Gchil3753.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3753.t1
Unique Name	Gchil3753.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:1211145..1212545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3753	Gchil3753	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 1211145..1212545 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3753.t1.start1	Gchil3753.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 1211145..1211147 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3753.t1.CDS1	Gchil3753.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 1211145..1212545 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3753.t1.exon1	Gchil3753.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 1211145..1212545 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3753.t1.stop1	Gchil3753.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 1212543..1212545 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3753.t1	Gchil3753.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 1211145..1212545 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:1211145..1212545+
coding sequence from alignment at tig00025222_pilon:1211145..1212545+

mRNA sequence

>Gchil3753.t1 ID=Gchil3753.t1|Name=Gchil3753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MTLLPAVLGAIFFLFTVSAQLSVPTRPEGPTIFPDRPEAPSFGAPIGLQN
SPGTPLITSRRETLSERVQRLRGEIPEAAPDEEPNIEELYNPMRDAKCFN
ADYDTSVPTSKISSLFSDYVNIFEWGFNMPRSSPIFSFSENGVTNNRFPG
MCLRMAFHDNSINPALGEYAPYVSSFIDGNDNWTGPNRFLRTSGGDASVL
TCRIERLHPNQNYDQTASRILFAFQTRDVPGLGGQSLMEKYQMSYADALH
NCALAAVSWLNPGEGGSSKNQIRFGRKDACFFSDDAILATDALSLDGNNP
LCGPTELLPPVTFSARQSNRWFTSRGLPERQWLSYMGTHTTFDNFGRTET
LRQMPVPGDDYFTNYVGVPVHVPDVEEAANDPENPGCDWTVNGLERFWPM
SQADCALGIDVISENLDLQELETVMDRYISVPASWIRNDLVCAMTLLGSR
SNEGCDGVNPLFGSVY*

spliced messenger RNA

>Gchil3753.t1 ID=Gchil3753.t1|Name=Gchil3753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00025222_pilon:1211145..1212545+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTATTACCTGCAGTTTTGGGTGCCATATTCTTTCTGTTCACAGT
CAGTGCACAGCTTTCGGTACCTACACGGCCTGAAGGACCTACCATTTTCC
CGGATAGGCCAGAAGCACCTTCATTTGGCGCCCCTATAGGCTTGCAGAAT
TCTCCTGGAACCCCCCTCATAACCTCGAGAAGAGAAACCCTCAGTGAACG
TGTGCAGCGACTCAGGGGTGAAATCCCAGAGGCCGCGCCCGATGAGGAAC
CGAACATCGAAGAACTCTATAACCCAATGCGAGATGCAAAGTGCTTCAAT
GCCGATTACGACACTTCCGTGCCCACGTCGAAGATTTCATCTCTGTTCTC
TGACTACGTCAACATCTTCGAATGGGGTTTCAACATGCCTCGGAGTTCCC
CTATATTCTCGTTTTCTGAAAATGGCGTCACCAACAACAGATTTCCTGGC
ATGTGCCTCAGGATGGCCTTCCACGACAACTCCATAAATCCTGCACTCGG
TGAGTATGCACCGTATGTTTCTAGTTTCATCGATGGAAACGACAATTGGA
CAGGTCCGAACAGGTTCCTAAGAACTTCTGGTGGCGACGCATCCGTCTTG
ACCTGTCGTATCGAGCGACTTCATCCTAATCAGAACTACGACCAAACAGC
ATCCCGAATCCTGTTTGCTTTCCAGACACGTGACGTTCCCGGACTCGGAG
GGCAGTCTCTCATGGAAAAATACCAGATGTCATACGCAGACGCACTCCAC
AACTGCGCGCTTGCAGCTGTTTCTTGGTTGAATCCAGGAGAAGGAGGCAG
CAGCAAGAATCAAATCCGTTTTGGAAGAAAAGACGCTTGCTTTTTTTCCG
ATGATGCCATTCTGGCAACAGATGCCTTAAGTTTGGATGGAAACAATCCC
CTGTGTGGGCCGACTGAGCTCTTACCTCCTGTTACATTCAGTGCAAGGCA
ATCTAACAGGTGGTTTACATCTCGCGGACTACCTGAACGTCAGTGGTTGT
CTTACATGGGCACTCATACCACTTTTGATAATTTTGGTAGGACTGAAACC
TTGCGCCAGATGCCAGTGCCTGGCGATGACTACTTCACGAACTACGTGGG
TGTCCCAGTACATGTACCGGACGTCGAAGAGGCTGCAAATGATCCTGAGA
ATCCCGGATGCGATTGGACCGTAAATGGACTTGAACGATTTTGGCCAATG
TCACAGGCTGATTGCGCACTTGGGATTGATGTCATTTCCGAAAATTTGGA
CCTACAGGAATTGGAAACCGTGATGGATAGATACATCAGTGTTCCAGCCT
CCTGGATTCGGAACGACTTGGTATGTGCTATGACTTTGCTGGGTAGTCGT
TCCAACGAAGGATGTGACGGCGTAAACCCATTATTCGGGTCCGTTTATTA
A

protein sequence of Gchil3753.t1

>Gchil3753.t1 ID=Gchil3753.t1|Name=Gchil3753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MTLLPAVLGAIFFLFTVSAQLSVPTRPEGPTIFPDRPEAPSFGAPIGLQN
SPGTPLITSRRETLSERVQRLRGEIPEAAPDEEPNIEELYNPMRDAKCFN
ADYDTSVPTSKISSLFSDYVNIFEWGFNMPRSSPIFSFSENGVTNNRFPG
MCLRMAFHDNSINPALGEYAPYVSSFIDGNDNWTGPNRFLRTSGGDASVL
TCRIERLHPNQNYDQTASRILFAFQTRDVPGLGGQSLMEKYQMSYADALH
NCALAAVSWLNPGEGGSSKNQIRFGRKDACFFSDDAILATDALSLDGNNP
LCGPTELLPPVTFSARQSNRWFTSRGLPERQWLSYMGTHTTFDNFGRTET
LRQMPVPGDDYFTNYVGVPVHVPDVEEAANDPENPGCDWTVNGLERFWPM
SQADCALGIDVISENLDLQELETVMDRYISVPASWIRNDLVCAMTLLGSR
SNEGCDGVNPLFGSVY*

mRNA from alignment at tig00025222_pilon:1211145..1212545+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3753.t1 ID=Gchil3753.t1|Name=Gchil3753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00025222_pilon:1211145..1212545+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTATTACCTGCAGTTTTGGGTGCCATATTCTTTCTGTTCACAGT
CAGTGCACAGCTTTCGGTACCTACACGGCCTGAAGGACCTACCATTTTCC
CGGATAGGCCAGAAGCACCTTCATTTGGCGCCCCTATAGGCTTGCAGAAT
TCTCCTGGAACCCCCCTCATAACCTCGAGAAGAGAAACCCTCAGTGAACG
TGTGCAGCGACTCAGGGGTGAAATCCCAGAGGCCGCGCCCGATGAGGAAC
CGAACATCGAAGAACTCTATAACCCAATGCGAGATGCAAAGTGCTTCAAT
GCCGATTACGACACTTCCGTGCCCACGTCGAAGATTTCATCTCTGTTCTC
TGACTACGTCAACATCTTCGAATGGGGTTTCAACATGCCTCGGAGTTCCC
CTATATTCTCGTTTTCTGAAAATGGCGTCACCAACAACAGATTTCCTGGC
ATGTGCCTCAGGATGGCCTTCCACGACAACTCCATAAATCCTGCACTCGG
TGAGTATGCACCGTATGTTTCTAGTTTCATCGATGGAAACGACAATTGGA
CAGGTCCGAACAGGTTCCTAAGAACTTCTGGTGGCGACGCATCCGTCTTG
ACCTGTCGTATCGAGCGACTTCATCCTAATCAGAACTACGACCAAACAGC
ATCCCGAATCCTGTTTGCTTTCCAGACACGTGACGTTCCCGGACTCGGAG
GGCAGTCTCTCATGGAAAAATACCAGATGTCATACGCAGACGCACTCCAC
AACTGCGCGCTTGCAGCTGTTTCTTGGTTGAATCCAGGAGAAGGAGGCAG
CAGCAAGAATCAAATCCGTTTTGGAAGAAAAGACGCTTGCTTTTTTTCCG
ATGATGCCATTCTGGCAACAGATGCCTTAAGTTTGGATGGAAACAATCCC
CTGTGTGGGCCGACTGAGCTCTTACCTCCTGTTACATTCAGTGCAAGGCA
ATCTAACAGGTGGTTTACATCTCGCGGACTACCTGAACGTCAGTGGTTGT
CTTACATGGGCACTCATACCACTTTTGATAATTTTGGTAGGACTGAAACC
TTGCGCCAGATGCCAGTGCCTGGCGATGACTACTTCACGAACTACGTGGG
TGTCCCAGTACATGTACCGGACGTCGAAGAGGCTGCAAATGATCCTGAGA
ATCCCGGATGCGATTGGACCGTAAATGGACTTGAACGATTTTGGCCAATG
TCACAGGCTGATTGCGCACTTGGGATTGATGTCATTTCCGAAAATTTGGA
CCTACAGGAATTGGAAACCGTGATGGATAGATACATCAGTGTTCCAGCCT
CCTGGATTCGGAACGACTTGGTATGTGCTATGACTTTGCTGGGTAGTCGT
TCCAACGAAGGATGTGACGGCGTAAACCCATTATTCGGGTCCGTTTATTA
A

Coding sequence (CDS) from alignment at tig00025222_pilon:1211145..1212545+

>Gchil3753.t1 ID=Gchil3753.t1|Name=Gchil3753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00025222_pilon:1211145..1212545+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTATTACCTGCAGTTTTGGGTGCCATATTCTTTCTGTTCACAGT
CAGTGCACAGCTTTCGGTACCTACACGGCCTGAAGGACCTACCATTTTCC
CGGATAGGCCAGAAGCACCTTCATTTGGCGCCCCTATAGGCTTGCAGAAT
TCTCCTGGAACCCCCCTCATAACCTCGAGAAGAGAAACCCTCAGTGAACG
TGTGCAGCGACTCAGGGGTGAAATCCCAGAGGCCGCGCCCGATGAGGAAC
CGAACATCGAAGAACTCTATAACCCAATGCGAGATGCAAAGTGCTTCAAT
GCCGATTACGACACTTCCGTGCCCACGTCGAAGATTTCATCTCTGTTCTC
TGACTACGTCAACATCTTCGAATGGGGTTTCAACATGCCTCGGAGTTCCC
CTATATTCTCGTTTTCTGAAAATGGCGTCACCAACAACAGATTTCCTGGC
ATGTGCCTCAGGATGGCCTTCCACGACAACTCCATAAATCCTGCACTCGG
TGAGTATGCACCGTATGTTTCTAGTTTCATCGATGGAAACGACAATTGGA
CAGGTCCGAACAGGTTCCTAAGAACTTCTGGTGGCGACGCATCCGTCTTG
ACCTGTCGTATCGAGCGACTTCATCCTAATCAGAACTACGACCAAACAGC
ATCCCGAATCCTGTTTGCTTTCCAGACACGTGACGTTCCCGGACTCGGAG
GGCAGTCTCTCATGGAAAAATACCAGATGTCATACGCAGACGCACTCCAC
AACTGCGCGCTTGCAGCTGTTTCTTGGTTGAATCCAGGAGAAGGAGGCAG
CAGCAAGAATCAAATCCGTTTTGGAAGAAAAGACGCTTGCTTTTTTTCCG
ATGATGCCATTCTGGCAACAGATGCCTTAAGTTTGGATGGAAACAATCCC
CTGTGTGGGCCGACTGAGCTCTTACCTCCTGTTACATTCAGTGCAAGGCA
ATCTAACAGGTGGTTTACATCTCGCGGACTACCTGAACGTCAGTGGTTGT
CTTACATGGGCACTCATACCACTTTTGATAATTTTGGTAGGACTGAAACC
TTGCGCCAGATGCCAGTGCCTGGCGATGACTACTTCACGAACTACGTGGG
TGTCCCAGTACATGTACCGGACGTCGAAGAGGCTGCAAATGATCCTGAGA
ATCCCGGATGCGATTGGACCGTAAATGGACTTGAACGATTTTGGCCAATG
TCACAGGCTGATTGCGCACTTGGGATTGATGTCATTTCCGAAAATTTGGA
CCTACAGGAATTGGAAACCGTGATGGATAGATACATCAGTGTTCCAGCCT
CCTGGATTCGGAACGACTTGGTATGTGCTATGACTTTGCTGGGTAGTCGT
TCCAACGAAGGATGTGACGGCGTAAACCCATTATTCGGGTCCGTTTATTA
A