Gchil2065.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2065.t1
Unique NameGchil2065.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:377459..378619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2065Gchil2065Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 377459..378619 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2065.t1.start1Gchil2065.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 377459..377461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2065.t1.CDS1Gchil2065.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 377459..378619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2065.t1.exon1Gchil2065.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 377459..378619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2065.t1.stop1Gchil2065.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 378617..378619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2065.t1Gchil2065.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 377459..378619 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2065.t1 ID=Gchil2065.t1|Name=Gchil2065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp
MMICYSSVTIALCSMILPLVGGLPFSSIGLGVGKASQGDVFGTSNVYGSG
NFASIGTGASGKGVSGSTSVISPVQATDKDVSLPIGSPEAAIDIELSSIL
NRGLQAAVPDYRDTSGSSEKSYATGASENKTSHPNTRDSSEKPGIANHPK
VCWTMSKRCCYEEVQKGYECKDFYAHKYTRCHPVIEYEAVCGKIEERPAH
HPRPKGRVKYEETVLKNYDARYGPHVTGYPENGESEYYKVDTIPVKPRGV
SGTPVSAPQSYQSKSGSTTNEAYMAEEDGEDIVSIVPYETKSNRDQQYGA
LGDSKGHEKKAANLIPKSTENATAGAEGSYEVKPQPTSVQSLSKTSAANA
DTGSGGNGPGVSEQSLETYNVGTAQGGNGPSYRILK*
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spliced messenger RNA

>Gchil2065.t1 ID=Gchil2065.t1|Name=Gchil2065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000019_pilon:377459..378619+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATTTGCTACAGTTCAGTGACCATTGCGCTTTGTTCTATGATCCT
TCCCCTAGTCGGAGGCTTGCCTTTTTCATCCATTGGACTCGGGGTTGGAA
AAGCTTCACAGGGGGATGTTTTTGGGACTTCGAATGTCTATGGTAGCGGA
AATTTCGCGAGCATCGGAACAGGAGCGTCAGGAAAAGGGGTGAGTGGGTC
AACTTCTGTCATTTCTCCAGTACAGGCAACAGATAAGGATGTATCCCTTC
CCATTGGAAGCCCGGAAGCAGCAATAGACATTGAACTTTCTTCTATTCTC
AACAGAGGATTGCAAGCTGCCGTACCTGATTACAGAGATACCTCTGGGTC
TTCTGAAAAATCATACGCGACTGGTGCCTCCGAAAACAAGACTTCACACC
CCAATACAAGAGATTCTTCGGAAAAACCAGGAATTGCCAACCATCCAAAA
GTATGTTGGACAATGTCAAAGCGGTGTTGTTATGAAGAAGTGCAGAAAGG
ATACGAATGTAAGGACTTTTACGCACACAAATATACAAGATGCCACCCGG
TCATTGAATATGAAGCAGTTTGCGGAAAAATTGAAGAACGGCCTGCGCAT
CATCCTCGACCAAAGGGGCGGGTCAAATATGAAGAAACGGTGCTAAAAAA
CTACGACGCAAGATATGGGCCGCATGTAACCGGCTATCCGGAGAACGGAG
AGAGTGAATACTACAAAGTAGACACTATTCCGGTCAAGCCTCGAGGAGTT
TCAGGAACTCCTGTTTCCGCGCCTCAATCGTATCAGTCAAAAAGTGGAAG
TACAACAAATGAAGCATACATGGCTGAAGAGGACGGGGAGGATATCGTTT
CCATTGTCCCGTATGAGACGAAATCAAATAGAGACCAGCAATACGGAGCT
CTCGGAGATTCAAAAGGCCATGAGAAGAAAGCGGCAAACCTCATTCCGAA
GAGTACAGAAAACGCCACCGCCGGCGCAGAGGGTTCGTACGAGGTAAAAC
CGCAACCCACATCAGTCCAAAGTTTGAGTAAGACCTCTGCAGCCAACGCC
GACACAGGCAGTGGGGGAAATGGGCCGGGCGTTTCGGAACAATCGCTGGA
GACTTACAACGTCGGAACTGCTCAGGGAGGCAACGGTCCTTCATACAGGA
TACTGAAATAG
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protein sequence of Gchil2065.t1

>Gchil2065.t1 ID=Gchil2065.t1|Name=Gchil2065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=387bp
MMICYSSVTIALCSMILPLVGGLPFSSIGLGVGKASQGDVFGTSNVYGSG
NFASIGTGASGKGVSGSTSVISPVQATDKDVSLPIGSPEAAIDIELSSIL
NRGLQAAVPDYRDTSGSSEKSYATGASENKTSHPNTRDSSEKPGIANHPK
VCWTMSKRCCYEEVQKGYECKDFYAHKYTRCHPVIEYEAVCGKIEERPAH
HPRPKGRVKYEETVLKNYDARYGPHVTGYPENGESEYYKVDTIPVKPRGV
SGTPVSAPQSYQSKSGSTTNEAYMAEEDGEDIVSIVPYETKSNRDQQYGA
LGDSKGHEKKAANLIPKSTENATAGAEGSYEVKPQPTSVQSLSKTSAANA
DTGSGGNGPGVSEQSLETYNVGTAQGGNGPSYRILK*
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mRNA from alignment at tig00000019_pilon:377459..378619+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2065.t1 ID=Gchil2065.t1|Name=Gchil2065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000019_pilon:377459..378619+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGATTTGCTACAGTTCAGTGACCATTGCGCTTTGTTCTATGATCCT
TCCCCTAGTCGGAGGCTTGCCTTTTTCATCCATTGGACTCGGGGTTGGAA
AAGCTTCACAGGGGGATGTTTTTGGGACTTCGAATGTCTATGGTAGCGGA
AATTTCGCGAGCATCGGAACAGGAGCGTCAGGAAAAGGGGTGAGTGGGTC
AACTTCTGTCATTTCTCCAGTACAGGCAACAGATAAGGATGTATCCCTTC
CCATTGGAAGCCCGGAAGCAGCAATAGACATTGAACTTTCTTCTATTCTC
AACAGAGGATTGCAAGCTGCCGTACCTGATTACAGAGATACCTCTGGGTC
TTCTGAAAAATCATACGCGACTGGTGCCTCCGAAAACAAGACTTCACACC
CCAATACAAGAGATTCTTCGGAAAAACCAGGAATTGCCAACCATCCAAAA
GTATGTTGGACAATGTCAAAGCGGTGTTGTTATGAAGAAGTGCAGAAAGG
ATACGAATGTAAGGACTTTTACGCACACAAATATACAAGATGCCACCCGG
TCATTGAATATGAAGCAGTTTGCGGAAAAATTGAAGAACGGCCTGCGCAT
CATCCTCGACCAAAGGGGCGGGTCAAATATGAAGAAACGGTGCTAAAAAA
CTACGACGCAAGATATGGGCCGCATGTAACCGGCTATCCGGAGAACGGAG
AGAGTGAATACTACAAAGTAGACACTATTCCGGTCAAGCCTCGAGGAGTT
TCAGGAACTCCTGTTTCCGCGCCTCAATCGTATCAGTCAAAAAGTGGAAG
TACAACAAATGAAGCATACATGGCTGAAGAGGACGGGGAGGATATCGTTT
CCATTGTCCCGTATGAGACGAAATCAAATAGAGACCAGCAATACGGAGCT
CTCGGAGATTCAAAAGGCCATGAGAAGAAAGCGGCAAACCTCATTCCGAA
GAGTACAGAAAACGCCACCGCCGGCGCAGAGGGTTCGTACGAGGTAAAAC
CGCAACCCACATCAGTCCAAAGTTTGAGTAAGACCTCTGCAGCCAACGCC
GACACAGGCAGTGGGGGAAATGGGCCGGGCGTTTCGGAACAATCGCTGGA
GACTTACAACGTCGGAACTGCTCAGGGAGGCAACGGTCCTTCATACAGGA
TACTGAAATAG
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Coding sequence (CDS) from alignment at tig00000019_pilon:377459..378619+

>Gchil2065.t1 ID=Gchil2065.t1|Name=Gchil2065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000019_pilon:377459..378619+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGATTTGCTACAGTTCAGTGACCATTGCGCTTTGTTCTATGATCCT
TCCCCTAGTCGGAGGCTTGCCTTTTTCATCCATTGGACTCGGGGTTGGAA
AAGCTTCACAGGGGGATGTTTTTGGGACTTCGAATGTCTATGGTAGCGGA
AATTTCGCGAGCATCGGAACAGGAGCGTCAGGAAAAGGGGTGAGTGGGTC
AACTTCTGTCATTTCTCCAGTACAGGCAACAGATAAGGATGTATCCCTTC
CCATTGGAAGCCCGGAAGCAGCAATAGACATTGAACTTTCTTCTATTCTC
AACAGAGGATTGCAAGCTGCCGTACCTGATTACAGAGATACCTCTGGGTC
TTCTGAAAAATCATACGCGACTGGTGCCTCCGAAAACAAGACTTCACACC
CCAATACAAGAGATTCTTCGGAAAAACCAGGAATTGCCAACCATCCAAAA
GTATGTTGGACAATGTCAAAGCGGTGTTGTTATGAAGAAGTGCAGAAAGG
ATACGAATGTAAGGACTTTTACGCACACAAATATACAAGATGCCACCCGG
TCATTGAATATGAAGCAGTTTGCGGAAAAATTGAAGAACGGCCTGCGCAT
CATCCTCGACCAAAGGGGCGGGTCAAATATGAAGAAACGGTGCTAAAAAA
CTACGACGCAAGATATGGGCCGCATGTAACCGGCTATCCGGAGAACGGAG
AGAGTGAATACTACAAAGTAGACACTATTCCGGTCAAGCCTCGAGGAGTT
TCAGGAACTCCTGTTTCCGCGCCTCAATCGTATCAGTCAAAAAGTGGAAG
TACAACAAATGAAGCATACATGGCTGAAGAGGACGGGGAGGATATCGTTT
CCATTGTCCCGTATGAGACGAAATCAAATAGAGACCAGCAATACGGAGCT
CTCGGAGATTCAAAAGGCCATGAGAAGAAAGCGGCAAACCTCATTCCGAA
GAGTACAGAAAACGCCACCGCCGGCGCAGAGGGTTCGTACGAGGTAAAAC
CGCAACCCACATCAGTCCAAAGTTTGAGTAAGACCTCTGCAGCCAACGCC
GACACAGGCAGTGGGGGAAATGGGCCGGGCGTTTCGGAACAATCGCTGGA
GACTTACAACGTCGGAACTGCTCAGGGAGGCAACGGTCCTTCATACAGGA
TACTGAAATAG
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