Gchil839.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil839.t1
Unique Name	Gchil839.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:357727..359277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1458462.JNLK01000001_gene1975
PFAMs	Sel1
Max annot lvl	186801\|Clostridia
Evalue	0.000588
EggNOG OGs	COG0790@1\|root,COG0790@2\|Bacteria,1UWEA@1239\|Firmicutes,24PEB@186801\|Clostridia,27PKB@186928\|unclassified Lachnospiraceae
Description	Sel1-like repeats.
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil839	Gchil839	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 357727..359277 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil839.t1.start1	Gchil839.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 357727..357729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil839.t1.CDS1	Gchil839.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 357727..359277 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil839.t1.exon1	Gchil839.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 357727..359277 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil839.t1.stop1	Gchil839.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 359275..359277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil839.t1	Gchil839.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 357727..359277 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:357727..359277+
coding sequence from alignment at tig00000017_pilon:357727..359277+

mRNA sequence

>Gchil839.t1 ID=Gchil839.t1|Name=Gchil839.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=517bp
MPSKRSYQPVRQSRPDRAKTKSETVLDQISPPKHGLPYATLPPRFSIPSP
SHPLFPTSFAKLLRTLPIRFTLNFVCDYPALGLDSILRMNLSEPMMIKFA
RQLEYGPVGRRGFRIASRYVALGILHHVILRSPDNIEAQCLKGELLLSFL
HYGRNGLFIPRTGLEEALNCFETASDEPLGLFLKGRLMLTMEAIHKDTSK
AALGKQLVLKAADDGCARALVFLAHRYEYPQLDRAVSFSSDVPKDRDSRE
RFIVGLYEKAAAADDPDALNDLGTSYAQEYGGLDADFDSVVKYYLRAIMA
GSLHAFDNLGTHYETGMGMRFPDKVDYDLALFYYRQGARKGCPKCAYNMG
AAYEEGMGDTLPRDIGRAEKYYSTALKLSSDCGDLQTMARTVRDLCALYA
TKIKLGNPNDEETLRCDKKLRNIIPSDAGADELMNKVNRGMSQIIRKRST
SVLTKLVGEENARLLAKRVRSVWKNNDNMPEEERDAIIQHLTGGEPVDQR
TPPRKKRATGKRKAKS*

spliced messenger RNA

>Gchil839.t1 ID=Gchil839.t1|Name=Gchil839.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000017_pilon:357727..359277+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCAAGCGAAGCTACCAACCTGTCCGCCAAAGTCGCCCAGATAG
AGCCAAAACCAAGTCGGAAACCGTGCTTGACCAAATCTCCCCACCAAAGC
ATGGCTTGCCTTACGCAACGCTTCCGCCTCGCTTTTCGATTCCCTCTCCC
TCGCACCCGCTTTTTCCAACGTCCTTCGCTAAGCTGCTGCGCACCTTACC
CATCCGTTTCACCCTCAACTTTGTGTGTGACTATCCAGCGCTTGGACTCG
ACTCAATTCTTCGCATGAATCTCAGCGAACCAATGATGATCAAGTTTGCT
CGTCAGCTGGAGTATGGGCCCGTTGGTCGGAGGGGGTTTCGTATCGCCTC
GCGCTACGTTGCGCTTGGCATTTTGCATCACGTCATTCTGCGATCTCCAG
ACAACATCGAAGCTCAATGTTTGAAGGGGGAACTACTGCTCTCTTTTTTA
CATTATGGTCGAAACGGTCTTTTTATCCCGCGAACGGGACTAGAGGAGGC
GTTGAATTGCTTCGAGACCGCTTCGGATGAACCCCTCGGTCTATTTCTTA
AGGGTCGTCTCATGCTCACCATGGAAGCAATACACAAAGATACTTCAAAA
GCAGCACTTGGCAAACAATTAGTGCTCAAAGCTGCCGATGACGGTTGCGC
GCGCGCCTTGGTTTTTCTTGCCCACCGATATGAATACCCACAACTGGACC
GCGCTGTGAGCTTTTCCTCCGATGTTCCAAAGGATCGCGATTCCCGCGAA
CGCTTCATTGTGGGTCTTTACGAAAAAGCTGCGGCAGCCGATGACCCTGA
TGCTCTCAACGACCTGGGCACATCCTATGCACAAGAATACGGTGGCCTAG
ACGCTGATTTTGATTCAGTTGTCAAGTACTATTTGCGTGCGATCATGGCG
GGTTCTCTTCACGCGTTCGACAACCTTGGCACGCACTATGAAACAGGCAT
GGGTATGCGCTTCCCGGATAAAGTGGATTACGACTTGGCCTTGTTTTACT
ACAGGCAAGGCGCCAGAAAAGGCTGCCCCAAGTGTGCCTACAACATGGGC
GCTGCGTATGAAGAAGGAATGGGCGATACATTGCCGAGGGACATCGGTCG
AGCTGAGAAGTATTATTCGACTGCTCTGAAATTGAGTAGTGATTGTGGTG
ATCTGCAAACCATGGCTCGAACTGTCCGCGACTTGTGCGCTCTGTACGCG
ACAAAGATAAAGCTTGGGAACCCAAATGATGAAGAAACCCTGAGGTGTGA
CAAGAAACTTCGAAATATAATCCCTAGTGATGCTGGAGCTGATGAGCTCA
TGAATAAAGTCAACCGAGGAATGTCTCAGATCATACGGAAGAGATCTACC
AGTGTTCTCACAAAGTTGGTTGGGGAGGAAAATGCTCGTCTTCTCGCCAA
GAGAGTGAGGTCAGTCTGGAAGAACAACGACAATATGCCAGAGGAAGAAA
GAGACGCTATTATCCAGCATTTGACTGGAGGAGAACCTGTTGACCAGAGA
ACACCTCCTCGGAAAAAGCGCGCTACTGGGAAGCGAAAAGCTAAAAGTTG
A

protein sequence of Gchil839.t1

>Gchil839.t1 ID=Gchil839.t1|Name=Gchil839.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=517bp
MPSKRSYQPVRQSRPDRAKTKSETVLDQISPPKHGLPYATLPPRFSIPSP
SHPLFPTSFAKLLRTLPIRFTLNFVCDYPALGLDSILRMNLSEPMMIKFA
RQLEYGPVGRRGFRIASRYVALGILHHVILRSPDNIEAQCLKGELLLSFL
HYGRNGLFIPRTGLEEALNCFETASDEPLGLFLKGRLMLTMEAIHKDTSK
AALGKQLVLKAADDGCARALVFLAHRYEYPQLDRAVSFSSDVPKDRDSRE
RFIVGLYEKAAAADDPDALNDLGTSYAQEYGGLDADFDSVVKYYLRAIMA
GSLHAFDNLGTHYETGMGMRFPDKVDYDLALFYYRQGARKGCPKCAYNMG
AAYEEGMGDTLPRDIGRAEKYYSTALKLSSDCGDLQTMARTVRDLCALYA
TKIKLGNPNDEETLRCDKKLRNIIPSDAGADELMNKVNRGMSQIIRKRST
SVLTKLVGEENARLLAKRVRSVWKNNDNMPEEERDAIIQHLTGGEPVDQR
TPPRKKRATGKRKAKS*

mRNA from alignment at tig00000017_pilon:357727..359277+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil839.t1 ID=Gchil839.t1|Name=Gchil839.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000017_pilon:357727..359277+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCAAGCGAAGCTACCAACCTGTCCGCCAAAGTCGCCCAGATAG
AGCCAAAACCAAGTCGGAAACCGTGCTTGACCAAATCTCCCCACCAAAGC
ATGGCTTGCCTTACGCAACGCTTCCGCCTCGCTTTTCGATTCCCTCTCCC
TCGCACCCGCTTTTTCCAACGTCCTTCGCTAAGCTGCTGCGCACCTTACC
CATCCGTTTCACCCTCAACTTTGTGTGTGACTATCCAGCGCTTGGACTCG
ACTCAATTCTTCGCATGAATCTCAGCGAACCAATGATGATCAAGTTTGCT
CGTCAGCTGGAGTATGGGCCCGTTGGTCGGAGGGGGTTTCGTATCGCCTC
GCGCTACGTTGCGCTTGGCATTTTGCATCACGTCATTCTGCGATCTCCAG
ACAACATCGAAGCTCAATGTTTGAAGGGGGAACTACTGCTCTCTTTTTTA
CATTATGGTCGAAACGGTCTTTTTATCCCGCGAACGGGACTAGAGGAGGC
GTTGAATTGCTTCGAGACCGCTTCGGATGAACCCCTCGGTCTATTTCTTA
AGGGTCGTCTCATGCTCACCATGGAAGCAATACACAAAGATACTTCAAAA
GCAGCACTTGGCAAACAATTAGTGCTCAAAGCTGCCGATGACGGTTGCGC
GCGCGCCTTGGTTTTTCTTGCCCACCGATATGAATACCCACAACTGGACC
GCGCTGTGAGCTTTTCCTCCGATGTTCCAAAGGATCGCGATTCCCGCGAA
CGCTTCATTGTGGGTCTTTACGAAAAAGCTGCGGCAGCCGATGACCCTGA
TGCTCTCAACGACCTGGGCACATCCTATGCACAAGAATACGGTGGCCTAG
ACGCTGATTTTGATTCAGTTGTCAAGTACTATTTGCGTGCGATCATGGCG
GGTTCTCTTCACGCGTTCGACAACCTTGGCACGCACTATGAAACAGGCAT
GGGTATGCGCTTCCCGGATAAAGTGGATTACGACTTGGCCTTGTTTTACT
ACAGGCAAGGCGCCAGAAAAGGCTGCCCCAAGTGTGCCTACAACATGGGC
GCTGCGTATGAAGAAGGAATGGGCGATACATTGCCGAGGGACATCGGTCG
AGCTGAGAAGTATTATTCGACTGCTCTGAAATTGAGTAGTGATTGTGGTG
ATCTGCAAACCATGGCTCGAACTGTCCGCGACTTGTGCGCTCTGTACGCG
ACAAAGATAAAGCTTGGGAACCCAAATGATGAAGAAACCCTGAGGTGTGA
CAAGAAACTTCGAAATATAATCCCTAGTGATGCTGGAGCTGATGAGCTCA
TGAATAAAGTCAACCGAGGAATGTCTCAGATCATACGGAAGAGATCTACC
AGTGTTCTCACAAAGTTGGTTGGGGAGGAAAATGCTCGTCTTCTCGCCAA
GAGAGTGAGGTCAGTCTGGAAGAACAACGACAATATGCCAGAGGAAGAAA
GAGACGCTATTATCCAGCATTTGACTGGAGGAGAACCTGTTGACCAGAGA
ACACCTCCTCGGAAAAAGCGCGCTACTGGGAAGCGAAAAGCTAAAAGTTG
A

Coding sequence (CDS) from alignment at tig00000017_pilon:357727..359277+

>Gchil839.t1 ID=Gchil839.t1|Name=Gchil839.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000017_pilon:357727..359277+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCAAGCGAAGCTACCAACCTGTCCGCCAAAGTCGCCCAGATAG
AGCCAAAACCAAGTCGGAAACCGTGCTTGACCAAATCTCCCCACCAAAGC
ATGGCTTGCCTTACGCAACGCTTCCGCCTCGCTTTTCGATTCCCTCTCCC
TCGCACCCGCTTTTTCCAACGTCCTTCGCTAAGCTGCTGCGCACCTTACC
CATCCGTTTCACCCTCAACTTTGTGTGTGACTATCCAGCGCTTGGACTCG
ACTCAATTCTTCGCATGAATCTCAGCGAACCAATGATGATCAAGTTTGCT
CGTCAGCTGGAGTATGGGCCCGTTGGTCGGAGGGGGTTTCGTATCGCCTC
GCGCTACGTTGCGCTTGGCATTTTGCATCACGTCATTCTGCGATCTCCAG
ACAACATCGAAGCTCAATGTTTGAAGGGGGAACTACTGCTCTCTTTTTTA
CATTATGGTCGAAACGGTCTTTTTATCCCGCGAACGGGACTAGAGGAGGC
GTTGAATTGCTTCGAGACCGCTTCGGATGAACCCCTCGGTCTATTTCTTA
AGGGTCGTCTCATGCTCACCATGGAAGCAATACACAAAGATACTTCAAAA
GCAGCACTTGGCAAACAATTAGTGCTCAAAGCTGCCGATGACGGTTGCGC
GCGCGCCTTGGTTTTTCTTGCCCACCGATATGAATACCCACAACTGGACC
GCGCTGTGAGCTTTTCCTCCGATGTTCCAAAGGATCGCGATTCCCGCGAA
CGCTTCATTGTGGGTCTTTACGAAAAAGCTGCGGCAGCCGATGACCCTGA
TGCTCTCAACGACCTGGGCACATCCTATGCACAAGAATACGGTGGCCTAG
ACGCTGATTTTGATTCAGTTGTCAAGTACTATTTGCGTGCGATCATGGCG
GGTTCTCTTCACGCGTTCGACAACCTTGGCACGCACTATGAAACAGGCAT
GGGTATGCGCTTCCCGGATAAAGTGGATTACGACTTGGCCTTGTTTTACT
ACAGGCAAGGCGCCAGAAAAGGCTGCCCCAAGTGTGCCTACAACATGGGC
GCTGCGTATGAAGAAGGAATGGGCGATACATTGCCGAGGGACATCGGTCG
AGCTGAGAAGTATTATTCGACTGCTCTGAAATTGAGTAGTGATTGTGGTG
ATCTGCAAACCATGGCTCGAACTGTCCGCGACTTGTGCGCTCTGTACGCG
ACAAAGATAAAGCTTGGGAACCCAAATGATGAAGAAACCCTGAGGTGTGA
CAAGAAACTTCGAAATATAATCCCTAGTGATGCTGGAGCTGATGAGCTCA
TGAATAAAGTCAACCGAGGAATGTCTCAGATCATACGGAAGAGATCTACC
AGTGTTCTCACAAAGTTGGTTGGGGAGGAAAATGCTCGTCTTCTCGCCAA
GAGAGTGAGGTCAGTCTGGAAGAACAACGACAATATGCCAGAGGAAGAAA
GAGACGCTATTATCCAGCATTTGACTGGAGGAGAACCTGTTGACCAGAGA
ACACCTCCTCGGAAAAAGCGCGCTACTGGGAAGCGAAAAGCTAAAAGTTG
A