.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025225_pilon 322227..323138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025225_pilon:322227..323138+
coding sequence from alignment at tig00025225_pilon:322227..323138+

mRNA sequence

>Gchil5934.t1 ID=Gchil5934.t1|Name=Gchil5934.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MKISVESRSGRDLGSYVLQDGSSVAALQKAFHLTHRKYYPDRQRFYAKQD
SSTAKKPAAISAEDVLADGCTLVFKDLGPQILWKTVFVVEYLGPLLLYPL
FYIQPSWIYGSSYPPVSPEAREVQLAALIAWTFHYAKREFETLFIHRFSH
ATMPLRNLFKNSSYYWGFAAYVAYFVNHPLYTPPSVGQMVVGMSIFYLME
FGNFGAHWTLRMLRPPGTKVRKIPRGGLFEFVSCPNYTMEIMSWLGFNIM
TKTIPGILFMLAGAFQMLVWAQGKHRRYKKEFDGKGNRPLYPPNRKILIP
FIY*

spliced messenger RNA

>Gchil5934.t1 ID=Gchil5934.t1|Name=Gchil5934.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00025225_pilon:322227..323138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTTCGGTCGAATCACGAAGCGGACGCGATCTCGGGTCATATGT
GCTTCAAGATGGTAGCTCTGTAGCTGCCCTCCAAAAGGCTTTTCACTTAA
CTCACAGGAAGTACTACCCCGATCGACAGCGTTTCTATGCAAAGCAAGAT
TCCAGTACTGCCAAAAAGCCGGCTGCAATATCTGCTGAAGACGTTTTGGC
AGATGGTTGCACTCTTGTCTTCAAAGATCTGGGCCCGCAAATTCTCTGGA
AGACTGTGTTCGTTGTAGAGTATCTAGGTCCTTTGTTGCTTTATCCTTTA
TTTTATATTCAGCCTTCTTGGATCTATGGTTCCTCCTATCCTCCAGTCTC
CCCGGAAGCCAGGGAGGTACAACTTGCTGCTCTGATCGCATGGACTTTTC
ATTACGCCAAGAGGGAATTTGAAACTCTTTTCATTCACCGTTTTTCGCAT
GCCACCATGCCACTTCGAAACTTGTTTAAAAACTCCTCCTACTATTGGGG
GTTTGCAGCATACGTTGCATACTTTGTTAATCATCCATTGTACACACCTC
CATCGGTAGGACAAATGGTGGTTGGTATGAGTATCTTCTATCTCATGGAG
TTTGGAAATTTCGGTGCCCATTGGACATTGAGAATGTTGCGTCCGCCTGG
AACCAAAGTTAGAAAGATTCCTCGAGGCGGTTTGTTTGAATTTGTTTCAT
GTCCGAATTATACTATGGAGATTATGTCTTGGTTAGGGTTTAATATCATG
ACGAAGACCATTCCTGGAATACTTTTCATGCTCGCCGGTGCGTTTCAAAT
GCTCGTTTGGGCCCAAGGGAAGCATCGCCGCTACAAAAAGGAGTTCGATG
GAAAGGGTAATCGTCCTTTGTATCCACCAAACAGGAAGATTCTTATTCCA
TTCATCTATTGA

protein sequence of Gchil5934.t1

>Gchil5934.t1 ID=Gchil5934.t1|Name=Gchil5934.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MKISVESRSGRDLGSYVLQDGSSVAALQKAFHLTHRKYYPDRQRFYAKQD
SSTAKKPAAISAEDVLADGCTLVFKDLGPQILWKTVFVVEYLGPLLLYPL
FYIQPSWIYGSSYPPVSPEAREVQLAALIAWTFHYAKREFETLFIHRFSH
ATMPLRNLFKNSSYYWGFAAYVAYFVNHPLYTPPSVGQMVVGMSIFYLME
FGNFGAHWTLRMLRPPGTKVRKIPRGGLFEFVSCPNYTMEIMSWLGFNIM
TKTIPGILFMLAGAFQMLVWAQGKHRRYKKEFDGKGNRPLYPPNRKILIP
FIY*

mRNA from alignment at tig00025225_pilon:322227..323138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5934.t1 ID=Gchil5934.t1|Name=Gchil5934.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00025225_pilon:322227..323138+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATTTCGGTCGAATCACGAAGCGGACGCGATCTCGGGTCATATGT
GCTTCAAGATGGTAGCTCTGTAGCTGCCCTCCAAAAGGCTTTTCACTTAA
CTCACAGGAAGTACTACCCCGATCGACAGCGTTTCTATGCAAAGCAAGAT
TCCAGTACTGCCAAAAAGCCGGCTGCAATATCTGCTGAAGACGTTTTGGC
AGATGGTTGCACTCTTGTCTTCAAAGATCTGGGCCCGCAAATTCTCTGGA
AGACTGTGTTCGTTGTAGAGTATCTAGGTCCTTTGTTGCTTTATCCTTTA
TTTTATATTCAGCCTTCTTGGATCTATGGTTCCTCCTATCCTCCAGTCTC
CCCGGAAGCCAGGGAGGTACAACTTGCTGCTCTGATCGCATGGACTTTTC
ATTACGCCAAGAGGGAATTTGAAACTCTTTTCATTCACCGTTTTTCGCAT
GCCACCATGCCACTTCGAAACTTGTTTAAAAACTCCTCCTACTATTGGGG
GTTTGCAGCATACGTTGCATACTTTGTTAATCATCCATTGTACACACCTC
CATCGGTAGGACAAATGGTGGTTGGTATGAGTATCTTCTATCTCATGGAG
TTTGGAAATTTCGGTGCCCATTGGACATTGAGAATGTTGCGTCCGCCTGG
AACCAAAGTTAGAAAGATTCCTCGAGGCGGTTTGTTTGAATTTGTTTCAT
GTCCGAATTATACTATGGAGATTATGTCTTGGTTAGGGTTTAATATCATG
ACGAAGACCATTCCTGGAATACTTTTCATGCTCGCCGGTGCGTTTCAAAT
GCTCGTTTGGGCCCAAGGGAAGCATCGCCGCTACAAAAAGGAGTTCGATG
GAAAGGGTAATCGTCCTTTGTATCCACCAAACAGGAAGATTCTTATTCCA
TTCATCTATTGA

Coding sequence (CDS) from alignment at tig00025225_pilon:322227..323138+

>Gchil5934.t1 ID=Gchil5934.t1|Name=Gchil5934.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00025225_pilon:322227..323138+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATTTCGGTCGAATCACGAAGCGGACGCGATCTCGGGTCATATGT
GCTTCAAGATGGTAGCTCTGTAGCTGCCCTCCAAAAGGCTTTTCACTTAA
CTCACAGGAAGTACTACCCCGATCGACAGCGTTTCTATGCAAAGCAAGAT
TCCAGTACTGCCAAAAAGCCGGCTGCAATATCTGCTGAAGACGTTTTGGC
AGATGGTTGCACTCTTGTCTTCAAAGATCTGGGCCCGCAAATTCTCTGGA
AGACTGTGTTCGTTGTAGAGTATCTAGGTCCTTTGTTGCTTTATCCTTTA
TTTTATATTCAGCCTTCTTGGATCTATGGTTCCTCCTATCCTCCAGTCTC
CCCGGAAGCCAGGGAGGTACAACTTGCTGCTCTGATCGCATGGACTTTTC
ATTACGCCAAGAGGGAATTTGAAACTCTTTTCATTCACCGTTTTTCGCAT
GCCACCATGCCACTTCGAAACTTGTTTAAAAACTCCTCCTACTATTGGGG
GTTTGCAGCATACGTTGCATACTTTGTTAATCATCCATTGTACACACCTC
CATCGGTAGGACAAATGGTGGTTGGTATGAGTATCTTCTATCTCATGGAG
TTTGGAAATTTCGGTGCCCATTGGACATTGAGAATGTTGCGTCCGCCTGG
AACCAAAGTTAGAAAGATTCCTCGAGGCGGTTTGTTTGAATTTGTTTCAT
GTCCGAATTATACTATGGAGATTATGTCTTGGTTAGGGTTTAATATCATG
ACGAAGACCATTCCTGGAATACTTTTCATGCTCGCCGGTGCGTTTCAAAT
GCTCGTTTGGGCCCAAGGGAAGCATCGCCGCTACAAAAAGGAGTTCGATG
GAAAGGGTAATCGTCCTTTGTATCCACCAAACAGGAAGATTCTTATTCCA
TTCATCTATTGA