Gchil10078.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10078.t1
Unique NameGchil10078.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:733232..734338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703990.1
Preferred nameKIN
PFAMsKin17_mid,zf-C2H2_jaz,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K13102,ko:K17260
KEGG Pathwayko04138,ko04530,map04138,map04530
GOsGO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016363,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0033554,GO:0034399,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1902969,GO:1903047
Evalue8.03e-68
EggNOG OGsKOG2837@1|root,KOG2837@2759|Eukaryota
DescriptionDNA replication
COG categoryA
BRITEko00000,ko00001,ko03041,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10078Gchil10078Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 733232..734338 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10078.t1.stop1Gchil10078.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 733232..733234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10078.t1.CDS1Gchil10078.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 733232..734338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10078.t1.exon1Gchil10078.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 733232..734338 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10078.t1.start1Gchil10078.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 734336..734338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10078.t1Gchil10078.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 733232..734338 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10078.t1 ID=Gchil10078.t1|Name=Gchil10078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MCEKQCRDENGFKCHTKSAGHQRQLTMFAESPSEYIGRFSETFRKEFLLV
LRQRYGTNFVHANTVYQEYIKDRDHVHMNATKWTTLTAFIKELGKEGHCR
VEDREDGWWVAYLAREHFEKERRAKEIRSHTLESEERAALVLREQVNHAK
NIGVTRKRHVDVTDSDAANATPVSITLSRKVGKRKVTDQKAPPGAFQSHF
FSRGDENASEAGKRGTHSGKWTGFEDAEPENATSEENELDGENAPPGVEG
EGAEVPWLHVDTLVKITNKDLANGGFLGKKGRVVKIIEDFGARVQLVDSD
TVLELDQDDLETVIPKPGGIVYLLRGTHRGKKAVVRSIDIDKFSVRVELL
DTNEELSGIEYEAVSRAA*
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spliced messenger RNA

>Gchil10078.t1 ID=Gchil10078.t1|Name=Gchil10078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:733232..734338- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGAAAAGCAATGTAGAGATGAAAATGGCTTCAAGTGTCACACAAA
AAGTGCCGGACATCAGCGTCAACTTACAATGTTTGCAGAAAGCCCATCAG
AGTACATTGGTCGGTTTTCTGAAACATTTCGAAAAGAGTTTTTGCTCGTA
CTTCGACAGAGGTACGGTACAAACTTTGTTCACGCGAACACTGTCTATCA
GGAGTATATCAAAGATCGAGATCATGTACATATGAATGCTACAAAGTGGA
CTACTCTCACCGCTTTTATAAAAGAATTGGGGAAGGAAGGTCACTGTCGC
GTGGAGGATAGAGAAGACGGTTGGTGGGTCGCGTACCTTGCGAGAGAGCA
CTTTGAAAAGGAAAGAAGGGCAAAAGAAATCCGTTCTCACACTCTAGAAA
GTGAAGAAAGAGCTGCTTTAGTTTTACGAGAGCAAGTCAATCACGCGAAG
AATATAGGAGTAACTCGAAAAAGACATGTCGATGTCACAGACTCCGACGC
TGCGAATGCGACGCCCGTAAGCATCACGTTGTCACGGAAAGTTGGAAAGC
GAAAAGTTACTGATCAGAAGGCTCCTCCCGGTGCCTTCCAATCTCATTTC
TTCTCGAGAGGCGATGAAAACGCATCAGAAGCGGGGAAAAGAGGAACACA
TTCTGGAAAATGGACGGGCTTTGAAGACGCAGAACCTGAGAATGCCACAT
CCGAAGAAAACGAGCTTGATGGCGAAAATGCACCCCCAGGCGTAGAAGGT
GAAGGAGCTGAAGTCCCATGGCTTCATGTGGACACCCTTGTCAAGATAAC
CAACAAAGACCTTGCGAACGGTGGGTTCCTGGGGAAAAAGGGACGGGTCG
TAAAGATCATAGAAGACTTTGGAGCGAGAGTGCAACTTGTAGATTCTGAT
ACAGTTCTTGAACTGGACCAAGACGACCTTGAGACCGTGATCCCTAAACC
AGGAGGCATAGTTTACTTGCTACGGGGTACGCATCGCGGAAAGAAAGCAG
TTGTGCGATCTATAGACATAGACAAATTCAGCGTTCGTGTTGAGCTTCTT
GACACCAATGAGGAGCTCTCAGGAATTGAGTACGAGGCGGTGTCCCGAGC
GGCTTGA
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protein sequence of Gchil10078.t1

>Gchil10078.t1 ID=Gchil10078.t1|Name=Gchil10078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MCEKQCRDENGFKCHTKSAGHQRQLTMFAESPSEYIGRFSETFRKEFLLV
LRQRYGTNFVHANTVYQEYIKDRDHVHMNATKWTTLTAFIKELGKEGHCR
VEDREDGWWVAYLAREHFEKERRAKEIRSHTLESEERAALVLREQVNHAK
NIGVTRKRHVDVTDSDAANATPVSITLSRKVGKRKVTDQKAPPGAFQSHF
FSRGDENASEAGKRGTHSGKWTGFEDAEPENATSEENELDGENAPPGVEG
EGAEVPWLHVDTLVKITNKDLANGGFLGKKGRVVKIIEDFGARVQLVDSD
TVLELDQDDLETVIPKPGGIVYLLRGTHRGKKAVVRSIDIDKFSVRVELL
DTNEELSGIEYEAVSRAA*
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mRNA from alignment at tig00004442_pilon:733232..734338-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10078.t1 ID=Gchil10078.t1|Name=Gchil10078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:733232..734338- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGAAAAGCAATGTAGAGATGAAAATGGCTTCAAGTGTCACACAAA
AAGTGCCGGACATCAGCGTCAACTTACAATGTTTGCAGAAAGCCCATCAG
AGTACATTGGTCGGTTTTCTGAAACATTTCGAAAAGAGTTTTTGCTCGTA
CTTCGACAGAGGTACGGTACAAACTTTGTTCACGCGAACACTGTCTATCA
GGAGTATATCAAAGATCGAGATCATGTACATATGAATGCTACAAAGTGGA
CTACTCTCACCGCTTTTATAAAAGAATTGGGGAAGGAAGGTCACTGTCGC
GTGGAGGATAGAGAAGACGGTTGGTGGGTCGCGTACCTTGCGAGAGAGCA
CTTTGAAAAGGAAAGAAGGGCAAAAGAAATCCGTTCTCACACTCTAGAAA
GTGAAGAAAGAGCTGCTTTAGTTTTACGAGAGCAAGTCAATCACGCGAAG
AATATAGGAGTAACTCGAAAAAGACATGTCGATGTCACAGACTCCGACGC
TGCGAATGCGACGCCCGTAAGCATCACGTTGTCACGGAAAGTTGGAAAGC
GAAAAGTTACTGATCAGAAGGCTCCTCCCGGTGCCTTCCAATCTCATTTC
TTCTCGAGAGGCGATGAAAACGCATCAGAAGCGGGGAAAAGAGGAACACA
TTCTGGAAAATGGACGGGCTTTGAAGACGCAGAACCTGAGAATGCCACAT
CCGAAGAAAACGAGCTTGATGGCGAAAATGCACCCCCAGGCGTAGAAGGT
GAAGGAGCTGAAGTCCCATGGCTTCATGTGGACACCCTTGTCAAGATAAC
CAACAAAGACCTTGCGAACGGTGGGTTCCTGGGGAAAAAGGGACGGGTCG
TAAAGATCATAGAAGACTTTGGAGCGAGAGTGCAACTTGTAGATTCTGAT
ACAGTTCTTGAACTGGACCAAGACGACCTTGAGACCGTGATCCCTAAACC
AGGAGGCATAGTTTACTTGCTACGGGGTACGCATCGCGGAAAGAAAGCAG
TTGTGCGATCTATAGACATAGACAAATTCAGCGTTCGTGTTGAGCTTCTT
GACACCAATGAGGAGCTCTCAGGAATTGAGTACGAGGCGGTGTCCCGAGC
GGCTTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:733232..734338-

>Gchil10078.t1 ID=Gchil10078.t1|Name=Gchil10078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:733232..734338- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGAAAAGCAATGTAGAGATGAAAATGGCTTCAAGTGTCACACAAA
AAGTGCCGGACATCAGCGTCAACTTACAATGTTTGCAGAAAGCCCATCAG
AGTACATTGGTCGGTTTTCTGAAACATTTCGAAAAGAGTTTTTGCTCGTA
CTTCGACAGAGGTACGGTACAAACTTTGTTCACGCGAACACTGTCTATCA
GGAGTATATCAAAGATCGAGATCATGTACATATGAATGCTACAAAGTGGA
CTACTCTCACCGCTTTTATAAAAGAATTGGGGAAGGAAGGTCACTGTCGC
GTGGAGGATAGAGAAGACGGTTGGTGGGTCGCGTACCTTGCGAGAGAGCA
CTTTGAAAAGGAAAGAAGGGCAAAAGAAATCCGTTCTCACACTCTAGAAA
GTGAAGAAAGAGCTGCTTTAGTTTTACGAGAGCAAGTCAATCACGCGAAG
AATATAGGAGTAACTCGAAAAAGACATGTCGATGTCACAGACTCCGACGC
TGCGAATGCGACGCCCGTAAGCATCACGTTGTCACGGAAAGTTGGAAAGC
GAAAAGTTACTGATCAGAAGGCTCCTCCCGGTGCCTTCCAATCTCATTTC
TTCTCGAGAGGCGATGAAAACGCATCAGAAGCGGGGAAAAGAGGAACACA
TTCTGGAAAATGGACGGGCTTTGAAGACGCAGAACCTGAGAATGCCACAT
CCGAAGAAAACGAGCTTGATGGCGAAAATGCACCCCCAGGCGTAGAAGGT
GAAGGAGCTGAAGTCCCATGGCTTCATGTGGACACCCTTGTCAAGATAAC
CAACAAAGACCTTGCGAACGGTGGGTTCCTGGGGAAAAAGGGACGGGTCG
TAAAGATCATAGAAGACTTTGGAGCGAGAGTGCAACTTGTAGATTCTGAT
ACAGTTCTTGAACTGGACCAAGACGACCTTGAGACCGTGATCCCTAAACC
AGGAGGCATAGTTTACTTGCTACGGGGTACGCATCGCGGAAAGAAAGCAG
TTGTGCGATCTATAGACATAGACAAATTCAGCGTTCGTGTTGAGCTTCTT
GACACCAATGAGGAGCTCTCAGGAATTGAGTACGAGGCGGTGTCCCGAGC
GGCTTGA
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