Gchil3747.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3747.t1
Unique NameGchil3747.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1179382..1181067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog303518.XP_005740659.1
Preferred nameDUS3L
PFAMsDus,zf-CCCH
Max annot lvl33208|Metazoa
KEGG koko:K05544
GOsGO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue3.9e-151
EggNOG OGsCOG0042@1|root,KOG2333@2759|Eukaryota,38F5X@33154|Opisthokonta,3BFFI@33208|Metazoa,3CZXN@33213|Bilateria,485N2@7711|Chordata,490TF@7742|Vertebrata,49QST@7898|Actinopterygii
EC1.3.1.89
DescriptionDihydrouridine synthase 3-like (S. cerevisiae)
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3747Gchil3747Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 1179382..1181067 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3747.t1.stop1Gchil3747.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 1179382..1179384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3747.t1.CDS1Gchil3747.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 1179382..1181067 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3747.t1.exon1Gchil3747.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 1179382..1181067 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3747.t1.start1Gchil3747.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 1181065..1181067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3747.t1Gchil3747.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 1179382..1181067 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3747.t1 ID=Gchil3747.t1|Name=Gchil3747.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=562bp
MGSTFSRAEQTPPAQFATPPPPNSSRKRTVTLQPEFKSSKRPRPSHQPKL
PSIQATPDGAHKPEHNAPLEDREEDIRSFVTFDAPVKPQYLLRTRRNEDG
TLQLDTRGVALYSPAFFDRLSQSALVALPEHGKLSARLEMREDQRNFLDF
QLRKQLRKRQVEFPRSKKILPTWNEQLFESGAHEGVAGLTRTKKGIDMRE
KLYLAPLTTVGNLPFRRVCKRLGADVTCGEMALAVNLLKGQCSEWALLRR
HKSEDLFGVQIAGSNVEVVTRAAELIADKCEIDFVELNAGCPIEIVFNRG
GGCSLMQRRNKFKRMVWSINGVVDIPVGVKVRMGVSLRSRNAHELIPDLA
AVGASWVTVHGRTRKQRYSKLADWTYIENECAPAARRSGIPLLGNGDVYN
WRDATPYFEGGKHEGCGVDTVMIARGALIKPWLFTEIKERRDWDIRSSER
LELYKEFTRYGLDHWGADERGVEKTRRFLLEWLSFLYRYVPIGIVEGGAD
TVLTMSHRAPFFRGRDELETLLGSPKSQDWVRITEMLLGKTPEQFQFAPR
HKSNAWETTKS*
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spliced messenger RNA

>Gchil3747.t1 ID=Gchil3747.t1|Name=Gchil3747.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00025222_pilon:1179382..1181067- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCCACATTCTCAAGGGCAGAACAAACTCCCCCGGCGCAATTCGC
CACACCACCCCCGCCCAATTCATCGCGAAAACGCACCGTCACTCTACAGC
CCGAGTTCAAGTCGAGCAAGCGCCCTCGACCCTCGCATCAGCCAAAACTT
CCATCCATACAAGCCACCCCCGATGGCGCCCATAAGCCCGAACACAATGC
ACCACTTGAAGATCGCGAGGAAGACATCCGCTCCTTCGTGACCTTCGACG
CCCCTGTCAAGCCGCAGTACCTTTTACGAACGCGAAGGAATGAGGATGGC
ACTCTTCAGTTAGATACTCGGGGCGTTGCCCTGTACTCGCCAGCTTTCTT
TGATAGACTATCCCAGTCAGCTCTCGTCGCGTTGCCAGAGCATGGTAAAT
TGTCGGCGCGTCTTGAGATGCGCGAAGATCAGCGCAATTTTCTGGACTTC
CAGCTGCGAAAGCAGCTAAGGAAGCGGCAGGTCGAGTTTCCGCGCAGCAA
GAAAATCTTGCCTACGTGGAATGAGCAGCTGTTCGAAAGTGGCGCCCATG
AGGGCGTTGCTGGCTTGACGCGCACAAAGAAGGGGATTGACATGCGCGAA
AAGTTATATCTTGCACCACTGACCACTGTCGGAAATCTTCCGTTCCGTCG
CGTATGCAAAAGACTTGGTGCCGACGTCACTTGCGGGGAAATGGCGCTTG
CAGTCAACTTGTTGAAGGGTCAGTGTAGCGAGTGGGCACTGCTAAGGCGC
CATAAGAGTGAAGATCTGTTTGGAGTACAAATCGCTGGATCCAACGTAGA
AGTGGTCACGCGTGCAGCTGAGCTGATTGCAGACAAGTGTGAAATCGATT
TTGTCGAACTGAATGCGGGGTGCCCGATTGAAATCGTCTTTAACAGGGGA
GGTGGCTGTAGTCTGATGCAGAGACGGAACAAGTTTAAGAGAATGGTGTG
GAGCATCAACGGAGTCGTGGATATTCCAGTTGGGGTGAAGGTGCGTATGG
GCGTCTCTTTACGCTCTCGAAATGCGCACGAGTTGATTCCGGATTTGGCT
GCTGTGGGGGCAAGTTGGGTAACTGTTCACGGTCGAACTCGAAAACAACG
GTATTCTAAGCTTGCTGACTGGACTTACATCGAAAACGAATGTGCCCCTG
CTGCTCGGCGCTCTGGTATTCCGCTTTTAGGAAACGGCGATGTGTACAAT
TGGCGAGATGCAACTCCCTATTTCGAGGGCGGCAAACATGAAGGATGTGG
TGTGGATACTGTTATGATCGCCCGTGGTGCACTGATTAAACCATGGCTGT
TTACAGAGATTAAGGAAAGACGTGACTGGGACATACGCAGCTCGGAAAGG
CTTGAACTTTACAAAGAATTCACGCGCTATGGCCTGGATCACTGGGGTGC
TGACGAGCGAGGGGTAGAGAAGACCCGCCGATTCCTGCTGGAGTGGCTGT
CTTTCTTATACCGTTATGTACCTATAGGTATCGTTGAAGGCGGTGCAGAT
ACAGTACTCACTATGTCCCATAGAGCGCCATTTTTTCGTGGCCGTGATGA
ACTTGAAACGTTACTAGGTTCTCCGAAAAGCCAGGATTGGGTAAGAATCA
CAGAGATGCTGCTCGGAAAGACTCCAGAACAATTCCAATTTGCGCCCCGA
CACAAGAGCAATGCTTGGGAAACCACGAAGTCATGA
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protein sequence of Gchil3747.t1

>Gchil3747.t1 ID=Gchil3747.t1|Name=Gchil3747.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=562bp
MGSTFSRAEQTPPAQFATPPPPNSSRKRTVTLQPEFKSSKRPRPSHQPKL
PSIQATPDGAHKPEHNAPLEDREEDIRSFVTFDAPVKPQYLLRTRRNEDG
TLQLDTRGVALYSPAFFDRLSQSALVALPEHGKLSARLEMREDQRNFLDF
QLRKQLRKRQVEFPRSKKILPTWNEQLFESGAHEGVAGLTRTKKGIDMRE
KLYLAPLTTVGNLPFRRVCKRLGADVTCGEMALAVNLLKGQCSEWALLRR
HKSEDLFGVQIAGSNVEVVTRAAELIADKCEIDFVELNAGCPIEIVFNRG
GGCSLMQRRNKFKRMVWSINGVVDIPVGVKVRMGVSLRSRNAHELIPDLA
AVGASWVTVHGRTRKQRYSKLADWTYIENECAPAARRSGIPLLGNGDVYN
WRDATPYFEGGKHEGCGVDTVMIARGALIKPWLFTEIKERRDWDIRSSER
LELYKEFTRYGLDHWGADERGVEKTRRFLLEWLSFLYRYVPIGIVEGGAD
TVLTMSHRAPFFRGRDELETLLGSPKSQDWVRITEMLLGKTPEQFQFAPR
HKSNAWETTKS*
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mRNA from alignment at tig00025222_pilon:1179382..1181067-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3747.t1 ID=Gchil3747.t1|Name=Gchil3747.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00025222_pilon:1179382..1181067- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCACATTCTCAAGGGCAGAACAAACTCCCCCGGCGCAATTCGC
CACACCACCCCCGCCCAATTCATCGCGAAAACGCACCGTCACTCTACAGC
CCGAGTTCAAGTCGAGCAAGCGCCCTCGACCCTCGCATCAGCCAAAACTT
CCATCCATACAAGCCACCCCCGATGGCGCCCATAAGCCCGAACACAATGC
ACCACTTGAAGATCGCGAGGAAGACATCCGCTCCTTCGTGACCTTCGACG
CCCCTGTCAAGCCGCAGTACCTTTTACGAACGCGAAGGAATGAGGATGGC
ACTCTTCAGTTAGATACTCGGGGCGTTGCCCTGTACTCGCCAGCTTTCTT
TGATAGACTATCCCAGTCAGCTCTCGTCGCGTTGCCAGAGCATGGTAAAT
TGTCGGCGCGTCTTGAGATGCGCGAAGATCAGCGCAATTTTCTGGACTTC
CAGCTGCGAAAGCAGCTAAGGAAGCGGCAGGTCGAGTTTCCGCGCAGCAA
GAAAATCTTGCCTACGTGGAATGAGCAGCTGTTCGAAAGTGGCGCCCATG
AGGGCGTTGCTGGCTTGACGCGCACAAAGAAGGGGATTGACATGCGCGAA
AAGTTATATCTTGCACCACTGACCACTGTCGGAAATCTTCCGTTCCGTCG
CGTATGCAAAAGACTTGGTGCCGACGTCACTTGCGGGGAAATGGCGCTTG
CAGTCAACTTGTTGAAGGGTCAGTGTAGCGAGTGGGCACTGCTAAGGCGC
CATAAGAGTGAAGATCTGTTTGGAGTACAAATCGCTGGATCCAACGTAGA
AGTGGTCACGCGTGCAGCTGAGCTGATTGCAGACAAGTGTGAAATCGATT
TTGTCGAACTGAATGCGGGGTGCCCGATTGAAATCGTCTTTAACAGGGGA
GGTGGCTGTAGTCTGATGCAGAGACGGAACAAGTTTAAGAGAATGGTGTG
GAGCATCAACGGAGTCGTGGATATTCCAGTTGGGGTGAAGGTGCGTATGG
GCGTCTCTTTACGCTCTCGAAATGCGCACGAGTTGATTCCGGATTTGGCT
GCTGTGGGGGCAAGTTGGGTAACTGTTCACGGTCGAACTCGAAAACAACG
GTATTCTAAGCTTGCTGACTGGACTTACATCGAAAACGAATGTGCCCCTG
CTGCTCGGCGCTCTGGTATTCCGCTTTTAGGAAACGGCGATGTGTACAAT
TGGCGAGATGCAACTCCCTATTTCGAGGGCGGCAAACATGAAGGATGTGG
TGTGGATACTGTTATGATCGCCCGTGGTGCACTGATTAAACCATGGCTGT
TTACAGAGATTAAGGAAAGACGTGACTGGGACATACGCAGCTCGGAAAGG
CTTGAACTTTACAAAGAATTCACGCGCTATGGCCTGGATCACTGGGGTGC
TGACGAGCGAGGGGTAGAGAAGACCCGCCGATTCCTGCTGGAGTGGCTGT
CTTTCTTATACCGTTATGTACCTATAGGTATCGTTGAAGGCGGTGCAGAT
ACAGTACTCACTATGTCCCATAGAGCGCCATTTTTTCGTGGCCGTGATGA
ACTTGAAACGTTACTAGGTTCTCCGAAAAGCCAGGATTGGGTAAGAATCA
CAGAGATGCTGCTCGGAAAGACTCCAGAACAATTCCAATTTGCGCCCCGA
CACAAGAGCAATGCTTGGGAAACCACGAAGTCATGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:1179382..1181067-

>Gchil3747.t1 ID=Gchil3747.t1|Name=Gchil3747.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00025222_pilon:1179382..1181067- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTCCACATTCTCAAGGGCAGAACAAACTCCCCCGGCGCAATTCGC
CACACCACCCCCGCCCAATTCATCGCGAAAACGCACCGTCACTCTACAGC
CCGAGTTCAAGTCGAGCAAGCGCCCTCGACCCTCGCATCAGCCAAAACTT
CCATCCATACAAGCCACCCCCGATGGCGCCCATAAGCCCGAACACAATGC
ACCACTTGAAGATCGCGAGGAAGACATCCGCTCCTTCGTGACCTTCGACG
CCCCTGTCAAGCCGCAGTACCTTTTACGAACGCGAAGGAATGAGGATGGC
ACTCTTCAGTTAGATACTCGGGGCGTTGCCCTGTACTCGCCAGCTTTCTT
TGATAGACTATCCCAGTCAGCTCTCGTCGCGTTGCCAGAGCATGGTAAAT
TGTCGGCGCGTCTTGAGATGCGCGAAGATCAGCGCAATTTTCTGGACTTC
CAGCTGCGAAAGCAGCTAAGGAAGCGGCAGGTCGAGTTTCCGCGCAGCAA
GAAAATCTTGCCTACGTGGAATGAGCAGCTGTTCGAAAGTGGCGCCCATG
AGGGCGTTGCTGGCTTGACGCGCACAAAGAAGGGGATTGACATGCGCGAA
AAGTTATATCTTGCACCACTGACCACTGTCGGAAATCTTCCGTTCCGTCG
CGTATGCAAAAGACTTGGTGCCGACGTCACTTGCGGGGAAATGGCGCTTG
CAGTCAACTTGTTGAAGGGTCAGTGTAGCGAGTGGGCACTGCTAAGGCGC
CATAAGAGTGAAGATCTGTTTGGAGTACAAATCGCTGGATCCAACGTAGA
AGTGGTCACGCGTGCAGCTGAGCTGATTGCAGACAAGTGTGAAATCGATT
TTGTCGAACTGAATGCGGGGTGCCCGATTGAAATCGTCTTTAACAGGGGA
GGTGGCTGTAGTCTGATGCAGAGACGGAACAAGTTTAAGAGAATGGTGTG
GAGCATCAACGGAGTCGTGGATATTCCAGTTGGGGTGAAGGTGCGTATGG
GCGTCTCTTTACGCTCTCGAAATGCGCACGAGTTGATTCCGGATTTGGCT
GCTGTGGGGGCAAGTTGGGTAACTGTTCACGGTCGAACTCGAAAACAACG
GTATTCTAAGCTTGCTGACTGGACTTACATCGAAAACGAATGTGCCCCTG
CTGCTCGGCGCTCTGGTATTCCGCTTTTAGGAAACGGCGATGTGTACAAT
TGGCGAGATGCAACTCCCTATTTCGAGGGCGGCAAACATGAAGGATGTGG
TGTGGATACTGTTATGATCGCCCGTGGTGCACTGATTAAACCATGGCTGT
TTACAGAGATTAAGGAAAGACGTGACTGGGACATACGCAGCTCGGAAAGG
CTTGAACTTTACAAAGAATTCACGCGCTATGGCCTGGATCACTGGGGTGC
TGACGAGCGAGGGGTAGAGAAGACCCGCCGATTCCTGCTGGAGTGGCTGT
CTTTCTTATACCGTTATGTACCTATAGGTATCGTTGAAGGCGGTGCAGAT
ACAGTACTCACTATGTCCCATAGAGCGCCATTTTTTCGTGGCCGTGATGA
ACTTGAAACGTTACTAGGTTCTCCGAAAAGCCAGGATTGGGTAAGAATCA
CAGAGATGCTGCTCGGAAAGACTCCAGAACAATTCCAATTTGCGCCCCGA
CACAAGAGCAATGCTTGGGAAACCACGAAGTCATGA
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