Gchil8489.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8489.t1
Unique NameGchil8489.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length899
Homology
BLAST of Gchil8489.t1 vs. uniprot
Match: R7QS45_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS45_CHOCR)

HSP 1 Score: 206 bits (523), Expect = 4.290e-53
Identity = 172/604 (28.48%), Postives = 270/604 (44.70%), Query Frame = 0
Query:  312 SSVLRFLLARHISFSSVEGPLF-EQVHVCSIKVSENARKEVGTPKSPN------VLGRSSLPSGNELQECLTNSARLEIINGFSSQTTPDVASIHLIICF---ANTENPTHS---NPNGRSSCIKYESHIASYFFLGLGKQLSYIGSRNVGGSPLSKCLPGIIDEAENQVAV---QVCHTLLSRPTGGGMQTSLEDVLSPCVTL--DVCQEVDVLCRDLLNTDPVLARVHRCTRLIASFFLELDQESTGRELFSGSFSEKDLFRSYISFASGSSSNSEHFWYSCYAVQFAIHTCRLVQVTQNGQTCEHHIRGVHCFLTSLSDEKCGNIPLCREVVRLFMSPAYLEDLQWFITLLKPLTNLISMYGKNDALLHCSSYSLPHHCATLPHILKSRSIGYVLHDCTKVFSEISVHIKQN-DKDFQTLRAHVFARLFTQQPDGLPPIVNNVCCLAAILNPA--------VDVDTSFFPRKEVLSRALRSLRRDSQSQIALERGLFQFQKCKGEGQGMNSEKKFSGTTPHGSF---SDNENADPLVWWMKHGNQVPELYNIALRVLGIPATCLSVIRFITNINAKCDDLRGHSRDPLREKRRFISWNLKL 885
            ++++RF +   I F + E  LF + +   +I    N R + G   S        V  R ++P GN LQ    +S   + ++   S      +S +LII F   AN +   H+    P          S IAS F    G +L YIGSRN        C+  ++ +++    +    +    + RP     Q++      P  T   DV +EVD+L + LL   PVL+R  R   L+ASFF E         LF  + +EK+    Y +  +     +      C AV+ A  T +++   Q+        +    FL ++++E  GN+ LC+E+ RL +S  YL +L+ FI ++KPL  LI  Y   D  L  S        ++ P     RS+ +VL DC     +I    +   + D + LRA    RL  Q  D  PPIV ++C LA  LNP         + VD S+  R+ V   +    +  S+S + L+R + Q Q         +  ++       G F    + E  DP +WW KHG   P+L+ IAL+VL  P     +++  + +N +  DL    +D L EK+RF+ WNL+L
Sbjct:    3 TAIVRFFVRHAIDFRAAESKLFADLLESAAISQGTNERIDQGFADSKKLQHCSGVPERYTIPHGNALQAFWEHSPAAQFVDTDLSNIGEFPSSRYLIIYFPDYANAQPSRHALRRQPTEDEGNSGEASMIASTFLWTSGAKLYYIGSRNCSHD-FKSCIAELVLQSKETCKLGKAALDQVFIGRPFETSEQSADVTKNDPVNTWISDVPREVDILAQQLLTQVPVLSRCVRRNTLLASFFRETYSSRAAVMLFGRNLAEKEQCARYKAHIALPLQLTR----CCDAVENAQQTFKILSHAQSSHKDRQRFQETSSFLHTINEESAGNVQLCQEITRLVLSQPYLNELEIFIAVMKPLAKLIEKYTCVDDSLSASDMG-----SSAPLASGGRSLAHVLPDCFSTLRDIYKEQRPELENDLRLLRAMSARRLMGQGGDEYPPIVGDICYLATFLNPTSNLAAMKGITVDESW--RRAV---SFLHFQYGSRSDVVLDRAIEQLQ---------DFHQRSGAFAEPGIFIAPDETEQEDPRIWWQKHGRLAPDLFTIALKVLDAPTAAFPIVKLASEMNGRHSDLYSTEKDELMEKKRFLLWNLRL 582          
The following BLAST results are available for this feature:
BLAST of Gchil8489.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QS45_CHOCR4.290e-5328.48Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 813..849
e-value: 2.7E-5
score: 23.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 652..865

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004450_piloncontigtig00004450_pilon:559469..562165 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8489.t1Gchil8489.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004450_pilon 559469..562165 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8489.t1 ID=Gchil8489.t1|Name=Gchil8489.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=899bp
MGTSESTEQVRTPWASCRSSFVQLTEHAASNISKAPEACIVQGESQKRRG
RPRSSVFVCFSRIEDENGVFLGNKCRFCSFTSRDKSENPTYLSRHIRTRC
SAPDHVKRALSTRSPSLASPLPISSSPTYQNVFETYRNFQAASPMDHSGL
HVGMLARHARLHEKQTMTSNATSNLMLRTSSRCQLSHSGDGNVAVSKRGS
TKLLRSGVEKTPHQPHSRNKRISRIVARTNGTERNSFLSPNPRIQESPKL
VTPRRLSPIDGAIQGPLALSDGKYLGKSVSRTSSCFNSIPELRRPSWDGR
GPLKPQPIDRISSVLRFLLARHISFSSVEGPLFEQVHVCSIKVSENARKE
VGTPKSPNVLGRSSLPSGNELQECLTNSARLEIINGFSSQTTPDVASIHL
IICFANTENPTHSNPNGRSSCIKYESHIASYFFLGLGKQLSYIGSRNVGG
SPLSKCLPGIIDEAENQVAVQVCHTLLSRPTGGGMQTSLEDVLSPCVTLD
VCQEVDVLCRDLLNTDPVLARVHRCTRLIASFFLELDQESTGRELFSGSF
SEKDLFRSYISFASGSSSNSEHFWYSCYAVQFAIHTCRLVQVTQNGQTCE
HHIRGVHCFLTSLSDEKCGNIPLCREVVRLFMSPAYLEDLQWFITLLKPL
TNLISMYGKNDALLHCSSYSLPHHCATLPHILKSRSIGYVLHDCTKVFSE
ISVHIKQNDKDFQTLRAHVFARLFTQQPDGLPPIVNNVCCLAAILNPAVD
VDTSFFPRKEVLSRALRSLRRDSQSQIALERGLFQFQKCKGEGQGMNSEK
KFSGTTPHGSFSDNENADPLVWWMKHGNQVPELYNIALRVLGIPATCLSV
IRFITNINAKCDDLRGHSRDPLREKRRFISWNLKLRKTDHLGINTGYT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf