Gchil3631.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3631.t1
Unique Name	Gchil3631.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:354738..355991 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT4G11280.1
Preferred name	ACS7
PFAMs	Aminotran_1_2
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00021,RC01124
KEGG ko	ko:K20772
KEGG Reaction	R00179
KEGG Pathway	ko00270,ko01100,ko01110,ko04016,map00270,map01100,map01110,map04016
KEGG Module	M00368
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009692,GO:0009693,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009888,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010087,GO:0010817,GO:0016053,GO:0016829,GO:0016846,GO:0016847,GO:0018871,GO:0019752,GO:0032502,GO:0032787,GO:0042218,GO:0042221,GO:0042445,GO:0042446,GO:0042802,GO:0043436,GO:0043449,GO:0043450,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0048856,GO:0050896,GO:0051301,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071704,GO:0072330,GO:1900673,GO:1900674,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
Evalue	3.54e-24
EggNOG OGs	COG0436@1\|root,KOG0256@2759\|Eukaryota,37M61@33090\|Viridiplantae,3GDW4@35493\|Streptophyta,3HSVI@3699\|Brassicales
EC	4.4.1.14
Description	1-aminocyclopropane-1-carboxylate synthase
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3631	Gchil3631	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 354738..355991 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3631.t1.start1	Gchil3631.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 354738..354740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3631.t1.CDS1	Gchil3631.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 354738..355991 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3631.t1.exon1	Gchil3631.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 354738..355991 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3631.t1.stop1	Gchil3631.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 355989..355991 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3631.t1	Gchil3631.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 354738..355991 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:354738..355991+
coding sequence from alignment at tig00025222_pilon:354738..355991+

mRNA sequence

>Gchil3631.t1 ID=Gchil3631.t1|Name=Gchil3631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MALSIRGEATVREYWDTDADQRWHPDKLESEIENFPYVKNLSPISSSVSM
ALVRKRLETLPSLPFAELAYDILHGSKRTRELIASFLSRKLVKDPVSPDQ
VVVLDGATSILSAIGICLGEEGDRVMVPSEYKHELSFMFACRAKLETVSV
SCTEYSKSARDFVRGIQAAWEDSGKESSRIRMIYVAYPNVYGAGLNPGCD
TEAMILDNIIAWATSKGLHTIVDITNALNVVDGENVGSSWNGIAAREDVH
IIWNVSKFFNIPGACLCTLTTGNKALLEILARKLSIFGSTSRQSQWVIQH
LLSDASFIDVFVEENQRNLLTAYNLCVKELQAIGIPYRVASTGYPILLDL
AGWTNHSRDDCGTGLNRFIRQCDILASDCTGTRSGLLKDIFLYYAGATPE
ELKSVLRSLRAHIQGSN*

spliced messenger RNA

>Gchil3631.t1 ID=Gchil3631.t1|Name=Gchil3631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00025222_pilon:354738..355991+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTATCCATTCGAGGTGAAGCTACTGTCCGTGAATATTGGGACAC
GGATGCAGACCAACGATGGCATCCAGATAAGCTGGAATCTGAGATAGAAA
ACTTTCCATACGTGAAGAATCTCTCTCCAATTTCTAGTTCTGTGTCAATG
GCGCTTGTTCGAAAACGCTTAGAAACTCTTCCCAGTTTGCCTTTCGCCGA
ACTCGCATACGACATTCTTCATGGATCAAAACGAACTCGCGAACTGATAG
CATCCTTTTTGTCAAGAAAACTCGTTAAGGACCCAGTCTCTCCGGATCAA
GTGGTTGTCTTAGATGGAGCAACAAGCATTCTTAGCGCAATTGGGATTTG
TCTAGGTGAGGAAGGAGATCGTGTTATGGTACCATCTGAATACAAGCATG
AGTTGTCTTTCATGTTCGCCTGTAGAGCAAAACTTGAAACGGTTTCTGTA
TCATGTACTGAGTATTCGAAATCTGCTCGCGACTTTGTGCGCGGAATTCA
AGCAGCATGGGAAGACTCAGGAAAAGAAAGCTCAAGGATCCGGATGATTT
ATGTGGCATACCCCAATGTTTACGGAGCTGGACTAAATCCGGGATGTGAC
ACGGAGGCGATGATCTTAGATAACATCATTGCCTGGGCTACATCTAAGGG
GCTACATACAATCGTTGATATTACGAACGCCCTCAATGTAGTTGATGGTG
AGAACGTCGGCAGTTCTTGGAACGGGATAGCTGCACGTGAAGATGTTCAC
ATCATTTGGAACGTCTCAAAGTTCTTCAATATACCCGGGGCTTGTTTATG
CACGTTGACGACAGGAAACAAGGCCTTGCTCGAAATTCTCGCTAGGAAAC
TGAGTATCTTTGGATCTACCAGCAGACAATCGCAATGGGTGATTCAGCAC
TTGCTTTCAGATGCAAGTTTTATTGATGTCTTTGTCGAGGAAAACCAACG
GAATTTGCTGACAGCCTACAACCTTTGCGTTAAAGAGTTACAAGCGATTG
GTATTCCGTACCGTGTTGCATCGACCGGGTATCCCATTTTGCTCGATCTT
GCTGGTTGGACCAACCACAGTCGCGACGACTGCGGAACTGGATTAAATCG
CTTTATTCGACAATGCGACATACTTGCCTCAGACTGTACGGGTACAAGAT
CAGGACTTTTGAAGGACATTTTTCTTTACTATGCTGGAGCAACTCCAGAA
GAACTGAAATCAGTTCTCCGGAGTTTAAGAGCTCACATACAGGGGTCAAA
CTAA

protein sequence of Gchil3631.t1

>Gchil3631.t1 ID=Gchil3631.t1|Name=Gchil3631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MALSIRGEATVREYWDTDADQRWHPDKLESEIENFPYVKNLSPISSSVSM
ALVRKRLETLPSLPFAELAYDILHGSKRTRELIASFLSRKLVKDPVSPDQ
VVVLDGATSILSAIGICLGEEGDRVMVPSEYKHELSFMFACRAKLETVSV
SCTEYSKSARDFVRGIQAAWEDSGKESSRIRMIYVAYPNVYGAGLNPGCD
TEAMILDNIIAWATSKGLHTIVDITNALNVVDGENVGSSWNGIAAREDVH
IIWNVSKFFNIPGACLCTLTTGNKALLEILARKLSIFGSTSRQSQWVIQH
LLSDASFIDVFVEENQRNLLTAYNLCVKELQAIGIPYRVASTGYPILLDL
AGWTNHSRDDCGTGLNRFIRQCDILASDCTGTRSGLLKDIFLYYAGATPE
ELKSVLRSLRAHIQGSN*

mRNA from alignment at tig00025222_pilon:354738..355991+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3631.t1 ID=Gchil3631.t1|Name=Gchil3631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00025222_pilon:354738..355991+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTATCCATTCGAGGTGAAGCTACTGTCCGTGAATATTGGGACAC
GGATGCAGACCAACGATGGCATCCAGATAAGCTGGAATCTGAGATAGAAA
ACTTTCCATACGTGAAGAATCTCTCTCCAATTTCTAGTTCTGTGTCAATG
GCGCTTGTTCGAAAACGCTTAGAAACTCTTCCCAGTTTGCCTTTCGCCGA
ACTCGCATACGACATTCTTCATGGATCAAAACGAACTCGCGAACTGATAG
CATCCTTTTTGTCAAGAAAACTCGTTAAGGACCCAGTCTCTCCGGATCAA
GTGGTTGTCTTAGATGGAGCAACAAGCATTCTTAGCGCAATTGGGATTTG
TCTAGGTGAGGAAGGAGATCGTGTTATGGTACCATCTGAATACAAGCATG
AGTTGTCTTTCATGTTCGCCTGTAGAGCAAAACTTGAAACGGTTTCTGTA
TCATGTACTGAGTATTCGAAATCTGCTCGCGACTTTGTGCGCGGAATTCA
AGCAGCATGGGAAGACTCAGGAAAAGAAAGCTCAAGGATCCGGATGATTT
ATGTGGCATACCCCAATGTTTACGGAGCTGGACTAAATCCGGGATGTGAC
ACGGAGGCGATGATCTTAGATAACATCATTGCCTGGGCTACATCTAAGGG
GCTACATACAATCGTTGATATTACGAACGCCCTCAATGTAGTTGATGGTG
AGAACGTCGGCAGTTCTTGGAACGGGATAGCTGCACGTGAAGATGTTCAC
ATCATTTGGAACGTCTCAAAGTTCTTCAATATACCCGGGGCTTGTTTATG
CACGTTGACGACAGGAAACAAGGCCTTGCTCGAAATTCTCGCTAGGAAAC
TGAGTATCTTTGGATCTACCAGCAGACAATCGCAATGGGTGATTCAGCAC
TTGCTTTCAGATGCAAGTTTTATTGATGTCTTTGTCGAGGAAAACCAACG
GAATTTGCTGACAGCCTACAACCTTTGCGTTAAAGAGTTACAAGCGATTG
GTATTCCGTACCGTGTTGCATCGACCGGGTATCCCATTTTGCTCGATCTT
GCTGGTTGGACCAACCACAGTCGCGACGACTGCGGAACTGGATTAAATCG
CTTTATTCGACAATGCGACATACTTGCCTCAGACTGTACGGGTACAAGAT
CAGGACTTTTGAAGGACATTTTTCTTTACTATGCTGGAGCAACTCCAGAA
GAACTGAAATCAGTTCTCCGGAGTTTAAGAGCTCACATACAGGGGTCAAA
CTAA

Coding sequence (CDS) from alignment at tig00025222_pilon:354738..355991+

>Gchil3631.t1 ID=Gchil3631.t1|Name=Gchil3631.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00025222_pilon:354738..355991+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTATCCATTCGAGGTGAAGCTACTGTCCGTGAATATTGGGACAC
GGATGCAGACCAACGATGGCATCCAGATAAGCTGGAATCTGAGATAGAAA
ACTTTCCATACGTGAAGAATCTCTCTCCAATTTCTAGTTCTGTGTCAATG
GCGCTTGTTCGAAAACGCTTAGAAACTCTTCCCAGTTTGCCTTTCGCCGA
ACTCGCATACGACATTCTTCATGGATCAAAACGAACTCGCGAACTGATAG
CATCCTTTTTGTCAAGAAAACTCGTTAAGGACCCAGTCTCTCCGGATCAA
GTGGTTGTCTTAGATGGAGCAACAAGCATTCTTAGCGCAATTGGGATTTG
TCTAGGTGAGGAAGGAGATCGTGTTATGGTACCATCTGAATACAAGCATG
AGTTGTCTTTCATGTTCGCCTGTAGAGCAAAACTTGAAACGGTTTCTGTA
TCATGTACTGAGTATTCGAAATCTGCTCGCGACTTTGTGCGCGGAATTCA
AGCAGCATGGGAAGACTCAGGAAAAGAAAGCTCAAGGATCCGGATGATTT
ATGTGGCATACCCCAATGTTTACGGAGCTGGACTAAATCCGGGATGTGAC
ACGGAGGCGATGATCTTAGATAACATCATTGCCTGGGCTACATCTAAGGG
GCTACATACAATCGTTGATATTACGAACGCCCTCAATGTAGTTGATGGTG
AGAACGTCGGCAGTTCTTGGAACGGGATAGCTGCACGTGAAGATGTTCAC
ATCATTTGGAACGTCTCAAAGTTCTTCAATATACCCGGGGCTTGTTTATG
CACGTTGACGACAGGAAACAAGGCCTTGCTCGAAATTCTCGCTAGGAAAC
TGAGTATCTTTGGATCTACCAGCAGACAATCGCAATGGGTGATTCAGCAC
TTGCTTTCAGATGCAAGTTTTATTGATGTCTTTGTCGAGGAAAACCAACG
GAATTTGCTGACAGCCTACAACCTTTGCGTTAAAGAGTTACAAGCGATTG
GTATTCCGTACCGTGTTGCATCGACCGGGTATCCCATTTTGCTCGATCTT
GCTGGTTGGACCAACCACAGTCGCGACGACTGCGGAACTGGATTAAATCG
CTTTATTCGACAATGCGACATACTTGCCTCAGACTGTACGGGTACAAGAT
CAGGACTTTTGAAGGACATTTTTCTTTACTATGCTGGAGCAACTCCAGAA
GAACTGAAATCAGTTCTCCGGAGTTTAAGAGCTCACATACAGGGGTCAAA
CTAA