Gchil10010.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10010.t1
Unique NameGchil10010.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:247294..248031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53788
Preferred nameEIF6
PFAMseIF-6
Max annot lvl2759|Eukaryota
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
Evalue4.46e-138
EggNOG OGsCOG1976@1|root,KOG3185@2759|Eukaryota
Descriptionmature ribosome assembly
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10010Gchil10010Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 247294..248031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10010.t1.stop1Gchil10010.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 247294..247296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10010.t1.CDS1Gchil10010.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 247294..248031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10010.t1.exon1Gchil10010.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 247294..248031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10010.t1.start1Gchil10010.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 248029..248031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10010.t1Gchil10010.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 247294..248031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10010.t1 ID=Gchil10010.t1|Name=Gchil10010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MAVRCHFENSNEVGVFSKLTNSYCLVASGASENFYSVFEAELADHIPIVH
ASIAGTRIIGRLCVGNNKGLLLPNTTTDQEMQHIKNSLPDKVVVQRCDER
LSALGNCIATNDYVSLAHTDLDRETEEVIADVLGTEVFRQSIAGEVLVGS
YCIFTNQGGLLHPMTSIEDQDELSSLLQIPLVAGTVNRGSEVVGSGMVVN
DWAAFCGSDTTSTEIQVIETIFKLKDAQPSDLVSKIKGALIDNLS*
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spliced messenger RNA

>Gchil10010.t1 ID=Gchil10010.t1|Name=Gchil10010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004442_pilon:247294..248031- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTTCGCTGTCACTTTGAGAACAGCAATGAGGTCGGCGTTTTCTC
TAAGCTCACCAACTCATATTGTCTTGTCGCCTCAGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCTGATCATATTCCAATCGTTCAT
GCTTCAATAGCAGGCACCCGCATCATAGGTCGTCTCTGCGTTGGAAATAA
CAAGGGTTTATTGCTACCAAATACAACTACCGATCAAGAAATGCAACACA
TCAAGAATTCCTTACCTGACAAAGTGGTTGTTCAGCGTTGCGATGAGCGG
CTTTCAGCGCTTGGGAATTGTATTGCTACCAATGATTACGTATCGCTCGC
GCATACCGATTTAGACAGAGAAACGGAGGAAGTCATTGCGGATGTGCTCG
GTACTGAAGTTTTTCGCCAATCTATTGCAGGTGAGGTTTTGGTTGGATCG
TATTGCATATTTACCAACCAAGGTGGACTCTTACATCCCATGACTTCAAT
AGAAGATCAAGACGAACTCTCAAGCTTGCTGCAGATTCCTCTAGTAGCAG
GAACGGTCAATCGCGGTAGTGAAGTAGTTGGTTCAGGCATGGTTGTCAAC
GACTGGGCTGCATTCTGCGGCTCGGATACAACATCGACAGAAATTCAAGT
TATTGAGACTATCTTCAAACTCAAGGATGCTCAACCATCAGATCTTGTTT
CCAAAATCAAAGGGGCACTCATTGACAATCTTTCGTAG
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protein sequence of Gchil10010.t1

>Gchil10010.t1 ID=Gchil10010.t1|Name=Gchil10010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MAVRCHFENSNEVGVFSKLTNSYCLVASGASENFYSVFEAELADHIPIVH
ASIAGTRIIGRLCVGNNKGLLLPNTTTDQEMQHIKNSLPDKVVVQRCDER
LSALGNCIATNDYVSLAHTDLDRETEEVIADVLGTEVFRQSIAGEVLVGS
YCIFTNQGGLLHPMTSIEDQDELSSLLQIPLVAGTVNRGSEVVGSGMVVN
DWAAFCGSDTTSTEIQVIETIFKLKDAQPSDLVSKIKGALIDNLS*
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mRNA from alignment at tig00004442_pilon:247294..248031-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10010.t1 ID=Gchil10010.t1|Name=Gchil10010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004442_pilon:247294..248031- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTTCGCTGTCACTTTGAGAACAGCAATGAGGTCGGCGTTTTCTC
TAAGCTCACCAACTCATATTGTCTTGTCGCCTCAGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCTGATCATATTCCAATCGTTCAT
GCTTCAATAGCAGGCACCCGCATCATAGGTCGTCTCTGCGTTGGAAATAA
CAAGGGTTTATTGCTACCAAATACAACTACCGATCAAGAAATGCAACACA
TCAAGAATTCCTTACCTGACAAAGTGGTTGTTCAGCGTTGCGATGAGCGG
CTTTCAGCGCTTGGGAATTGTATTGCTACCAATGATTACGTATCGCTCGC
GCATACCGATTTAGACAGAGAAACGGAGGAAGTCATTGCGGATGTGCTCG
GTACTGAAGTTTTTCGCCAATCTATTGCAGGTGAGGTTTTGGTTGGATCG
TATTGCATATTTACCAACCAAGGTGGACTCTTACATCCCATGACTTCAAT
AGAAGATCAAGACGAACTCTCAAGCTTGCTGCAGATTCCTCTAGTAGCAG
GAACGGTCAATCGCGGTAGTGAAGTAGTTGGTTCAGGCATGGTTGTCAAC
GACTGGGCTGCATTCTGCGGCTCGGATACAACATCGACAGAAATTCAAGT
TATTGAGACTATCTTCAAACTCAAGGATGCTCAACCATCAGATCTTGTTT
CCAAAATCAAAGGGGCACTCATTGACAATCTTTCGTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:247294..248031-

>Gchil10010.t1 ID=Gchil10010.t1|Name=Gchil10010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00004442_pilon:247294..248031- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTTCGCTGTCACTTTGAGAACAGCAATGAGGTCGGCGTTTTCTC
TAAGCTCACCAACTCATATTGTCTTGTCGCCTCAGGTGCTTCAGAAAACT
TTTATTCAGTCTTTGAAGCAGAACTCGCTGATCATATTCCAATCGTTCAT
GCTTCAATAGCAGGCACCCGCATCATAGGTCGTCTCTGCGTTGGAAATAA
CAAGGGTTTATTGCTACCAAATACAACTACCGATCAAGAAATGCAACACA
TCAAGAATTCCTTACCTGACAAAGTGGTTGTTCAGCGTTGCGATGAGCGG
CTTTCAGCGCTTGGGAATTGTATTGCTACCAATGATTACGTATCGCTCGC
GCATACCGATTTAGACAGAGAAACGGAGGAAGTCATTGCGGATGTGCTCG
GTACTGAAGTTTTTCGCCAATCTATTGCAGGTGAGGTTTTGGTTGGATCG
TATTGCATATTTACCAACCAAGGTGGACTCTTACATCCCATGACTTCAAT
AGAAGATCAAGACGAACTCTCAAGCTTGCTGCAGATTCCTCTAGTAGCAG
GAACGGTCAATCGCGGTAGTGAAGTAGTTGGTTCAGGCATGGTTGTCAAC
GACTGGGCTGCATTCTGCGGCTCGGATACAACATCGACAGAAATTCAAGT
TATTGAGACTATCTTCAAACTCAAGGATGCTCAACCATCAGATCTTGTTT
CCAAAATCAAAGGGGCACTCATTGACAATCTTTCGTAG
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