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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 42256.RradSPS_2310 |
Preferred name | menC |
PFAMs | MR_MLE_C |
Max annot lvl | 2|Bacteria |
KEGG rclass | RC00302,RC01053,RC03309 |
KEGG ko | ko:K01776,ko:K02549,ko:K19802 |
KEGG Reaction | R00260,R04031,R10938 |
KEGG Pathway | ko00130,ko00471,ko01100,ko01110,map00130,map00471,map01100,map01110 |
KEGG Module | M00116 |
GOs | GO:0008150,GO:0040007 |
Evalue | 7.18e-29 |
EggNOG OGs | COG4948@1|root,COG4948@2|Bacteria |
EC | 4.2.1.113,5.1.1.20,5.1.1.3 |
Description | carboxylic acid catabolic process |
COG category | M |
BiGG Reaction | iNJ661.Rv0553,iSB619.SA_RS09080 |
BRITE | ko00000,ko00001,ko00002,ko01000,ko01011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp MTSTSGPIRDPVLYFYGTCDRKYAAMAVQLQKLSLNFRCIPIQGAGHNIL LDSPNALLKNIEDFLKNRSHSSSEFFTILSTVKFEAYSIPLTKPMVVGGR KVARREGLVVSLVANNNCMGVGDVCPLPGLHHEDIRRCVEEVRDLSSKLH ALSNPFKLTSNQDLLEFFDFVKSYSPVSRNGFEAAFVQLLSQALGQSCSA TITSCASHFLNKDLTTSDFVNINGVLPRTSNSTVPPVASPSDSQHRESMN VSPFEVVKLKVGACENIEDEIQTVRKAVSAAISSGKRIRLDANRAWTPSQ YEQFETQLTEFAEWIDYIEEPLSTPEQLHQFIVAPLGQSATIPLALDESI SDCSLEMIQDMASSATCRTLVLKPAVIGSLRNIFRLVSTANKCGCEIVFS SVFESGIGTAWTSVLASVLGSSQQHHGLGTYKHLLSDVTVPSFDEAVGQG DGRISSKKCEQFLAQAAETIFNK* back to topspliced messenger RNA >Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC AGAAACGATCTTCAACAAGTAA back to topprotein sequence of Gchil10004.t1 >Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MTSTSGPIRDPVLYFYGTCDRKYAAMAVQLQKLSLNFRCIPIQGAGHNIL LDSPNALLKNIEDFLKNRSHSSSEFFTILSTVKFEAYSIPLTKPMVVGGR KVARREGLVVSLVANNNCMGVGDVCPLPGLHHEDIRRCVEEVRDLSSKLH ALSNPFKLTSNQDLLEFFDFVKSYSPVSRNGFEAAFVQLLSQALGQSCSA TITSCASHFLNKDLTTSDFVNINGVLPRTSNSTVPPVASPSDSQHRESMN VSPFEVVKLKVGACENIEDEIQTVRKAVSAAISSGKRIRLDANRAWTPSQ YEQFETQLTEFAEWIDYIEEPLSTPEQLHQFIVAPLGQSATIPLALDESI SDCSLEMIQDMASSATCRTLVLKPAVIGSLRNIFRLVSTANKCGCEIVFS SVFESGIGTAWTSVLASVLGSSQQHHGLGTYKHLLSDVTVPSFDEAVGQG DGRISSKKCEQFLAQAAETIFNK* back to topmRNA from alignment at tig00004442_pilon:224777..226198- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male) ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG
AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA
GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT
TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA
TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT
TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT
AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA
TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG
ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT
GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT
TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG
CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA
ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC
GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG
TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT
GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT
AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA
GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG
TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA
CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG
CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT
AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG
TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT
TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC
TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG
CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC
TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA
GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC
AGAAACGATCTTCAACAAGTAA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:224777..226198- >Gchil10004.t1 ID=Gchil10004.t1|Name=Gchil10004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004442_pilon:224777..226198- (Gracilaria chilensis NLEC103_M9 male) ATGACTTCTACTTCAGGGCCTATACGAGATCCTGTTCTTTACTTTTACGG AACATGTGATAGAAAGTATGCAGCGATGGCAGTGCAATTGCAGAAGCTTA GTTTAAACTTTCGATGCATCCCTATCCAGGGTGCCGGTCACAATATACTT TTGGATTCACCAAATGCATTACTGAAAAACATCGAAGATTTTCTAAAGAA TAGAAGCCATTCTTCATCGGAATTCTTCACCATTTTAAGTACTGTGAAAT TCGAAGCATATTCGATTCCTCTGACAAAACCAATGGTGGTGGGAGGGCGT AAAGTTGCGAGAAGAGAAGGATTAGTTGTCTCTTTAGTGGCCAACAACAA TTGTATGGGCGTGGGAGACGTGTGCCCACTTCCTGGTCTACATCACGAAG ATATCCGTCGTTGTGTAGAAGAGGTTCGGGATCTGTCTTCTAAGCTTCAT GCACTTTCCAATCCTTTCAAACTTACTTCAAATCAAGACTTGCTTGAGTT TTTCGATTTCGTTAAGAGCTACTCCCCAGTTTCAAGGAATGGTTTCGAAG CTGCGTTTGTTCAACTCCTTAGTCAAGCGCTCGGCCAGTCTTGTTCCGCA ACTATTACTTCTTGCGCCTCGCATTTTTTGAACAAGGACTTGACAACTTC GGATTTTGTCAACATTAATGGAGTTCTACCGCGAACATCAAACAGCACTG TTCCACCCGTTGCTTCACCTTCTGACTCGCAACATCGTGAGTCTATGAAT GTCTCACCATTCGAAGTAGTGAAGTTGAAAGTTGGTGCTTGCGAAAATAT AGAAGACGAAATCCAAACCGTCCGAAAAGCAGTTTCTGCCGCAATAAGCA GTGGAAAACGGATACGGCTTGATGCCAATCGAGCATGGACCCCGTCACAG TACGAACAATTCGAAACTCAGTTGACAGAATTTGCTGAATGGATTGACTA CATTGAGGAACCGCTTAGCACACCAGAACAATTGCACCAATTCATTGTAG CCCCGCTTGGACAATCTGCTACAATTCCTCTGGCTTTAGATGAGTCGATT AGTGATTGCTCACTTGAAATGATTCAAGACATGGCTTCCTCTGCGACATG TCGAACTCTCGTCTTGAAGCCAGCGGTGATTGGTTCACTACGCAACATTT TCCGACTGGTTTCCACTGCAAACAAATGTGGTTGCGAGATCGTTTTCAGC TCTGTTTTCGAAAGTGGGATTGGAACTGCTTGGACTTCTGTACTTGCCAG CGTGTTAGGCAGTAGTCAACAACATCACGGCTTGGGAACTTATAAGCACC TACTGAGCGATGTGACAGTGCCATCTTTTGATGAAGCGGTTGGCCAAGGA GATGGACGAATATCGAGCAAAAAGTGCGAGCAATTCCTAGCTCAAGCTGC AGAAACGATCTTCAACAAGTAA back to top
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