Gchil3689.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3689.t1
Unique NameGchil3689.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:601766..602338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1479239.JQMU01000001_gene239
PFAMsAcetyltransf_1,Acetyltransf_10
Max annot lvl204457|Sphingomonadales
Evalue1.19e-19
EggNOG OGsCOG3153@1|root,COG3153@2|Bacteria,1QUTM@1224|Proteobacteria,2U9Q0@28211|Alphaproteobacteria,2K4VK@204457|Sphingomonadales
DescriptionAcetyltransferase (GNAT) domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3689Gchil3689Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 601766..602338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1Gchil3689.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 601766..602338 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1.stop1Gchil3689.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 601766..601768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1.CDS1Gchil3689.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 601766..601957 -
Gchil3689.t1.CDS2Gchil3689.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 602042..602338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1.exon1Gchil3689.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 601766..601957 -
Gchil3689.t1.exon2Gchil3689.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 602042..602338 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1.intron1Gchil3689.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 601958..602041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3689.t1.start1Gchil3689.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 602336..602338 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3689.t1 ID=Gchil3689.t1|Name=Gchil3689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=163bp
MDNWTHEAHILDGLRITPESLREEAKNFDIFVMEESSSRTIAGCVKTGIV
KETVVGPLPEPTGYIGLLAVAGRFQSRGLGKRLMKFAEDHCRLSGVDRVS
LDVLGVREDIIAWYERCGYRKTGHPIDSAPFFKAKGEILLMPASFILLQK
TLTHQSENMSLV*
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spliced messenger RNA

>Gchil3689.t1 ID=Gchil3689.t1|Name=Gchil3689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00025222_pilon:601766..602338- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAATTGGACTCATGAAGCTCACATTCTGGATGGTTTACGCATTAC
TCCTGAAAGTCTACGAGAAGAAGCCAAAAACTTCGATATCTTTGTCATGG
AAGAATCCAGTTCCAGAACAATAGCCGGTTGTGTGAAAACCGGAATTGTG
AAAGAAACTGTAGTAGGACCGTTGCCAGAGCCAACAGGTTACATTGGTTT
ACTTGCTGTCGCAGGTCGTTTTCAGAGTCGCGGGCTTGGAAAAAGGTTAA
TGAAATTTGCGGAAGACCATTGCAGACTTTCAGGTGTTGACAGAGTGTCA
TTAGACGTTCTTGGAGTCCGTGAAGATATCATAGCGTGGTATGAAAGATG
TGGATATAGAAAAACAGGCCATCCTATCGATAGTGCTCCATTTTTCAAAG
CCAAGGGCGAAATTTTGCTAATGCCCGCAAGTTTCATCCTCCTCCAGAAA
ACGCTTACACATCAGAGTGAAAATATGAGCCTTGTGTAA
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protein sequence of Gchil3689.t1

>Gchil3689.t1 ID=Gchil3689.t1|Name=Gchil3689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=163bp
MDNWTHEAHILDGLRITPESLREEAKNFDIFVMEESSSRTIAGCVKTGIV
KETVVGPLPEPTGYIGLLAVAGRFQSRGLGKRLMKFAEDHCRLSGVDRVS
LDVLGVREDIIAWYERCGYRKTGHPIDSAPFFKAKGEILLMPASFILLQK
TLTHQSENMSLV*
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mRNA from alignment at tig00025222_pilon:601766..602338-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3689.t1 ID=Gchil3689.t1|Name=Gchil3689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00025222_pilon:601766..602338- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAATTGGACTCATGAAGCTCACATTCTGGATGGTTTACGCATTAC
TCCTGAAAGTCTACGAGAAGAAGCCAAAAACTTCGATATCTTTGTCATGG
AAGAATCCAGTTCCAGAACAATAGCCGGTTGTGTGAAAACCGGAATTGTG
AAAGAAACTGTAGTAGGACCGTTGCCAGAGCCAACAGGTTACATTGGTTT
ACTTGCTGTCGCAGGTCGTTTTCAGAGTCGCGGGCTTGGAAAAAGGTTAA
TGAAATTTGCGGAAGACCATTGCAGACTTTCAGGTGTTGACAGAGTGGTA
AGTTTAATTCGGGAGAACATGAACTGATGCTAGTTGACAAAGAACCTTAA
GAGAATCTAACCATCGGATACTTTCTTACAGTCATTAGACGTTCTTGGAG
TCCGTGAAGATATCATAGCGTGGTATGAAAGATGTGGATATAGAAAAACA
GGCCATCCTATCGATAGTGCTCCATTTTTCAAAGCCAAGGGCGAAATTTT
GCTAATGCCCGCAAGTTTCATCCTCCTCCAGAAAACGCTTACACATCAGA
GTGAAAATATGAGCCTTGTGTAA
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Coding sequence (CDS) from alignment at tig00025222_pilon:601766..602338-

>Gchil3689.t1 ID=Gchil3689.t1|Name=Gchil3689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00025222_pilon:601766..602338- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAATTGGACTCATGAAGCTCACATTCTGGATGGTTTACGCATTAC
TCCTGAAAGTCTACGAGAAGAAGCCAAAAACTTCGATATCTTTGTCATGG
AAGAATCCAGTTCCAGAACAATAGCCGGTTGTGTGAAAACCGGAATTGTG
AAAGAAACTGTAGTAGGACCGTTGCCAGAGCCAACAGGTTACATTGGTTT
ACTTGCTGTCGCAGGTCGTTTTCAGAGTCGCGGGCTTGGAAAAAGGTTAA
TGAAATTTGCGGAAGACCATTGCAGACTTTCAGGTGTTGACAGAGTGTCA
TTAGACGTTCTTGGAGTCCGTGAAGATATCATAGCGTGGTATGAAAGATG
TGGATATAGAAAAACAGGCCATCCTATCGATAGTGCTCCATTTTTCAAAG
CCAAGGGCGAAATTTTGCTAATGCCCGCAAGTTTCATCCTCCTCCAGAAA
ACGCTTACACATCAGAGTGAAAATATGAGCCTTGTGTAA
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