Gchil10011.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10011.t1
Unique NameGchil10011.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length573
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:248616..250422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10011Gchil10011Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 248616..250422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1Gchil10011.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 248616..250422 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1.start1Gchil10011.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 248616..248618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1.CDS1Gchil10011.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 248616..249887 +
Gchil10011.t1.CDS2Gchil10011.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 249976..250422 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1.exon1Gchil10011.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 248616..249887 +
Gchil10011.t1.exon2Gchil10011.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 249976..250422 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1.intron1Gchil10011.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 249888..249975 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10011.t1.stop1Gchil10011.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 250420..250422 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10011.t1 ID=Gchil10011.t1|Name=Gchil10011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp
MAKANSRQIQRRFLQNKSEDSVFKFLLLLAVLITVSSLTFIQFALTKLTN
ASVFSARRRNVVSPPPSVSIWSPKASCSGTFTSATADHSDPPFPSVVIRD
AVVDHRYLSMRQFKDVHPSIPFTRIILYTSVHLSTSLTREDATAQLLVQN
SSSFSLRAHVDYVTRVDPFLILGPYKSKKKTKRGHQVSEWQVAVSIRPAA
EESELTQDEFTQQIRSLAKENGAVLSLVLPLKRFDGVIQRFDPAFDLGCV
TDWESPHVYPANEKLNGEPECYYGLGDVSGTLLVSGSALYGVKKTDPRCY
REIAHFAARALQGHLRYDTVAMSIVVNNSYSDRDIACGDDNKCHGVMRKR
NYDLLENVRRVVESVFDEILLARPLWNRLILVPYGRLGSDANGTEASDPG
RSSHRYGQYHATFFTYAMLSPYFKWAVSYDMDEFIARVPFKRRYTVSSEN
AEDVLDRATSSLHGYAYFTWLNFLVPDNSSNKLTEEIMKGSIPVLNGDRD
CYALGRDPTGKSAVRCDVGLGFTIHRPVIRQKSSDPTILNQIQGERRSNK
LRTWHPRIGRSSSKCIFVPKGI*
back to top

spliced messenger RNA

>Gchil10011.t1 ID=Gchil10011.t1|Name=Gchil10011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00004442_pilon:248616..250422+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGGCGAACAGTCGTCAAATTCAGCGACGCTTCCTTCAGAACAA
ATCTGAAGATTCAGTCTTCAAATTCCTACTTCTTCTGGCAGTTCTCATAA
CTGTATCATCTCTCACTTTTATTCAGTTCGCCCTGACAAAGCTCACCAAT
GCCTCTGTATTCTCTGCTCGAAGAAGAAATGTCGTATCTCCTCCTCCATC
AGTCTCAATATGGTCACCGAAAGCTTCGTGTTCTGGCACGTTCACCTCCG
CAACTGCCGACCATTCAGATCCTCCATTCCCATCTGTGGTGATCAGGGAT
GCAGTGGTAGACCATCGGTATCTATCAATGAGGCAATTCAAAGATGTCCA
TCCTTCGATACCGTTTACAAGGATAATTCTCTACACTAGTGTTCACCTAT
CTACTTCTCTCACCCGTGAAGATGCAACAGCTCAATTGCTTGTGCAAAAT
AGCTCTTCCTTTTCTCTTCGAGCCCACGTTGACTATGTCACTCGAGTTGA
TCCGTTTCTCATTCTGGGCCCTTACAAGTCAAAGAAGAAAACAAAGCGAG
GTCATCAAGTCAGTGAATGGCAAGTTGCAGTATCGATTAGGCCTGCTGCA
GAAGAATCTGAGCTTACTCAAGACGAATTCACGCAGCAAATCAGAAGCCT
TGCGAAAGAAAACGGTGCTGTTTTGTCACTCGTTCTGCCTCTCAAGCGAT
TTGATGGTGTCATACAGCGATTCGATCCTGCTTTCGATCTTGGATGCGTC
ACAGACTGGGAATCTCCTCATGTATATCCAGCGAATGAAAAGCTAAATGG
TGAACCTGAATGTTATTATGGACTAGGTGACGTGAGCGGTACACTTTTGG
TTTCAGGAAGCGCTCTTTACGGTGTAAAGAAGACCGACCCCAGGTGCTAC
CGAGAAATAGCCCATTTCGCCGCGAGAGCGCTTCAAGGTCATCTACGATA
TGATACTGTTGCCATGTCAATTGTTGTGAATAATTCCTATTCTGATCGAG
ACATTGCGTGCGGCGATGACAACAAATGTCACGGTGTTATGCGTAAACGT
AATTATGATTTATTGGAGAATGTGCGCAGAGTTGTTGAGAGTGTGTTCGA
CGAAATTTTGCTTGCTCGTCCCCTTTGGAACAGGTTGATTTTGGTTCCAT
ATGGAAGGCTTGGAAGCGATGCAAACGGTACCGAGGCAAGCGACCCGGGT
CGTTCCTCTCATCGCTATGGACAGTATCATGCCACTTTCTTCACATACGC
AATGCTATCTCCATATTTCAAGTGGGCTGTGAGCTATGATATGGACGAGT
TCATAGCAAGAGTACCTTTCAAGAGAAGATATACAGTTTCTTCAGAAAAT
GCAGAAGATGTTCTGGATCGAGCGACGAGCAGCCTTCATGGATATGCATA
CTTCACGTGGTTGAACTTTCTTGTTCCGGATAACTCATCTAATAAACTAA
CAGAAGAGATCATGAAAGGATCGATTCCAGTTCTAAATGGCGATAGAGAC
TGCTACGCTCTTGGACGAGATCCCACGGGGAAGTCTGCTGTTCGTTGTGA
TGTTGGACTAGGGTTTACTATACACAGACCTGTAATCAGACAGAAGAGTT
CCGATCCAACGATACTGAATCAAATTCAAGGCGAAAGAAGGAGCAATAAG
TTGAGAACATGGCATCCAAGAATCGGCCGCAGTAGCAGTAAGTGCATTTT
CGTTCCGAAAGGCATTTAA
back to top

protein sequence of Gchil10011.t1

>Gchil10011.t1 ID=Gchil10011.t1|Name=Gchil10011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=573bp
MAKANSRQIQRRFLQNKSEDSVFKFLLLLAVLITVSSLTFIQFALTKLTN
ASVFSARRRNVVSPPPSVSIWSPKASCSGTFTSATADHSDPPFPSVVIRD
AVVDHRYLSMRQFKDVHPSIPFTRIILYTSVHLSTSLTREDATAQLLVQN
SSSFSLRAHVDYVTRVDPFLILGPYKSKKKTKRGHQVSEWQVAVSIRPAA
EESELTQDEFTQQIRSLAKENGAVLSLVLPLKRFDGVIQRFDPAFDLGCV
TDWESPHVYPANEKLNGEPECYYGLGDVSGTLLVSGSALYGVKKTDPRCY
REIAHFAARALQGHLRYDTVAMSIVVNNSYSDRDIACGDDNKCHGVMRKR
NYDLLENVRRVVESVFDEILLARPLWNRLILVPYGRLGSDANGTEASDPG
RSSHRYGQYHATFFTYAMLSPYFKWAVSYDMDEFIARVPFKRRYTVSSEN
AEDVLDRATSSLHGYAYFTWLNFLVPDNSSNKLTEEIMKGSIPVLNGDRD
CYALGRDPTGKSAVRCDVGLGFTIHRPVIRQKSSDPTILNQIQGERRSNK
LRTWHPRIGRSSSKCIFVPKGI*
back to top

mRNA from alignment at tig00004442_pilon:248616..250422+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10011.t1 ID=Gchil10011.t1|Name=Gchil10011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1807bp|location=Sequence derived from alignment at tig00004442_pilon:248616..250422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGCGAACAGTCGTCAAATTCAGCGACGCTTCCTTCAGAACAA
ATCTGAAGATTCAGTCTTCAAATTCCTACTTCTTCTGGCAGTTCTCATAA
CTGTATCATCTCTCACTTTTATTCAGTTCGCCCTGACAAAGCTCACCAAT
GCCTCTGTATTCTCTGCTCGAAGAAGAAATGTCGTATCTCCTCCTCCATC
AGTCTCAATATGGTCACCGAAAGCTTCGTGTTCTGGCACGTTCACCTCCG
CAACTGCCGACCATTCAGATCCTCCATTCCCATCTGTGGTGATCAGGGAT
GCAGTGGTAGACCATCGGTATCTATCAATGAGGCAATTCAAAGATGTCCA
TCCTTCGATACCGTTTACAAGGATAATTCTCTACACTAGTGTTCACCTAT
CTACTTCTCTCACCCGTGAAGATGCAACAGCTCAATTGCTTGTGCAAAAT
AGCTCTTCCTTTTCTCTTCGAGCCCACGTTGACTATGTCACTCGAGTTGA
TCCGTTTCTCATTCTGGGCCCTTACAAGTCAAAGAAGAAAACAAAGCGAG
GTCATCAAGTCAGTGAATGGCAAGTTGCAGTATCGATTAGGCCTGCTGCA
GAAGAATCTGAGCTTACTCAAGACGAATTCACGCAGCAAATCAGAAGCCT
TGCGAAAGAAAACGGTGCTGTTTTGTCACTCGTTCTGCCTCTCAAGCGAT
TTGATGGTGTCATACAGCGATTCGATCCTGCTTTCGATCTTGGATGCGTC
ACAGACTGGGAATCTCCTCATGTATATCCAGCGAATGAAAAGCTAAATGG
TGAACCTGAATGTTATTATGGACTAGGTGACGTGAGCGGTACACTTTTGG
TTTCAGGAAGCGCTCTTTACGGTGTAAAGAAGACCGACCCCAGGTGCTAC
CGAGAAATAGCCCATTTCGCCGCGAGAGCGCTTCAAGGTCATCTACGATA
TGATACTGTTGCCATGTCAATTGTTGTGAATAATTCCTATTCTGATCGAG
ACATTGCGTGCGGCGATGACAACAAATGTCACGGTGTTATGCGTAAACGT
AATTATGATTTATTGGAGAATGTGCGCAGAGTTGTTGAGAGTGTGTTCGA
CGAAATTTTGCTTGCTCGTCCCCTTTGGAACAGGTTGATTTTGGTTCCAT
ATGGAAGGCTTGGAAGCGATGCAAACGGTACCGAGGCAAGCGACCCGGGT
CGTTCCTCTCATCGCTATGGACAGTATCATGCCACTTTCTTCACATACGC
AATGCTATCTCCATATTTCAAGGTAAGTGGAAAGGGATCGTTTTCGTGTT
TCTCCCAAACCAGAAATTGCACCAAGATTTGCCCCATCTAACATCTCAAA
TGTGTCTTAGTGGGCTGTGAGCTATGATATGGACGAGTTCATAGCAAGAG
TACCTTTCAAGAGAAGATATACAGTTTCTTCAGAAAATGCAGAAGATGTT
CTGGATCGAGCGACGAGCAGCCTTCATGGATATGCATACTTCACGTGGTT
GAACTTTCTTGTTCCGGATAACTCATCTAATAAACTAACAGAAGAGATCA
TGAAAGGATCGATTCCAGTTCTAAATGGCGATAGAGACTGCTACGCTCTT
GGACGAGATCCCACGGGGAAGTCTGCTGTTCGTTGTGATGTTGGACTAGG
GTTTACTATACACAGACCTGTAATCAGACAGAAGAGTTCCGATCCAACGA
TACTGAATCAAATTCAAGGCGAAAGAAGGAGCAATAAGTTGAGAACATGG
CATCCAAGAATCGGCCGCAGTAGCAGTAAGTGCATTTTCGTTCCGAAAGG
CATTTAA
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:248616..250422+

>Gchil10011.t1 ID=Gchil10011.t1|Name=Gchil10011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1719bp|location=Sequence derived from alignment at tig00004442_pilon:248616..250422+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAGGCGAACAGTCGTCAAATTCAGCGACGCTTCCTTCAGAACAA
ATCTGAAGATTCAGTCTTCAAATTCCTACTTCTTCTGGCAGTTCTCATAA
CTGTATCATCTCTCACTTTTATTCAGTTCGCCCTGACAAAGCTCACCAAT
GCCTCTGTATTCTCTGCTCGAAGAAGAAATGTCGTATCTCCTCCTCCATC
AGTCTCAATATGGTCACCGAAAGCTTCGTGTTCTGGCACGTTCACCTCCG
CAACTGCCGACCATTCAGATCCTCCATTCCCATCTGTGGTGATCAGGGAT
GCAGTGGTAGACCATCGGTATCTATCAATGAGGCAATTCAAAGATGTCCA
TCCTTCGATACCGTTTACAAGGATAATTCTCTACACTAGTGTTCACCTAT
CTACTTCTCTCACCCGTGAAGATGCAACAGCTCAATTGCTTGTGCAAAAT
AGCTCTTCCTTTTCTCTTCGAGCCCACGTTGACTATGTCACTCGAGTTGA
TCCGTTTCTCATTCTGGGCCCTTACAAGTCAAAGAAGAAAACAAAGCGAG
GTCATCAAGTCAGTGAATGGCAAGTTGCAGTATCGATTAGGCCTGCTGCA
GAAGAATCTGAGCTTACTCAAGACGAATTCACGCAGCAAATCAGAAGCCT
TGCGAAAGAAAACGGTGCTGTTTTGTCACTCGTTCTGCCTCTCAAGCGAT
TTGATGGTGTCATACAGCGATTCGATCCTGCTTTCGATCTTGGATGCGTC
ACAGACTGGGAATCTCCTCATGTATATCCAGCGAATGAAAAGCTAAATGG
TGAACCTGAATGTTATTATGGACTAGGTGACGTGAGCGGTACACTTTTGG
TTTCAGGAAGCGCTCTTTACGGTGTAAAGAAGACCGACCCCAGGTGCTAC
CGAGAAATAGCCCATTTCGCCGCGAGAGCGCTTCAAGGTCATCTACGATA
TGATACTGTTGCCATGTCAATTGTTGTGAATAATTCCTATTCTGATCGAG
ACATTGCGTGCGGCGATGACAACAAATGTCACGGTGTTATGCGTAAACGT
AATTATGATTTATTGGAGAATGTGCGCAGAGTTGTTGAGAGTGTGTTCGA
CGAAATTTTGCTTGCTCGTCCCCTTTGGAACAGGTTGATTTTGGTTCCAT
ATGGAAGGCTTGGAAGCGATGCAAACGGTACCGAGGCAAGCGACCCGGGT
CGTTCCTCTCATCGCTATGGACAGTATCATGCCACTTTCTTCACATACGC
AATGCTATCTCCATATTTCAAGTGGGCTGTGAGCTATGATATGGACGAGT
TCATAGCAAGAGTACCTTTCAAGAGAAGATATACAGTTTCTTCAGAAAAT
GCAGAAGATGTTCTGGATCGAGCGACGAGCAGCCTTCATGGATATGCATA
CTTCACGTGGTTGAACTTTCTTGTTCCGGATAACTCATCTAATAAACTAA
CAGAAGAGATCATGAAAGGATCGATTCCAGTTCTAAATGGCGATAGAGAC
TGCTACGCTCTTGGACGAGATCCCACGGGGAAGTCTGCTGTTCGTTGTGA
TGTTGGACTAGGGTTTACTATACACAGACCTGTAATCAGACAGAAGAGTT
CCGATCCAACGATACTGAATCAAATTCAAGGCGAAAGAAGGAGCAATAAG
TTGAGAACATGGCATCCAAGAATCGGCCGCAGTAGCAGTAAGTGCATTTT
CGTTCCGAAAGGCATTTAA
back to top