Gchil7119.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7119.t1
Unique Name	Gchil7119.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:273149..274063 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	93612.XP_008023873.1
Preferred name	CDC123
PFAMs	D123
Max annot lvl	4751\|Fungi
GOs	GO:0000166,GO:0000287,GO:0001732,GO:0002181,GO:0002183,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0007049,GO:0007050,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0017076,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045727,GO:0045786,GO:0045948,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905143,GO:2000112
Evalue	6.74e-30
EggNOG OGs	KOG2983@1\|root,KOG2983@2759\|Eukaryota,38FHE@33154\|Opisthokonta,3NV5R@4751\|Fungi,3QS7F@4890\|Ascomycota,1ZXW4@147541\|Dothideomycetes,4KCMR@92860\|Pleosporales
Description	D123
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7119	Gchil7119	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 273149..274063 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7119.t1.start1	Gchil7119.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 273149..273151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7119.t1.CDS1	Gchil7119.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 273149..274063 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7119.t1.exon1	Gchil7119.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 273149..274063 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7119.t1.stop1	Gchil7119.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 274061..274063 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7119.t1	Gchil7119.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 273149..274063 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:273149..274063+
coding sequence from alignment at tig00004441_pilon:273149..274063+

mRNA sequence

>Gchil7119.t1 ID=Gchil7119.t1|Name=Gchil7119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MSHPASACFAPNAWIPRFRRRTPKTRFVWLEPPILQSLLEGTVRTAIQER
VVEWSDGTRSDVSAETSAYLDLEASINACIDELGGAVCPKFDCKCPSDAT
WVNFHRSLKCTSADDVLIMFNSSERVMRTVDTENGCYLALRKWADLDDRM
EFRVFVRDEEVIAVSQRSETFFEYDEHQMDSIVEKITRFYDADIKGSFLE
SYVVDVYIERENVWIIDFDIWEAADALLYSWEELGDAHWMSSGRPQFRCA
LRYGVVPSTMYDGLPIELRRENGLNDLIATARQLFGEQNSFETVHSGGDD
DDWT*

spliced messenger RNA

>Gchil7119.t1 ID=Gchil7119.t1|Name=Gchil7119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004441_pilon:273149..274063+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATCCCGCATCCGCTTGTTTTGCACCGAATGCATGGATACCTCG
GTTTCGTCGTAGAACCCCAAAGACTCGTTTTGTCTGGCTTGAACCGCCTA
TCTTACAGTCTTTACTTGAAGGAACGGTGAGAACGGCGATTCAAGAAAGA
GTTGTCGAATGGTCTGACGGAACAAGATCCGACGTGTCCGCAGAAACATC
CGCATATCTTGATCTTGAAGCCTCCATCAATGCTTGCATTGACGAACTTG
GGGGTGCTGTGTGCCCAAAATTTGATTGCAAATGTCCTTCAGATGCAACG
TGGGTAAATTTCCACCGCTCTCTGAAATGTACAAGTGCAGATGATGTTCT
TATCATGTTCAATTCATCAGAACGTGTGATGCGTACCGTTGACACAGAAA
ATGGGTGCTACTTGGCCCTAAGAAAATGGGCCGATCTCGATGACCGCATG
GAATTTCGTGTGTTTGTCCGGGACGAAGAAGTGATTGCCGTTTCTCAGAG
ATCAGAGACATTTTTCGAGTACGATGAACATCAGATGGATTCTATCGTTG
AGAAGATCACTCGCTTTTACGATGCAGACATTAAAGGTTCGTTTCTCGAG
AGCTATGTCGTCGACGTTTACATTGAACGAGAGAATGTCTGGATTATTGA
CTTTGATATCTGGGAAGCTGCAGATGCGCTCTTGTACAGCTGGGAGGAAC
TGGGGGATGCGCACTGGATGTCTTCTGGAAGACCTCAATTTCGATGTGCT
CTGCGATACGGTGTAGTTCCGTCAACTATGTATGATGGGCTCCCAATCGA
ACTTCGACGTGAGAACGGACTGAACGATCTGATAGCGACGGCAAGACAGC
TTTTCGGAGAACAAAACTCATTCGAAACAGTACACAGCGGCGGAGATGAC
GATGATTGGACATGA

protein sequence of Gchil7119.t1

>Gchil7119.t1 ID=Gchil7119.t1|Name=Gchil7119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MSHPASACFAPNAWIPRFRRRTPKTRFVWLEPPILQSLLEGTVRTAIQER
VVEWSDGTRSDVSAETSAYLDLEASINACIDELGGAVCPKFDCKCPSDAT
WVNFHRSLKCTSADDVLIMFNSSERVMRTVDTENGCYLALRKWADLDDRM
EFRVFVRDEEVIAVSQRSETFFEYDEHQMDSIVEKITRFYDADIKGSFLE
SYVVDVYIERENVWIIDFDIWEAADALLYSWEELGDAHWMSSGRPQFRCA
LRYGVVPSTMYDGLPIELRRENGLNDLIATARQLFGEQNSFETVHSGGDD
DDWT*

mRNA from alignment at tig00004441_pilon:273149..274063+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7119.t1 ID=Gchil7119.t1|Name=Gchil7119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004441_pilon:273149..274063+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCATCCCGCATCCGCTTGTTTTGCACCGAATGCATGGATACCTCG
GTTTCGTCGTAGAACCCCAAAGACTCGTTTTGTCTGGCTTGAACCGCCTA
TCTTACAGTCTTTACTTGAAGGAACGGTGAGAACGGCGATTCAAGAAAGA
GTTGTCGAATGGTCTGACGGAACAAGATCCGACGTGTCCGCAGAAACATC
CGCATATCTTGATCTTGAAGCCTCCATCAATGCTTGCATTGACGAACTTG
GGGGTGCTGTGTGCCCAAAATTTGATTGCAAATGTCCTTCAGATGCAACG
TGGGTAAATTTCCACCGCTCTCTGAAATGTACAAGTGCAGATGATGTTCT
TATCATGTTCAATTCATCAGAACGTGTGATGCGTACCGTTGACACAGAAA
ATGGGTGCTACTTGGCCCTAAGAAAATGGGCCGATCTCGATGACCGCATG
GAATTTCGTGTGTTTGTCCGGGACGAAGAAGTGATTGCCGTTTCTCAGAG
ATCAGAGACATTTTTCGAGTACGATGAACATCAGATGGATTCTATCGTTG
AGAAGATCACTCGCTTTTACGATGCAGACATTAAAGGTTCGTTTCTCGAG
AGCTATGTCGTCGACGTTTACATTGAACGAGAGAATGTCTGGATTATTGA
CTTTGATATCTGGGAAGCTGCAGATGCGCTCTTGTACAGCTGGGAGGAAC
TGGGGGATGCGCACTGGATGTCTTCTGGAAGACCTCAATTTCGATGTGCT
CTGCGATACGGTGTAGTTCCGTCAACTATGTATGATGGGCTCCCAATCGA
ACTTCGACGTGAGAACGGACTGAACGATCTGATAGCGACGGCAAGACAGC
TTTTCGGAGAACAAAACTCATTCGAAACAGTACACAGCGGCGGAGATGAC
GATGATTGGACATGA

Coding sequence (CDS) from alignment at tig00004441_pilon:273149..274063+

>Gchil7119.t1 ID=Gchil7119.t1|Name=Gchil7119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00004441_pilon:273149..274063+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCATCCCGCATCCGCTTGTTTTGCACCGAATGCATGGATACCTCG
GTTTCGTCGTAGAACCCCAAAGACTCGTTTTGTCTGGCTTGAACCGCCTA
TCTTACAGTCTTTACTTGAAGGAACGGTGAGAACGGCGATTCAAGAAAGA
GTTGTCGAATGGTCTGACGGAACAAGATCCGACGTGTCCGCAGAAACATC
CGCATATCTTGATCTTGAAGCCTCCATCAATGCTTGCATTGACGAACTTG
GGGGTGCTGTGTGCCCAAAATTTGATTGCAAATGTCCTTCAGATGCAACG
TGGGTAAATTTCCACCGCTCTCTGAAATGTACAAGTGCAGATGATGTTCT
TATCATGTTCAATTCATCAGAACGTGTGATGCGTACCGTTGACACAGAAA
ATGGGTGCTACTTGGCCCTAAGAAAATGGGCCGATCTCGATGACCGCATG
GAATTTCGTGTGTTTGTCCGGGACGAAGAAGTGATTGCCGTTTCTCAGAG
ATCAGAGACATTTTTCGAGTACGATGAACATCAGATGGATTCTATCGTTG
AGAAGATCACTCGCTTTTACGATGCAGACATTAAAGGTTCGTTTCTCGAG
AGCTATGTCGTCGACGTTTACATTGAACGAGAGAATGTCTGGATTATTGA
CTTTGATATCTGGGAAGCTGCAGATGCGCTCTTGTACAGCTGGGAGGAAC
TGGGGGATGCGCACTGGATGTCTTCTGGAAGACCTCAATTTCGATGTGCT
CTGCGATACGGTGTAGTTCCGTCAACTATGTATGATGGGCTCCCAATCGA
ACTTCGACGTGAGAACGGACTGAACGATCTGATAGCGACGGCAAGACAGC
TTTTCGGAGAACAAAACTCATTCGAAACAGTACACAGCGGCGGAGATGAC
GATGATTGGACATGA