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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708579.1 |
| Preferred name | CIRH1A |
| PFAMs | WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K06171,ko:K14548 |
| KEGG Pathway | ko03008,ko04330,ko05010,map03008,map04330,map05010 |
| KEGG Module | M00682 |
| GOs | GO:0000003,GO:0000462,GO:0001650,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010051,GO:0010073,GO:0010101,GO:0010102,GO:0010154,GO:0010305,GO:0010311,GO:0010449,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010817,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022414,GO:0022613,GO:0022622,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0035266,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1990904,GO:2000012,GO:2000112,GO:2001141 |
| Evalue | 2.84e-17 |
| EggNOG OGs | KOG2048@1|root,KOG2048@2759|Eukaryota |
| Description | maturation of SSU-rRNA |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil7521.t1 ID=Gchil7521.t1|Name=Gchil7521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp MQRSHSEKQTGSKQKNGNKPKKSSDEENSLMTFKVHECRFLQLSLVGVTA VATSPSGRYIVLARSDCTVELKDREAMWSTTSAIPADYKERDTVYTSMAF SNCGSYVFAARAHGTIEVLKITEDGLVHHVSLTPGGGEITGVAVCRDMSN VGFKLALACADGRVRIMRPDPSFFSAEDGQELPTNTAFYETLSSEKTMAP VSCVAWYINPASEEETCIAAGDRHGGIRWINPSTGSCYGTAKIPSLDQVK VVMNTIQFSQDGKQVLCGDSRGLITIWSSASNTISDEFRIDGSHGEVLSS AVHLGTEFAPRNEMGKSEVVFGTSSGEVAALRSIPGAELWSISRVRRIHT HKVCSIAVLPNGLFVSCSIDSFLAVFPSQALSGNGTFNWLWPHFRCVGQP DVQLLPDKGIALSKTSSVIEIWSFSRSTSVPVLSLRMNLERLSGLRSCSF DTQRGFMAVSTIDSFKIFRADGFKSNTVDFESVGGMEPFEISSEASSTLR GAIDMVYCGRNLVCLSKCRRRIFLFDGSRVHLLTLPPFDQKIGMFFCKLS GHSKKIMVSDSHGNVVVCTFDDSSEGMPSYRCRILRCPLQSGQATHVSAI SFSLSGTRAAVAYTDLSLCVLNLSKKHDQAELFSDKEYFVIDSCFSSIAN ALSFARTEDSVLADRSNNRQSQSKEIVGIKTYNSNEEKVRYLTRSTELRK SATVSTQ* back to topspliced messenger RNA >Gchil7521.t1 ID=Gchil7521.t1|Name=Gchil7521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00000007_pilon:1703006..1705486- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGCGATCTCACTCCGAAAAACAAACGGGATCTAAGCAGAAGAATGG AAATAAGCCAAAGAAATCGAGTGACGAGGAGAATTCTCTCATGACCTTCA AGGTTCACGAGTGCCGCTTTCTTCAACTGAGCCTTGTCGGGGTGACAGCT GTGGCTACGAGCCCTTCTGGACGATATATTGTTTTGGCTCGAAGCGATTG CACAGTCGAGCTCAAGGATCGTGAAGCCATGTGGTCTACAACCTCCGCAA TCCCAGCAGACTACAAAGAAAGAGACACGGTTTACACGAGCATGGCGTTC AGCAACTGTGGATCTTATGTGTTTGCTGCTCGTGCCCATGGTACAATTGA AGTATTAAAGATCACCGAGGATGGACTAGTTCACCACGTTTCTCTCACCC CTGGTGGCGGAGAAATAACTGGCGTGGCCGTTTGTCGAGACATGTCTAAT GTTGGATTCAAGCTAGCCCTTGCCTGTGCGGACGGCAGGGTTCGCATCAT GAGACCTGATCCGTCTTTCTTCTCAGCAGAGGATGGCCAGGAGCTTCCGA CTAATACAGCCTTCTATGAAACTTTATCATCTGAGAAAACCATGGCTCCT GTTAGTTGTGTTGCGTGGTATATCAATCCAGCTTCCGAAGAGGAAACATG TATCGCTGCTGGCGATAGACATGGGGGGATTCGATGGATTAATCCGTCCA CGGGGTCTTGTTATGGAACAGCAAAAATTCCGTCTCTTGATCAAGTCAAA GTTGTCATGAACACCATTCAGTTCTCACAAGATGGAAAGCAGGTACTTTG CGGTGATTCTCGTGGACTAATTACAATTTGGTCATCTGCTTCCAACACTA TTTCGGATGAGTTCCGGATTGACGGATCACATGGGGAAGTACTCTCATCG GCTGTGCATTTAGGCACTGAATTTGCACCACGGAATGAAATGGGAAAGTC AGAGGTTGTGTTTGGGACTTCCAGTGGGGAAGTTGCTGCCTTGCGTTCTA TACCTGGTGCAGAACTCTGGTCAATATCTCGTGTGCGGCGAATTCATACT CACAAAGTCTGCTCCATTGCCGTTCTTCCAAATGGTTTATTTGTATCTTG TTCAATAGATTCTTTTCTTGCTGTGTTTCCGAGTCAAGCTCTGTCTGGAA ATGGTACGTTCAACTGGTTGTGGCCTCACTTCAGATGTGTTGGTCAACCC GACGTGCAGCTTCTTCCTGACAAGGGCATTGCACTGTCGAAAACATCGAG CGTAATAGAGATCTGGTCGTTTTCTCGGAGCACCTCTGTACCAGTCTTGT CCTTGCGCATGAATTTAGAGCGCCTCTCTGGGCTCCGATCTTGTTCTTTC GATACTCAGCGTGGGTTCATGGCAGTGTCGACGATAGATTCTTTCAAGAT TTTCCGAGCTGACGGCTTCAAGTCAAATACAGTCGATTTCGAGTCAGTGG GGGGAATGGAGCCGTTCGAAATTTCGTCCGAGGCTTCTTCTACGTTGAGA GGAGCAATAGATATGGTCTACTGTGGGAGAAATTTGGTGTGCTTGTCGAA GTGTCGTCGGCGAATTTTTTTATTTGATGGATCGAGAGTTCATCTCTTGA CTTTACCTCCTTTTGATCAAAAGATCGGAATGTTCTTTTGCAAACTCTCC GGTCACTCAAAGAAAATCATGGTCTCAGATTCTCATGGAAACGTCGTGGT CTGTACCTTTGATGATTCTTCTGAAGGCATGCCATCCTACCGCTGTCGTA TTTTGCGTTGTCCTTTGCAGAGTGGCCAAGCCACACACGTTTCAGCCATT TCGTTTTCGTTATCGGGCACCAGAGCGGCAGTTGCATACACAGATCTGAG TCTTTGTGTGTTGAACCTGTCAAAGAAACATGATCAAGCAGAACTATTCA GTGACAAAGAGTACTTCGTAATCGACAGTTGCTTTTCATCGATTGCCAAT GCTTTGTCGTTCGCCAGAACAGAAGACTCTGTTTTAGCCGACAGAAGTAA TAATCGTCAGTCACAATCGAAAGAAATTGTTGGAATCAAGACCTACAACT CGAATGAAGAGAAAGTTCGGTACTTGACTCGATCGACTGAATTGAGAAAA TCTGCAACGGTTTCAACGCAATGA back to topprotein sequence of Gchil7521.t1 >Gchil7521.t1 ID=Gchil7521.t1|Name=Gchil7521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=708bp
MQRSHSEKQTGSKQKNGNKPKKSSDEENSLMTFKVHECRFLQLSLVGVTA VATSPSGRYIVLARSDCTVELKDREAMWSTTSAIPADYKERDTVYTSMAF SNCGSYVFAARAHGTIEVLKITEDGLVHHVSLTPGGGEITGVAVCRDMSN VGFKLALACADGRVRIMRPDPSFFSAEDGQELPTNTAFYETLSSEKTMAP VSCVAWYINPASEEETCIAAGDRHGGIRWINPSTGSCYGTAKIPSLDQVK VVMNTIQFSQDGKQVLCGDSRGLITIWSSASNTISDEFRIDGSHGEVLSS AVHLGTEFAPRNEMGKSEVVFGTSSGEVAALRSIPGAELWSISRVRRIHT HKVCSIAVLPNGLFVSCSIDSFLAVFPSQALSGNGTFNWLWPHFRCVGQP DVQLLPDKGIALSKTSSVIEIWSFSRSTSVPVLSLRMNLERLSGLRSCSF DTQRGFMAVSTIDSFKIFRADGFKSNTVDFESVGGMEPFEISSEASSTLR GAIDMVYCGRNLVCLSKCRRRIFLFDGSRVHLLTLPPFDQKIGMFFCKLS GHSKKIMVSDSHGNVVVCTFDDSSEGMPSYRCRILRCPLQSGQATHVSAI SFSLSGTRAAVAYTDLSLCVLNLSKKHDQAELFSDKEYFVIDSCFSSIAN ALSFARTEDSVLADRSNNRQSQSKEIVGIKTYNSNEEKVRYLTRSTELRK SATVSTQ* back to topmRNA from alignment at tig00000007_pilon:1703006..1705486- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil7521.t1 ID=Gchil7521.t1|Name=Gchil7521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at tig00000007_pilon:1703006..1705486- (Gracilaria chilensis NLEC103_M9 male) ATGCAGCGATCTCACTCCGAAAAACAAACGGGATCTAAGCAGAAGAATGG
AAATAAGCCAAAGAAATCGAGTGACGAGGAGAATTCTCTCATGACCTTCA
AGGTTCACGAGTGCCGCTTTCTTCAACTGAGCCTTGTCGGGGTGACAGCT
GTGGCTACGAGCCCTTCTGGACGATATATTGTTTTGGCTCGAAGCGATTG
CACAGTCGAGCTCAAGGATCGTGAAGCCATGTGGTCTACAACCTCCGCAA
TCCCAGCAGACTACAAAGAAAGAGACACGGTTTACACGAGCATGGCGTTC
AGCAACTGTGGATCTTATGTGTTTGCTGCTCGTGCCCATGGTACAATTGA
AGTATTAAAGATCACCGAGGATGGACTAGTTCACCACGTTTCTCTCACCC
CTGGTGGCGGAGAAATAACTGGCGTGGCCGTTTGTCGAGACATGTCTAAT
GTTGGATTCAAGCTAGCCCTTGCCTGTGCGGACGGCAGGGTTCGCATCAT
GAGACCTGATCCGTCTTTCTTCTCAGCAGAGGATGGCCAGGAGCTTCCGA
CTAATACAGCCTTCTATGAAACTTTATCATCTGAGAAAACCATGGCTCCT
GTTAGTTGTGTTGCGTGGTATATCAATCCAGCTTCCGAAGAGGAAACATG
TATCGCTGCTGGCGATAGACATGGGGGGATTCGATGGATTAATCCGTCCA
CGGGGTCTTGTTATGGAACAGCAAAAATTCCGTCTCTTGATCAAGTCAAA
GTTGTCATGAACACCATTCAGTTCTCACAAGATGGAAAGCAGGTACTTTG
CGGTGATTCTCGTGGACTAATTACAATTTGGTCATCTGCTTCCAACACTA
TTTCGGATGAGTTCCGGATTGACGGATCACATGGGGAAGTACTCTCATCG
GCTGTGCATTTAGGCACTGAATTTGCACCACGGAATGAAATGGGAAAGTC
AGAGGTTGTGTTTGGGACTTCCAGTGGGGAAGTTGCTGCCTTGCGTTCTA
TACCTGGTGCAGAACTCTGGTCAATATCTCGTGTGCGGCGAATTCATACT
CACAAAGTCTGCTCCATTGCCGTTCTTCCAAATGGTTTATTTGTATCTTG
TTCAATAGATTCTTTTCTTGCTGTGTTTCCGAGTCAAGCTCTGTCTGGAA
ATGGTACGTTCAACTGGTTGTGGCCTCACTTCAGATGTGTTGGTCAACCC
GACGTGCAGCTTCTTCCTGACAAGGGCATTGCACTGTCGAAAACATCGAG
CGTAATAGAGATCTGGTCGTTTTCTCGGAGCACCTCTGTACCAGTCTTGT
CCTTGCGCATGAATTTAGAGCGCCTCTCTGGGCTCCGATCTTGTTCTTTC
GATACTCAGCGTGGGTTCATGGCAGTGTCGACGATAGATTCTTTCAAGAT
TTTCCGAGCTGACGGCTTCAAGTCAAATACAGTCGATTTCGAGTCAGTGG
GGGGAATGGAGCCGTTCGAAATTTCGTCCGAGGCTTCTTCTACGTTGAGA
GGAGCAATAGATATGGTCTACTGTGGGAGAAATTTGGTGTGCTTGTCGAA
GTGTCGTCGGCGAATTTTTTTATTTGATGGATCGAGAGTTCATCTCTTGA
CTTTACCTCCTTTTGATCAAAAGATCGGAATGTTCTTTTGCAAACTCTCC
GGTCACTCAAAGAAAATCATGGTCTCAGATTCTCATGGAAACGTCGTGGT
CTGTACCTTTGATGATTCTTCTGAAGGCATGCCATCCTACCGCTGTCGTA
TTTTGCGTTGTCCTTTGCAGAGTGGCCAAGCCACACACGTTTCAGCCATT
TCGTTTTCGTTATCGGGCACCAGAGCGGCAGTTGCATACACAGATCTGAG
TCTTTGTGTGTTGAACCTGTCAAAGAAACATGATCAAGCAGAACTATTCA
GTGACAAAGAGTACTTCGTAATCGACAGTTGCTTTTCATCGATTGCCAAT
GCTTTGTCGTTCGCCAGAACAGAAGACTCTGTTTTAGTAAGTGGGGCCTC
ATTCGCAAAGCTAATACCTTTGTCGAAAATAGAAGCTCTTGGGAGAAGAA
GTTTGTCAAAAATGGAGTTTTCCCTTCATAAGCATGGAAACAGATCTAGG
GAATTCACAACCTGCTCCTCGATTTTCAGGCCGACAGAAGTAATAATCGT
CAGTCACAATCGAAAGAAATTGTTGGAATCAAGACCTACAACTCGAATGA
AGAGAAAGTTCGGTACTTGACTCGATCGACTGAATTGAGAAAATCTGCAA
CGGTAAGCTGCAGCAATTTCTTTCCATAGCGACATGGTTCTGGAGCTGTG
ATGAAGACCTCTTGATCACTCCACGCTTACGAAGTCTTAAAGACTTGATG
GGGAGGAAAAAAGGGTATTACTTCGTTGTCTTTCTGATGCTCAGAATAGT
TCAGGTCGAAATTAGAACTGACCGTCTTATACTTTGTCATCTGTTTGCCG
GTGTGTCCTTTAACAGGTTTCAACGCAATGA back to topCoding sequence (CDS) from alignment at tig00000007_pilon:1703006..1705486- >Gchil7521.t1 ID=Gchil7521.t1|Name=Gchil7521.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00000007_pilon:1703006..1705486- (Gracilaria chilensis NLEC103_M9 male) ATGCAGCGATCTCACTCCGAAAAACAAACGGGATCTAAGCAGAAGAATGG AAATAAGCCAAAGAAATCGAGTGACGAGGAGAATTCTCTCATGACCTTCA AGGTTCACGAGTGCCGCTTTCTTCAACTGAGCCTTGTCGGGGTGACAGCT GTGGCTACGAGCCCTTCTGGACGATATATTGTTTTGGCTCGAAGCGATTG CACAGTCGAGCTCAAGGATCGTGAAGCCATGTGGTCTACAACCTCCGCAA TCCCAGCAGACTACAAAGAAAGAGACACGGTTTACACGAGCATGGCGTTC AGCAACTGTGGATCTTATGTGTTTGCTGCTCGTGCCCATGGTACAATTGA AGTATTAAAGATCACCGAGGATGGACTAGTTCACCACGTTTCTCTCACCC CTGGTGGCGGAGAAATAACTGGCGTGGCCGTTTGTCGAGACATGTCTAAT GTTGGATTCAAGCTAGCCCTTGCCTGTGCGGACGGCAGGGTTCGCATCAT GAGACCTGATCCGTCTTTCTTCTCAGCAGAGGATGGCCAGGAGCTTCCGA CTAATACAGCCTTCTATGAAACTTTATCATCTGAGAAAACCATGGCTCCT GTTAGTTGTGTTGCGTGGTATATCAATCCAGCTTCCGAAGAGGAAACATG TATCGCTGCTGGCGATAGACATGGGGGGATTCGATGGATTAATCCGTCCA CGGGGTCTTGTTATGGAACAGCAAAAATTCCGTCTCTTGATCAAGTCAAA GTTGTCATGAACACCATTCAGTTCTCACAAGATGGAAAGCAGGTACTTTG CGGTGATTCTCGTGGACTAATTACAATTTGGTCATCTGCTTCCAACACTA TTTCGGATGAGTTCCGGATTGACGGATCACATGGGGAAGTACTCTCATCG GCTGTGCATTTAGGCACTGAATTTGCACCACGGAATGAAATGGGAAAGTC AGAGGTTGTGTTTGGGACTTCCAGTGGGGAAGTTGCTGCCTTGCGTTCTA TACCTGGTGCAGAACTCTGGTCAATATCTCGTGTGCGGCGAATTCATACT CACAAAGTCTGCTCCATTGCCGTTCTTCCAAATGGTTTATTTGTATCTTG TTCAATAGATTCTTTTCTTGCTGTGTTTCCGAGTCAAGCTCTGTCTGGAA ATGGTACGTTCAACTGGTTGTGGCCTCACTTCAGATGTGTTGGTCAACCC GACGTGCAGCTTCTTCCTGACAAGGGCATTGCACTGTCGAAAACATCGAG CGTAATAGAGATCTGGTCGTTTTCTCGGAGCACCTCTGTACCAGTCTTGT CCTTGCGCATGAATTTAGAGCGCCTCTCTGGGCTCCGATCTTGTTCTTTC GATACTCAGCGTGGGTTCATGGCAGTGTCGACGATAGATTCTTTCAAGAT TTTCCGAGCTGACGGCTTCAAGTCAAATACAGTCGATTTCGAGTCAGTGG GGGGAATGGAGCCGTTCGAAATTTCGTCCGAGGCTTCTTCTACGTTGAGA GGAGCAATAGATATGGTCTACTGTGGGAGAAATTTGGTGTGCTTGTCGAA GTGTCGTCGGCGAATTTTTTTATTTGATGGATCGAGAGTTCATCTCTTGA CTTTACCTCCTTTTGATCAAAAGATCGGAATGTTCTTTTGCAAACTCTCC GGTCACTCAAAGAAAATCATGGTCTCAGATTCTCATGGAAACGTCGTGGT CTGTACCTTTGATGATTCTTCTGAAGGCATGCCATCCTACCGCTGTCGTA TTTTGCGTTGTCCTTTGCAGAGTGGCCAAGCCACACACGTTTCAGCCATT TCGTTTTCGTTATCGGGCACCAGAGCGGCAGTTGCATACACAGATCTGAG TCTTTGTGTGTTGAACCTGTCAAAGAAACATGATCAAGCAGAACTATTCA GTGACAAAGAGTACTTCGTAATCGACAGTTGCTTTTCATCGATTGCCAAT GCTTTGTCGTTCGCCAGAACAGAAGACTCTGTTTTAGCCGACAGAAGTAA TAATCGTCAGTCACAATCGAAAGAAATTGTTGGAATCAAGACCTACAACT CGAATGAAGAGAAAGTTCGGTACTTGACTCGATCGACTGAATTGAGAAAA TCTGCAACGGTTTCAACGCAATGA back to top
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