Gchil3709.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3709.t1
Unique NameGchil3709.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:821034..822557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue1.03e-10
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3709Gchil3709Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 821034..822557 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3709.t1.stop1Gchil3709.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 821034..821036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3709.t1.CDS1Gchil3709.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 821034..822557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3709.t1.exon1Gchil3709.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 821034..822557 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3709.t1.start1Gchil3709.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 822555..822557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3709.t1Gchil3709.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 821034..822557 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3709.t1 ID=Gchil3709.t1|Name=Gchil3709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MAYQTSPPASPIPYAEERRHRYMVMLPSHDGTQTLVECLPHGSIRLPLIP
TCPHFLATVRVRDVEKSIESILGVRVRFVRQLWTTNGEGNYVLWGETYTL
IAVILVEWGEADKSIESGGTMKWMSRSEVRNANWMIAEEELGLDLKEVAL
KAIKQINGETHVWIPPWRCIGWFSKVLRWIKAVTKCDLGDQELYRRFEKC
VDHHHSVVWACELDLSKTEVLWTVSVPKVERIYVKASQPLLQEAQRTATI
ARVLSELEVVPDIIAVDENDGVLIQRDAWSFEGLESDVDGQLLVNTIVRM
QKTSLDHMEELQAGGLQVRDCEWLLANVSRLFGHKGLDKAVQGSKEYEDI
LLDLRCREEEVMEICKKISSFKVPNTLVHGDLTSANCGRRVSMGGNGYQF
FDWSFSHIGHPFSDVDVCRDFFMESKTACDHWSLEYWRQWKSVVNKEQFW
NLLDLVPLLVDCVPLDLFLTESEFQVEEWYGLSRRLREHLTFIQNDLDSV
KQSTNPG*
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spliced messenger RNA

>Gchil3709.t1 ID=Gchil3709.t1|Name=Gchil3709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:821034..822557- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTACCAAACCTCACCACCAGCGTCTCCAATACCTTATGCTGAGGA
AAGACGACACCGATACATGGTCATGCTTCCATCGCATGATGGCACGCAAA
CGCTCGTCGAATGCTTACCACATGGATCCATCCGTCTGCCACTGATACCA
ACATGCCCGCACTTTCTCGCCACTGTGAGGGTACGGGACGTAGAAAAATC
GATTGAATCCATCTTGGGCGTACGCGTGAGATTTGTGCGACAGTTATGGA
CAACCAATGGAGAAGGAAACTATGTGTTGTGGGGAGAAACTTATACTCTA
ATCGCAGTTATCCTAGTAGAGTGGGGAGAAGCGGATAAAAGCATTGAAAG
CGGCGGGACAATGAAATGGATGTCTAGAAGTGAGGTGCGCAATGCCAATT
GGATGATAGCGGAGGAAGAGCTTGGACTGGATTTGAAAGAGGTGGCATTG
AAAGCGATCAAGCAGATCAACGGAGAAACACATGTGTGGATACCACCGTG
GCGTTGCATAGGGTGGTTTTCTAAGGTTTTGCGGTGGATAAAGGCGGTGA
CGAAATGTGACCTTGGCGATCAGGAGCTGTACCGCAGGTTTGAAAAGTGT
GTAGACCATCATCATTCTGTGGTGTGGGCCTGTGAGCTGGATTTATCGAA
AACAGAAGTTCTATGGACTGTTTCAGTACCCAAGGTCGAAAGGATTTATG
TAAAGGCGTCGCAACCGTTACTGCAAGAAGCGCAACGAACGGCGACGATT
GCAAGGGTGCTCAGCGAGCTGGAAGTAGTTCCAGACATTATCGCGGTGGA
CGAAAATGATGGTGTCCTAATACAGCGAGATGCTTGGAGCTTCGAAGGTC
TGGAAAGTGATGTTGATGGACAGTTGTTGGTGAACACCATTGTAAGAATG
CAGAAGACATCTCTTGACCATATGGAAGAACTGCAGGCTGGGGGGCTTCA
GGTACGAGATTGTGAGTGGCTTTTAGCCAACGTTTCTCGCCTTTTTGGTC
ACAAAGGACTAGATAAAGCTGTGCAGGGCAGCAAAGAATATGAAGATATT
CTCCTAGACCTTCGATGTCGCGAGGAGGAGGTGATGGAGATATGTAAGAA
GATCTCCAGTTTTAAAGTTCCAAATACTTTAGTTCATGGAGATCTGACTT
CAGCAAACTGCGGTAGAAGGGTTTCTATGGGAGGCAACGGTTATCAGTTT
TTCGACTGGAGCTTTTCGCACATAGGACATCCATTCTCAGATGTTGATGT
TTGTCGAGACTTTTTCATGGAAAGCAAAACTGCCTGTGATCATTGGTCTC
TAGAGTACTGGAGGCAATGGAAGTCTGTGGTGAACAAAGAACAATTTTGG
AACCTGTTGGATCTGGTTCCGCTTCTGGTTGACTGTGTTCCTTTAGATTT
GTTTCTGACGGAATCTGAGTTTCAAGTTGAGGAATGGTATGGCTTGAGTC
GGCGACTGAGGGAGCATTTGACATTCATTCAAAACGACTTGGATTCGGTC
AAGCAGTCAACCAACCCCGGGTAA
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protein sequence of Gchil3709.t1

>Gchil3709.t1 ID=Gchil3709.t1|Name=Gchil3709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MAYQTSPPASPIPYAEERRHRYMVMLPSHDGTQTLVECLPHGSIRLPLIP
TCPHFLATVRVRDVEKSIESILGVRVRFVRQLWTTNGEGNYVLWGETYTL
IAVILVEWGEADKSIESGGTMKWMSRSEVRNANWMIAEEELGLDLKEVAL
KAIKQINGETHVWIPPWRCIGWFSKVLRWIKAVTKCDLGDQELYRRFEKC
VDHHHSVVWACELDLSKTEVLWTVSVPKVERIYVKASQPLLQEAQRTATI
ARVLSELEVVPDIIAVDENDGVLIQRDAWSFEGLESDVDGQLLVNTIVRM
QKTSLDHMEELQAGGLQVRDCEWLLANVSRLFGHKGLDKAVQGSKEYEDI
LLDLRCREEEVMEICKKISSFKVPNTLVHGDLTSANCGRRVSMGGNGYQF
FDWSFSHIGHPFSDVDVCRDFFMESKTACDHWSLEYWRQWKSVVNKEQFW
NLLDLVPLLVDCVPLDLFLTESEFQVEEWYGLSRRLREHLTFIQNDLDSV
KQSTNPG*
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mRNA from alignment at tig00025222_pilon:821034..822557-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3709.t1 ID=Gchil3709.t1|Name=Gchil3709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:821034..822557- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTACCAAACCTCACCACCAGCGTCTCCAATACCTTATGCTGAGGA
AAGACGACACCGATACATGGTCATGCTTCCATCGCATGATGGCACGCAAA
CGCTCGTCGAATGCTTACCACATGGATCCATCCGTCTGCCACTGATACCA
ACATGCCCGCACTTTCTCGCCACTGTGAGGGTACGGGACGTAGAAAAATC
GATTGAATCCATCTTGGGCGTACGCGTGAGATTTGTGCGACAGTTATGGA
CAACCAATGGAGAAGGAAACTATGTGTTGTGGGGAGAAACTTATACTCTA
ATCGCAGTTATCCTAGTAGAGTGGGGAGAAGCGGATAAAAGCATTGAAAG
CGGCGGGACAATGAAATGGATGTCTAGAAGTGAGGTGCGCAATGCCAATT
GGATGATAGCGGAGGAAGAGCTTGGACTGGATTTGAAAGAGGTGGCATTG
AAAGCGATCAAGCAGATCAACGGAGAAACACATGTGTGGATACCACCGTG
GCGTTGCATAGGGTGGTTTTCTAAGGTTTTGCGGTGGATAAAGGCGGTGA
CGAAATGTGACCTTGGCGATCAGGAGCTGTACCGCAGGTTTGAAAAGTGT
GTAGACCATCATCATTCTGTGGTGTGGGCCTGTGAGCTGGATTTATCGAA
AACAGAAGTTCTATGGACTGTTTCAGTACCCAAGGTCGAAAGGATTTATG
TAAAGGCGTCGCAACCGTTACTGCAAGAAGCGCAACGAACGGCGACGATT
GCAAGGGTGCTCAGCGAGCTGGAAGTAGTTCCAGACATTATCGCGGTGGA
CGAAAATGATGGTGTCCTAATACAGCGAGATGCTTGGAGCTTCGAAGGTC
TGGAAAGTGATGTTGATGGACAGTTGTTGGTGAACACCATTGTAAGAATG
CAGAAGACATCTCTTGACCATATGGAAGAACTGCAGGCTGGGGGGCTTCA
GGTACGAGATTGTGAGTGGCTTTTAGCCAACGTTTCTCGCCTTTTTGGTC
ACAAAGGACTAGATAAAGCTGTGCAGGGCAGCAAAGAATATGAAGATATT
CTCCTAGACCTTCGATGTCGCGAGGAGGAGGTGATGGAGATATGTAAGAA
GATCTCCAGTTTTAAAGTTCCAAATACTTTAGTTCATGGAGATCTGACTT
CAGCAAACTGCGGTAGAAGGGTTTCTATGGGAGGCAACGGTTATCAGTTT
TTCGACTGGAGCTTTTCGCACATAGGACATCCATTCTCAGATGTTGATGT
TTGTCGAGACTTTTTCATGGAAAGCAAAACTGCCTGTGATCATTGGTCTC
TAGAGTACTGGAGGCAATGGAAGTCTGTGGTGAACAAAGAACAATTTTGG
AACCTGTTGGATCTGGTTCCGCTTCTGGTTGACTGTGTTCCTTTAGATTT
GTTTCTGACGGAATCTGAGTTTCAAGTTGAGGAATGGTATGGCTTGAGTC
GGCGACTGAGGGAGCATTTGACATTCATTCAAAACGACTTGGATTCGGTC
AAGCAGTCAACCAACCCCGGGTAA
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Coding sequence (CDS) from alignment at tig00025222_pilon:821034..822557-

>Gchil3709.t1 ID=Gchil3709.t1|Name=Gchil3709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00025222_pilon:821034..822557- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTACCAAACCTCACCACCAGCGTCTCCAATACCTTATGCTGAGGA
AAGACGACACCGATACATGGTCATGCTTCCATCGCATGATGGCACGCAAA
CGCTCGTCGAATGCTTACCACATGGATCCATCCGTCTGCCACTGATACCA
ACATGCCCGCACTTTCTCGCCACTGTGAGGGTACGGGACGTAGAAAAATC
GATTGAATCCATCTTGGGCGTACGCGTGAGATTTGTGCGACAGTTATGGA
CAACCAATGGAGAAGGAAACTATGTGTTGTGGGGAGAAACTTATACTCTA
ATCGCAGTTATCCTAGTAGAGTGGGGAGAAGCGGATAAAAGCATTGAAAG
CGGCGGGACAATGAAATGGATGTCTAGAAGTGAGGTGCGCAATGCCAATT
GGATGATAGCGGAGGAAGAGCTTGGACTGGATTTGAAAGAGGTGGCATTG
AAAGCGATCAAGCAGATCAACGGAGAAACACATGTGTGGATACCACCGTG
GCGTTGCATAGGGTGGTTTTCTAAGGTTTTGCGGTGGATAAAGGCGGTGA
CGAAATGTGACCTTGGCGATCAGGAGCTGTACCGCAGGTTTGAAAAGTGT
GTAGACCATCATCATTCTGTGGTGTGGGCCTGTGAGCTGGATTTATCGAA
AACAGAAGTTCTATGGACTGTTTCAGTACCCAAGGTCGAAAGGATTTATG
TAAAGGCGTCGCAACCGTTACTGCAAGAAGCGCAACGAACGGCGACGATT
GCAAGGGTGCTCAGCGAGCTGGAAGTAGTTCCAGACATTATCGCGGTGGA
CGAAAATGATGGTGTCCTAATACAGCGAGATGCTTGGAGCTTCGAAGGTC
TGGAAAGTGATGTTGATGGACAGTTGTTGGTGAACACCATTGTAAGAATG
CAGAAGACATCTCTTGACCATATGGAAGAACTGCAGGCTGGGGGGCTTCA
GGTACGAGATTGTGAGTGGCTTTTAGCCAACGTTTCTCGCCTTTTTGGTC
ACAAAGGACTAGATAAAGCTGTGCAGGGCAGCAAAGAATATGAAGATATT
CTCCTAGACCTTCGATGTCGCGAGGAGGAGGTGATGGAGATATGTAAGAA
GATCTCCAGTTTTAAAGTTCCAAATACTTTAGTTCATGGAGATCTGACTT
CAGCAAACTGCGGTAGAAGGGTTTCTATGGGAGGCAACGGTTATCAGTTT
TTCGACTGGAGCTTTTCGCACATAGGACATCCATTCTCAGATGTTGATGT
TTGTCGAGACTTTTTCATGGAAAGCAAAACTGCCTGTGATCATTGGTCTC
TAGAGTACTGGAGGCAATGGAAGTCTGTGGTGAACAAAGAACAATTTTGG
AACCTGTTGGATCTGGTTCCGCTTCTGGTTGACTGTGTTCCTTTAGATTT
GTTTCTGACGGAATCTGAGTTTCAAGTTGAGGAATGGTATGGCTTGAGTC
GGCGACTGAGGGAGCATTTGACATTCATTCAAAACGACTTGGATTCGGTC
AAGCAGTCAACCAACCCCGGGTAA
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