Gchil10040.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10040.t1
Unique NameGchil10040.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:512755..513530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004346793.1
Preferred nameFIS1
PFAMsFis1_TPR_C,Fis1_TPR_N
Max annot lvl33154|Opisthokonta
KEGG koko:K17969
KEGG Pathwayko04137,ko04139,map04137,map04139
GOsGO:0000266,GO:0000422,GO:0001101,GO:0001300,GO:0001666,GO:0001678,GO:0001836,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005779,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007031,GO:0007154,GO:0007165,GO:0007204,GO:0007568,GO:0007569,GO:0008053,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0014823,GO:0014850,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016559,GO:0019222,GO:0019722,GO:0019725,GO:0019867,GO:0019932,GO:0022411,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030162,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031667,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032469,GO:0032471,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033500,GO:0033993,GO:0034284,GO:0034613,GO:0035556,GO:0035584,GO:0036293,GO:0042221,GO:0042579,GO:0042592,GO:0042593,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043653,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045184,GO:0045862,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051480,GO:0051560,GO:0051561,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060341,GO:0061024,GO:0061025,GO:0061726,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070482,GO:0070584,GO:0070585,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0072594,GO:0072655,GO:0080090,GO:0090087,GO:0090140,GO:0090141,GO:0090313,GO:0090314,GO:0090316,GO:0097190,GO:0097237,GO:0098573,GO:0098588,GO:0098771,GO:0098805,GO:1901214,GO:1901216,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1902617,GO:1903008,GO:1903533,GO:1903827,GO:1903829,GO:1904578,GO:1904579,GO:1904951,GO:1905395,GO:1905475,GO:1905477,GO:1990910,GO:2000116,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue3.62e-21
EggNOG OGsKOG3364@1|root,KOG3364@2759|Eukaryota,3A3F6@33154|Opisthokonta
Descriptionmitochondrial fission
COG categoryM
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10040Gchil10040Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 512755..513530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1Gchil10040.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 512755..513530 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1.start1Gchil10040.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 512755..512757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1.CDS1Gchil10040.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 512755..512961 +
Gchil10040.t1.CDS2Gchil10040.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 513042..513137 +
Gchil10040.t1.CDS3Gchil10040.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 513231..513530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1.exon1Gchil10040.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 512755..512961 +
Gchil10040.t1.exon2Gchil10040.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 513042..513137 +
Gchil10040.t1.exon3Gchil10040.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 513231..513530 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1.intron1Gchil10040.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 512962..513041 +
Gchil10040.t1.intron2Gchil10040.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 513138..513230 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10040.t1.stop1Gchil10040.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 513528..513530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10040.t1 ID=Gchil10040.t1|Name=Gchil10040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp
MSGRPAPPPPPTAAGSAPPPTPTATAPPAHQQNQHLPPVQTPFPQSNTAN
RRTELDDDLAEVDLSAELDRFEEIYMKECMKSRPNPTAKFNYAWALIRSK
ERANIRKGVIMMQGLLEDRYADRDCLYYMALGYYRLDDVVSSRKCLDKLL
KIAPNCRQAISLMDIVEDKITKDGVIGISIVSGIAVVGGLLAAAFAGGRR
*
back to top

spliced messenger RNA

>Gchil10040.t1 ID=Gchil10040.t1|Name=Gchil10040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00004442_pilon:512755..513530+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGAAGGCCCGCACCTCCACCACCACCCACCGCAGCAGGTAGTGC
ACCTCCACCAACTCCGACGGCCACTGCTCCCCCTGCACATCAACAAAATC
AACACCTGCCTCCGGTGCAAACCCCATTCCCCCAATCTAACACCGCCAAC
AGAAGAACTGAGCTGGACGATGACCTTGCTGAAGTAGATCTTAGCGCAGA
GCTTGATCGATTCGAAGAAATATACATGAAGGAATGTATGAAATCACGCC
CAAATCCTACCGCCAAGTTCAACTATGCGTGGGCGCTTATCCGATCGAAA
GAGCGAGCAAATATAAGAAAGGGTGTCATTATGATGCAAGGTTTATTGGA
AGATCGATATGCAGATCGCGATTGCTTGTACTACATGGCTTTGGGTTATT
ATAGGCTTGATGACGTCGTCTCAAGCCGGAAATGTTTGGACAAGCTTCTC
AAGATTGCTCCAAACTGCCGACAAGCCATTTCTCTAATGGACATTGTAGA
GGATAAAATCACAAAGGACGGTGTGATTGGGATATCAATCGTCTCAGGCA
TTGCGGTCGTCGGTGGGCTTCTTGCCGCCGCATTCGCCGGCGGTCGACGA
TAA
back to top

protein sequence of Gchil10040.t1

>Gchil10040.t1 ID=Gchil10040.t1|Name=Gchil10040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=201bp
MSGRPAPPPPPTAAGSAPPPTPTATAPPAHQQNQHLPPVQTPFPQSNTAN
RRTELDDDLAEVDLSAELDRFEEIYMKECMKSRPNPTAKFNYAWALIRSK
ERANIRKGVIMMQGLLEDRYADRDCLYYMALGYYRLDDVVSSRKCLDKLL
KIAPNCRQAISLMDIVEDKITKDGVIGISIVSGIAVVGGLLAAAFAGGRR
*
back to top

mRNA from alignment at tig00004442_pilon:512755..513530+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10040.t1 ID=Gchil10040.t1|Name=Gchil10040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=776bp|location=Sequence derived from alignment at tig00004442_pilon:512755..513530+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGGAAGGCCCGCACCTCCACCACCACCCACCGCAGCAGGTAGTGC
ACCTCCACCAACTCCGACGGCCACTGCTCCCCCTGCACATCAACAAAATC
AACACCTGCCTCCGGTGCAAACCCCATTCCCCCAATCTAACACCGCCAAC
AGAAGAACTGAGCTGGACGATGACCTTGCTGAAGTAGATCTTAGCGCAGA
GCTTGATGTAAGTACATTCACTTTGTAACTCTCAACATCGGTGACGTTCA
TGCCACTAACGCTAGCTTATTTTGACCTTGTTTATAGCGATTCGAAGAAA
TATACATGAAGGAATGTATGAAATCACGCCCAAATCCTACCGCCAAGTTC
AACTATGCGTGGGCGCTTATCCGATCGAAAGAGGTACGCTTCAATCCCCT
AGCATGGGTCCTTCAAACACTTATCATCATAAGTCTTCTGCATCTAACAT
TTGCTCCTGCTCTTTATTCTTTTTAGCGAGCAAATATAAGAAAGGGTGTC
ATTATGATGCAAGGTTTATTGGAAGATCGATATGCAGATCGCGATTGCTT
GTACTACATGGCTTTGGGTTATTATAGGCTTGATGACGTCGTCTCAAGCC
GGAAATGTTTGGACAAGCTTCTCAAGATTGCTCCAAACTGCCGACAAGCC
ATTTCTCTAATGGACATTGTAGAGGATAAAATCACAAAGGACGGTGTGAT
TGGGATATCAATCGTCTCAGGCATTGCGGTCGTCGGTGGGCTTCTTGCCG
CCGCATTCGCCGGCGGTCGACGATAA
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:512755..513530+

>Gchil10040.t1 ID=Gchil10040.t1|Name=Gchil10040.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00004442_pilon:512755..513530+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGGAAGGCCCGCACCTCCACCACCACCCACCGCAGCAGGTAGTGC
ACCTCCACCAACTCCGACGGCCACTGCTCCCCCTGCACATCAACAAAATC
AACACCTGCCTCCGGTGCAAACCCCATTCCCCCAATCTAACACCGCCAAC
AGAAGAACTGAGCTGGACGATGACCTTGCTGAAGTAGATCTTAGCGCAGA
GCTTGATCGATTCGAAGAAATATACATGAAGGAATGTATGAAATCACGCC
CAAATCCTACCGCCAAGTTCAACTATGCGTGGGCGCTTATCCGATCGAAA
GAGCGAGCAAATATAAGAAAGGGTGTCATTATGATGCAAGGTTTATTGGA
AGATCGATATGCAGATCGCGATTGCTTGTACTACATGGCTTTGGGTTATT
ATAGGCTTGATGACGTCGTCTCAAGCCGGAAATGTTTGGACAAGCTTCTC
AAGATTGCTCCAAACTGCCGACAAGCCATTTCTCTAATGGACATTGTAGA
GGATAAAATCACAAAGGACGGTGTGATTGGGATATCAATCGTCTCAGGCA
TTGCGGTCGTCGGTGGGCTTCTTGCCGCCGCATTCGCCGGCGGTCGACGA
TAA
back to top