Gchil8480.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8480.t1
Unique Name	Gchil8480.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	763

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004450_pilon	contig	tig00004450_pilon:300230..302518 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	4.4e-70
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8480	Gchil8480	Gracilaria chilensis NLEC103_M9 male	gene	tig00004450_pilon 300230..302518 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8480.t1.stop1	Gchil8480.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004450_pilon 300230..300232 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8480.t1.CDS1	Gchil8480.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004450_pilon 300230..302518 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8480.t1.exon1	Gchil8480.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004450_pilon 300230..302518 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8480.t1.start1	Gchil8480.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004450_pilon 302516..302518 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8480.t1	Gchil8480.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004450_pilon 300230..302518 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004450_pilon:300230..302518-
coding sequence from alignment at tig00004450_pilon:300230..302518-

mRNA sequence

>Gchil8480.t1 ID=Gchil8480.t1|Name=Gchil8480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=763bp
MARAQVCRFYDDGTSGAALRRPIKRLPEFQNSTGLFYSAKARRTSTSPHL
LHLPRSAVLQIVFVLAALLLFFAVHSPSAVVHTAASESARLNGAQVLNRL
GLGAFSREQVSRIVRANVPQELVQEGVSLAAVCMGRHETLKKTVPAWLAV
NEVDEIVLVDWSSEPPLEPIVRKIEGGDRIKIIRVDGEANWVLSRAYNLA
INSTSYSNVIRTDCDYEIGPNFVTAHKQLIRQAEEESTSSTAIEGTEEKH
YYAGNYNLARNENEVHLNGAVFIRRKDFLDVGGYDERIQTYGWDDEDLYN
RLGEAGLQKKNISYDHVSHVKHGNAGRAQSGVKFATVEIDLNSLLLEKLK
PWSNGINMGSTYDDASAPSSNKIVIRASAKPKSLKDLVTAAEYNEAWAEA
LGRRLHDSYQVPWDIIAAMAIKPKEILLRRLMQRTENREKAKRAELDAAG
RQGEIVDVDSLPIPRLLICHCMHGLGNRMRALGSCMSFAKETNREMVVVW
EPDSHIQARFTDLFVTPLVVLEKMPVQWPFEDVEKWDSAWSNFKYHNYME
MEGHGAVKGEIIRDLLAKHIYYKGAYIMEVENNALTNWEKDNDQLRSLAP
VDDVLTMVAEMESKGLGSDNVVGLHVRNRTLAKDIKNVDFVQEYGDEATK
TMDMWRHKSGVHNFMTQIDRMLKEKPSSKFFVATDTFEVIGELEKTYGTE
RILSFKRSCDERDGQCVKFALADLYSLSKCKALYGSNWSSFTEAAERLGG
VKAQLAGQDFGV*

spliced messenger RNA

>Gchil8480.t1 ID=Gchil8480.t1|Name=Gchil8480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2289bp|location=Sequence derived from alignment at tig00004450_pilon:300230..302518- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTGCACAAGTTTGTCGGTTTTACGATGACGGCACGTCTGGCGC
GGCGCTTCGTCGCCCCATAAAACGTCTCCCAGAATTTCAGAACTCGACAG
GACTGTTTTACTCCGCTAAAGCACGCCGTACGTCCACCTCACCGCACCTG
CTCCATCTTCCACGCTCTGCTGTGCTTCAGATCGTCTTTGTCCTTGCTGC
TCTTCTCCTCTTCTTCGCGGTGCACTCGCCCAGTGCTGTTGTTCATACAG
CTGCCTCAGAATCCGCTCGTCTCAACGGAGCACAGGTTCTCAATCGACTA
GGGTTAGGTGCGTTCAGTCGTGAACAAGTTTCGAGAATCGTGAGAGCCAA
TGTGCCTCAGGAGCTCGTGCAGGAAGGTGTTTCTCTGGCTGCGGTGTGTA
TGGGGCGCCATGAAACTCTGAAGAAGACGGTACCGGCGTGGCTGGCTGTG
AATGAGGTCGATGAGATTGTCTTGGTTGATTGGAGTTCGGAGCCACCCTT
GGAACCTATTGTTCGGAAAATTGAGGGTGGTGATCGTATCAAAATTATCC
GTGTAGATGGTGAAGCTAATTGGGTGTTGTCGAGAGCATACAATTTAGCC
ATCAACTCAACCAGTTACAGTAACGTAATTCGTACGGACTGTGACTATGA
GATTGGACCAAACTTCGTGACTGCGCACAAACAACTTATCCGTCAGGCAG
AGGAAGAATCAACCTCCTCAACAGCGATTGAAGGTACTGAAGAAAAGCAT
TACTACGCTGGTAATTACAACCTTGCTCGTAATGAGAATGAAGTACACTT
GAACGGTGCCGTGTTCATTCGTCGCAAGGACTTTTTGGACGTTGGTGGGT
ATGACGAACGCATTCAGACATATGGATGGGATGATGAAGACCTGTATAAC
CGACTTGGTGAGGCAGGCTTGCAGAAAAAGAACATTTCCTATGATCACGT
TTCTCATGTCAAGCATGGAAACGCTGGCCGGGCACAATCAGGTGTCAAGT
TTGCAACCGTGGAAATAGACTTGAACTCGTTATTGTTAGAGAAACTGAAA
CCATGGTCAAACGGTATTAACATGGGAAGCACTTATGACGATGCCTCAGC
CCCGTCCTCGAACAAGATCGTGATCCGTGCGTCCGCCAAACCTAAATCTC
TTAAAGACCTTGTGACTGCTGCCGAATACAATGAAGCTTGGGCCGAAGCA
TTAGGCCGCCGTCTCCATGACAGCTACCAGGTGCCGTGGGATATTATTGC
TGCAATGGCAATCAAACCGAAAGAGATTTTGCTTCGTCGCCTAATGCAGA
GAACAGAGAATCGGGAGAAGGCCAAACGTGCCGAGCTAGACGCTGCTGGG
CGTCAGGGAGAGATTGTTGATGTCGACAGCCTGCCGATTCCACGATTGCT
CATCTGCCATTGTATGCATGGCCTAGGGAATAGAATGCGTGCGCTTGGTA
GTTGCATGTCTTTCGCAAAGGAAACCAACAGAGAGATGGTTGTCGTGTGG
GAGCCCGACAGTCACATTCAGGCGAGGTTCACAGACTTGTTCGTTACTCC
ATTGGTTGTGTTGGAGAAAATGCCAGTACAATGGCCTTTTGAAGACGTGG
AAAAGTGGGATTCTGCGTGGTCGAATTTCAAGTATCACAATTATATGGAA
ATGGAAGGTCACGGAGCCGTTAAAGGTGAGATCATCCGAGATTTGCTGGC
TAAACATATCTACTATAAAGGTGCCTACATTATGGAAGTCGAGAACAATG
CGCTCACTAACTGGGAGAAGGACAATGACCAGCTTAGATCCCTCGCCCCA
GTGGACGACGTCTTGACCATGGTTGCCGAAATGGAAAGCAAAGGTCTTGG
ATCTGATAACGTAGTGGGGCTGCATGTGAGAAACCGAACCCTGGCCAAGG
ACATAAAGAACGTAGATTTCGTTCAAGAGTACGGAGATGAAGCAACAAAA
ACGATGGACATGTGGCGACACAAAAGTGGGGTACACAACTTCATGACTCA
AATTGATAGAATGCTTAAGGAAAAGCCGTCATCTAAGTTTTTCGTAGCTA
CTGATACATTTGAGGTGATTGGAGAGTTAGAAAAGACTTACGGCACTGAG
CGGATTCTTTCGTTTAAGCGGTCATGTGATGAGCGAGATGGACAGTGCGT
GAAGTTTGCTCTTGCGGACTTGTATTCTCTGTCTAAGTGCAAGGCGCTCT
ACGGGTCAAACTGGAGCTCGTTCACAGAAGCCGCGGAAAGGTTAGGTGGG
GTGAAAGCTCAGCTTGCTGGACAAGATTTCGGTGTCTAG

protein sequence of Gchil8480.t1

>Gchil8480.t1 ID=Gchil8480.t1|Name=Gchil8480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=763bp
MARAQVCRFYDDGTSGAALRRPIKRLPEFQNSTGLFYSAKARRTSTSPHL
LHLPRSAVLQIVFVLAALLLFFAVHSPSAVVHTAASESARLNGAQVLNRL
GLGAFSREQVSRIVRANVPQELVQEGVSLAAVCMGRHETLKKTVPAWLAV
NEVDEIVLVDWSSEPPLEPIVRKIEGGDRIKIIRVDGEANWVLSRAYNLA
INSTSYSNVIRTDCDYEIGPNFVTAHKQLIRQAEEESTSSTAIEGTEEKH
YYAGNYNLARNENEVHLNGAVFIRRKDFLDVGGYDERIQTYGWDDEDLYN
RLGEAGLQKKNISYDHVSHVKHGNAGRAQSGVKFATVEIDLNSLLLEKLK
PWSNGINMGSTYDDASAPSSNKIVIRASAKPKSLKDLVTAAEYNEAWAEA
LGRRLHDSYQVPWDIIAAMAIKPKEILLRRLMQRTENREKAKRAELDAAG
RQGEIVDVDSLPIPRLLICHCMHGLGNRMRALGSCMSFAKETNREMVVVW
EPDSHIQARFTDLFVTPLVVLEKMPVQWPFEDVEKWDSAWSNFKYHNYME
MEGHGAVKGEIIRDLLAKHIYYKGAYIMEVENNALTNWEKDNDQLRSLAP
VDDVLTMVAEMESKGLGSDNVVGLHVRNRTLAKDIKNVDFVQEYGDEATK
TMDMWRHKSGVHNFMTQIDRMLKEKPSSKFFVATDTFEVIGELEKTYGTE
RILSFKRSCDERDGQCVKFALADLYSLSKCKALYGSNWSSFTEAAERLGG
VKAQLAGQDFGV*

mRNA from alignment at tig00004450_pilon:300230..302518-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8480.t1 ID=Gchil8480.t1|Name=Gchil8480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2289bp|location=Sequence derived from alignment at tig00004450_pilon:300230..302518- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGCACAAGTTTGTCGGTTTTACGATGACGGCACGTCTGGCGC
GGCGCTTCGTCGCCCCATAAAACGTCTCCCAGAATTTCAGAACTCGACAG
GACTGTTTTACTCCGCTAAAGCACGCCGTACGTCCACCTCACCGCACCTG
CTCCATCTTCCACGCTCTGCTGTGCTTCAGATCGTCTTTGTCCTTGCTGC
TCTTCTCCTCTTCTTCGCGGTGCACTCGCCCAGTGCTGTTGTTCATACAG
CTGCCTCAGAATCCGCTCGTCTCAACGGAGCACAGGTTCTCAATCGACTA
GGGTTAGGTGCGTTCAGTCGTGAACAAGTTTCGAGAATCGTGAGAGCCAA
TGTGCCTCAGGAGCTCGTGCAGGAAGGTGTTTCTCTGGCTGCGGTGTGTA
TGGGGCGCCATGAAACTCTGAAGAAGACGGTACCGGCGTGGCTGGCTGTG
AATGAGGTCGATGAGATTGTCTTGGTTGATTGGAGTTCGGAGCCACCCTT
GGAACCTATTGTTCGGAAAATTGAGGGTGGTGATCGTATCAAAATTATCC
GTGTAGATGGTGAAGCTAATTGGGTGTTGTCGAGAGCATACAATTTAGCC
ATCAACTCAACCAGTTACAGTAACGTAATTCGTACGGACTGTGACTATGA
GATTGGACCAAACTTCGTGACTGCGCACAAACAACTTATCCGTCAGGCAG
AGGAAGAATCAACCTCCTCAACAGCGATTGAAGGTACTGAAGAAAAGCAT
TACTACGCTGGTAATTACAACCTTGCTCGTAATGAGAATGAAGTACACTT
GAACGGTGCCGTGTTCATTCGTCGCAAGGACTTTTTGGACGTTGGTGGGT
ATGACGAACGCATTCAGACATATGGATGGGATGATGAAGACCTGTATAAC
CGACTTGGTGAGGCAGGCTTGCAGAAAAAGAACATTTCCTATGATCACGT
TTCTCATGTCAAGCATGGAAACGCTGGCCGGGCACAATCAGGTGTCAAGT
TTGCAACCGTGGAAATAGACTTGAACTCGTTATTGTTAGAGAAACTGAAA
CCATGGTCAAACGGTATTAACATGGGAAGCACTTATGACGATGCCTCAGC
CCCGTCCTCGAACAAGATCGTGATCCGTGCGTCCGCCAAACCTAAATCTC
TTAAAGACCTTGTGACTGCTGCCGAATACAATGAAGCTTGGGCCGAAGCA
TTAGGCCGCCGTCTCCATGACAGCTACCAGGTGCCGTGGGATATTATTGC
TGCAATGGCAATCAAACCGAAAGAGATTTTGCTTCGTCGCCTAATGCAGA
GAACAGAGAATCGGGAGAAGGCCAAACGTGCCGAGCTAGACGCTGCTGGG
CGTCAGGGAGAGATTGTTGATGTCGACAGCCTGCCGATTCCACGATTGCT
CATCTGCCATTGTATGCATGGCCTAGGGAATAGAATGCGTGCGCTTGGTA
GTTGCATGTCTTTCGCAAAGGAAACCAACAGAGAGATGGTTGTCGTGTGG
GAGCCCGACAGTCACATTCAGGCGAGGTTCACAGACTTGTTCGTTACTCC
ATTGGTTGTGTTGGAGAAAATGCCAGTACAATGGCCTTTTGAAGACGTGG
AAAAGTGGGATTCTGCGTGGTCGAATTTCAAGTATCACAATTATATGGAA
ATGGAAGGTCACGGAGCCGTTAAAGGTGAGATCATCCGAGATTTGCTGGC
TAAACATATCTACTATAAAGGTGCCTACATTATGGAAGTCGAGAACAATG
CGCTCACTAACTGGGAGAAGGACAATGACCAGCTTAGATCCCTCGCCCCA
GTGGACGACGTCTTGACCATGGTTGCCGAAATGGAAAGCAAAGGTCTTGG
ATCTGATAACGTAGTGGGGCTGCATGTGAGAAACCGAACCCTGGCCAAGG
ACATAAAGAACGTAGATTTCGTTCAAGAGTACGGAGATGAAGCAACAAAA
ACGATGGACATGTGGCGACACAAAAGTGGGGTACACAACTTCATGACTCA
AATTGATAGAATGCTTAAGGAAAAGCCGTCATCTAAGTTTTTCGTAGCTA
CTGATACATTTGAGGTGATTGGAGAGTTAGAAAAGACTTACGGCACTGAG
CGGATTCTTTCGTTTAAGCGGTCATGTGATGAGCGAGATGGACAGTGCGT
GAAGTTTGCTCTTGCGGACTTGTATTCTCTGTCTAAGTGCAAGGCGCTCT
ACGGGTCAAACTGGAGCTCGTTCACAGAAGCCGCGGAAAGGTTAGGTGGG
GTGAAAGCTCAGCTTGCTGGACAAGATTTCGGTGTCTAG

Coding sequence (CDS) from alignment at tig00004450_pilon:300230..302518-

>Gchil8480.t1 ID=Gchil8480.t1|Name=Gchil8480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2289bp|location=Sequence derived from alignment at tig00004450_pilon:300230..302518- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGCACAAGTTTGTCGGTTTTACGATGACGGCACGTCTGGCGC
GGCGCTTCGTCGCCCCATAAAACGTCTCCCAGAATTTCAGAACTCGACAG
GACTGTTTTACTCCGCTAAAGCACGCCGTACGTCCACCTCACCGCACCTG
CTCCATCTTCCACGCTCTGCTGTGCTTCAGATCGTCTTTGTCCTTGCTGC
TCTTCTCCTCTTCTTCGCGGTGCACTCGCCCAGTGCTGTTGTTCATACAG
CTGCCTCAGAATCCGCTCGTCTCAACGGAGCACAGGTTCTCAATCGACTA
GGGTTAGGTGCGTTCAGTCGTGAACAAGTTTCGAGAATCGTGAGAGCCAA
TGTGCCTCAGGAGCTCGTGCAGGAAGGTGTTTCTCTGGCTGCGGTGTGTA
TGGGGCGCCATGAAACTCTGAAGAAGACGGTACCGGCGTGGCTGGCTGTG
AATGAGGTCGATGAGATTGTCTTGGTTGATTGGAGTTCGGAGCCACCCTT
GGAACCTATTGTTCGGAAAATTGAGGGTGGTGATCGTATCAAAATTATCC
GTGTAGATGGTGAAGCTAATTGGGTGTTGTCGAGAGCATACAATTTAGCC
ATCAACTCAACCAGTTACAGTAACGTAATTCGTACGGACTGTGACTATGA
GATTGGACCAAACTTCGTGACTGCGCACAAACAACTTATCCGTCAGGCAG
AGGAAGAATCAACCTCCTCAACAGCGATTGAAGGTACTGAAGAAAAGCAT
TACTACGCTGGTAATTACAACCTTGCTCGTAATGAGAATGAAGTACACTT
GAACGGTGCCGTGTTCATTCGTCGCAAGGACTTTTTGGACGTTGGTGGGT
ATGACGAACGCATTCAGACATATGGATGGGATGATGAAGACCTGTATAAC
CGACTTGGTGAGGCAGGCTTGCAGAAAAAGAACATTTCCTATGATCACGT
TTCTCATGTCAAGCATGGAAACGCTGGCCGGGCACAATCAGGTGTCAAGT
TTGCAACCGTGGAAATAGACTTGAACTCGTTATTGTTAGAGAAACTGAAA
CCATGGTCAAACGGTATTAACATGGGAAGCACTTATGACGATGCCTCAGC
CCCGTCCTCGAACAAGATCGTGATCCGTGCGTCCGCCAAACCTAAATCTC
TTAAAGACCTTGTGACTGCTGCCGAATACAATGAAGCTTGGGCCGAAGCA
TTAGGCCGCCGTCTCCATGACAGCTACCAGGTGCCGTGGGATATTATTGC
TGCAATGGCAATCAAACCGAAAGAGATTTTGCTTCGTCGCCTAATGCAGA
GAACAGAGAATCGGGAGAAGGCCAAACGTGCCGAGCTAGACGCTGCTGGG
CGTCAGGGAGAGATTGTTGATGTCGACAGCCTGCCGATTCCACGATTGCT
CATCTGCCATTGTATGCATGGCCTAGGGAATAGAATGCGTGCGCTTGGTA
GTTGCATGTCTTTCGCAAAGGAAACCAACAGAGAGATGGTTGTCGTGTGG
GAGCCCGACAGTCACATTCAGGCGAGGTTCACAGACTTGTTCGTTACTCC
ATTGGTTGTGTTGGAGAAAATGCCAGTACAATGGCCTTTTGAAGACGTGG
AAAAGTGGGATTCTGCGTGGTCGAATTTCAAGTATCACAATTATATGGAA
ATGGAAGGTCACGGAGCCGTTAAAGGTGAGATCATCCGAGATTTGCTGGC
TAAACATATCTACTATAAAGGTGCCTACATTATGGAAGTCGAGAACAATG
CGCTCACTAACTGGGAGAAGGACAATGACCAGCTTAGATCCCTCGCCCCA
GTGGACGACGTCTTGACCATGGTTGCCGAAATGGAAAGCAAAGGTCTTGG
ATCTGATAACGTAGTGGGGCTGCATGTGAGAAACCGAACCCTGGCCAAGG
ACATAAAGAACGTAGATTTCGTTCAAGAGTACGGAGATGAAGCAACAAAA
ACGATGGACATGTGGCGACACAAAAGTGGGGTACACAACTTCATGACTCA
AATTGATAGAATGCTTAAGGAAAAGCCGTCATCTAAGTTTTTCGTAGCTA
CTGATACATTTGAGGTGATTGGAGAGTTAGAAAAGACTTACGGCACTGAG
CGGATTCTTTCGTTTAAGCGGTCATGTGATGAGCGAGATGGACAGTGCGT
GAAGTTTGCTCTTGCGGACTTGTATTCTCTGTCTAAGTGCAAGGCGCTCT
ACGGGTCAAACTGGAGCTCGTTCACAGAAGCCGCGGAAAGGTTAGGTGGG
GTGAAAGCTCAGCTTGCTGGACAAGATTTCGGTGTCTAG