Gchil7097.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7097.t1
Unique NameGchil7097.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:103770..104873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708581.1
PFAMsCRAL_TRIO,CRAL_TRIO_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00684
KEGG koko:K00133
KEGG ReactionR02291
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
Evalue1.45e-30
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota
EC1.2.1.11
Descriptionintermembrane phospholipid transfer
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7097Gchil7097Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 103770..104873 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7097.t1.stop1Gchil7097.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 103770..103772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7097.t1.CDS1Gchil7097.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 103770..104873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7097.t1.exon1Gchil7097.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 103770..104873 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7097.t1.start1Gchil7097.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 104871..104873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7097.t1Gchil7097.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 103770..104873 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7097.t1 ID=Gchil7097.t1|Name=Gchil7097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=368bp
MRRFIPFSGAPSSSSEIVRSPSLSSNPRYQNNSHPELHVESSQEATAGAT
RPHSPSPRPHLPHVSLPHVPHVSVPHVSVPVLPSVRKLFHNSSSNGSHCE
PASTPLSELSTKIEQAFGPVGNPDPKCTSLMSDCLLIELKKSQQSRRRLL
VQFLRARQGNPHEAFDMILNTCKWRQGTNMQLYLSQSTYNMLQPSACFPI
HVISDPETCKQPVAYGLPRLLDKRKADRVLFQNALLSFLESIFFAHTYVL
DDIIIILDFREWSIRRNAPYRLVKDGIQTLQDFYPDRLGYVFLVNYPVTI
RAAYTVVSPIIDPGAKEKIVWASEDDPSATLRKYISPKSIPRFLGGELET
VFPAMWPDIASEFQNST*
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spliced messenger RNA

>Gchil7097.t1 ID=Gchil7097.t1|Name=Gchil7097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00004441_pilon:103770..104873- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGCTTTATACCCTTCTCTGGGGCCCCAAGCTCTTCTTCTGAGAT
TGTGCGTTCTCCCTCGCTGTCCTCTAACCCACGCTATCAAAACAACTCTC
ATCCTGAGCTTCACGTTGAATCCTCCCAGGAGGCAACCGCTGGTGCGACC
CGGCCTCATTCTCCATCACCACGACCCCATCTACCACACGTATCACTTCC
TCATGTGCCTCACGTTTCGGTCCCACACGTCAGCGTGCCTGTACTTCCAT
CCGTTCGCAAGCTTTTCCATAACTCTTCATCGAATGGATCTCATTGCGAA
CCTGCATCAACGCCCCTGAGTGAGCTTAGCACCAAGATTGAACAGGCTTT
CGGACCAGTTGGCAATCCTGACCCAAAGTGCACCTCATTGATGAGCGATT
GCCTTCTCATTGAGCTCAAGAAAAGCCAACAAAGTCGTCGCCGTCTCCTT
GTACAGTTTCTGCGTGCGCGGCAAGGAAACCCCCATGAAGCTTTCGATAT
GATACTCAATACTTGCAAATGGCGCCAGGGAACGAATATGCAATTGTACC
TTTCCCAAAGCACATACAATATGCTCCAACCCAGCGCTTGCTTCCCGATA
CACGTAATATCAGATCCCGAAACATGCAAACAGCCTGTCGCTTACGGCCT
CCCGCGCCTCCTCGACAAGAGAAAAGCTGATCGCGTTCTGTTTCAGAATG
CTTTACTTTCGTTTTTGGAGTCCATATTTTTCGCCCACACATATGTCTTG
GATGATATAATCATCATCCTAGACTTTCGCGAATGGTCCATACGCAGGAA
TGCTCCATACCGTCTCGTGAAAGACGGTATTCAGACATTACAAGACTTCT
ACCCAGACCGACTCGGTTACGTTTTCCTCGTCAACTATCCAGTCACCATT
AGAGCAGCGTACACTGTTGTAAGCCCAATCATAGATCCTGGAGCGAAGGA
GAAAATTGTATGGGCTTCAGAGGATGACCCCAGTGCTACTCTAAGAAAGT
ACATCTCTCCGAAATCCATTCCCAGGTTTCTTGGTGGTGAACTAGAAACT
GTTTTCCCGGCTATGTGGCCAGACATCGCGTCCGAGTTTCAGAATAGCAC
TTGA
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protein sequence of Gchil7097.t1

>Gchil7097.t1 ID=Gchil7097.t1|Name=Gchil7097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=368bp
MRRFIPFSGAPSSSSEIVRSPSLSSNPRYQNNSHPELHVESSQEATAGAT
RPHSPSPRPHLPHVSLPHVPHVSVPHVSVPVLPSVRKLFHNSSSNGSHCE
PASTPLSELSTKIEQAFGPVGNPDPKCTSLMSDCLLIELKKSQQSRRRLL
VQFLRARQGNPHEAFDMILNTCKWRQGTNMQLYLSQSTYNMLQPSACFPI
HVISDPETCKQPVAYGLPRLLDKRKADRVLFQNALLSFLESIFFAHTYVL
DDIIIILDFREWSIRRNAPYRLVKDGIQTLQDFYPDRLGYVFLVNYPVTI
RAAYTVVSPIIDPGAKEKIVWASEDDPSATLRKYISPKSIPRFLGGELET
VFPAMWPDIASEFQNST*
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mRNA from alignment at tig00004441_pilon:103770..104873-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7097.t1 ID=Gchil7097.t1|Name=Gchil7097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00004441_pilon:103770..104873- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCTTTATACCCTTCTCTGGGGCCCCAAGCTCTTCTTCTGAGAT
TGTGCGTTCTCCCTCGCTGTCCTCTAACCCACGCTATCAAAACAACTCTC
ATCCTGAGCTTCACGTTGAATCCTCCCAGGAGGCAACCGCTGGTGCGACC
CGGCCTCATTCTCCATCACCACGACCCCATCTACCACACGTATCACTTCC
TCATGTGCCTCACGTTTCGGTCCCACACGTCAGCGTGCCTGTACTTCCAT
CCGTTCGCAAGCTTTTCCATAACTCTTCATCGAATGGATCTCATTGCGAA
CCTGCATCAACGCCCCTGAGTGAGCTTAGCACCAAGATTGAACAGGCTTT
CGGACCAGTTGGCAATCCTGACCCAAAGTGCACCTCATTGATGAGCGATT
GCCTTCTCATTGAGCTCAAGAAAAGCCAACAAAGTCGTCGCCGTCTCCTT
GTACAGTTTCTGCGTGCGCGGCAAGGAAACCCCCATGAAGCTTTCGATAT
GATACTCAATACTTGCAAATGGCGCCAGGGAACGAATATGCAATTGTACC
TTTCCCAAAGCACATACAATATGCTCCAACCCAGCGCTTGCTTCCCGATA
CACGTAATATCAGATCCCGAAACATGCAAACAGCCTGTCGCTTACGGCCT
CCCGCGCCTCCTCGACAAGAGAAAAGCTGATCGCGTTCTGTTTCAGAATG
CTTTACTTTCGTTTTTGGAGTCCATATTTTTCGCCCACACATATGTCTTG
GATGATATAATCATCATCCTAGACTTTCGCGAATGGTCCATACGCAGGAA
TGCTCCATACCGTCTCGTGAAAGACGGTATTCAGACATTACAAGACTTCT
ACCCAGACCGACTCGGTTACGTTTTCCTCGTCAACTATCCAGTCACCATT
AGAGCAGCGTACACTGTTGTAAGCCCAATCATAGATCCTGGAGCGAAGGA
GAAAATTGTATGGGCTTCAGAGGATGACCCCAGTGCTACTCTAAGAAAGT
ACATCTCTCCGAAATCCATTCCCAGGTTTCTTGGTGGTGAACTAGAAACT
GTTTTCCCGGCTATGTGGCCAGACATCGCGTCCGAGTTTCAGAATAGCAC
TTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:103770..104873-

>Gchil7097.t1 ID=Gchil7097.t1|Name=Gchil7097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00004441_pilon:103770..104873- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGCTTTATACCCTTCTCTGGGGCCCCAAGCTCTTCTTCTGAGAT
TGTGCGTTCTCCCTCGCTGTCCTCTAACCCACGCTATCAAAACAACTCTC
ATCCTGAGCTTCACGTTGAATCCTCCCAGGAGGCAACCGCTGGTGCGACC
CGGCCTCATTCTCCATCACCACGACCCCATCTACCACACGTATCACTTCC
TCATGTGCCTCACGTTTCGGTCCCACACGTCAGCGTGCCTGTACTTCCAT
CCGTTCGCAAGCTTTTCCATAACTCTTCATCGAATGGATCTCATTGCGAA
CCTGCATCAACGCCCCTGAGTGAGCTTAGCACCAAGATTGAACAGGCTTT
CGGACCAGTTGGCAATCCTGACCCAAAGTGCACCTCATTGATGAGCGATT
GCCTTCTCATTGAGCTCAAGAAAAGCCAACAAAGTCGTCGCCGTCTCCTT
GTACAGTTTCTGCGTGCGCGGCAAGGAAACCCCCATGAAGCTTTCGATAT
GATACTCAATACTTGCAAATGGCGCCAGGGAACGAATATGCAATTGTACC
TTTCCCAAAGCACATACAATATGCTCCAACCCAGCGCTTGCTTCCCGATA
CACGTAATATCAGATCCCGAAACATGCAAACAGCCTGTCGCTTACGGCCT
CCCGCGCCTCCTCGACAAGAGAAAAGCTGATCGCGTTCTGTTTCAGAATG
CTTTACTTTCGTTTTTGGAGTCCATATTTTTCGCCCACACATATGTCTTG
GATGATATAATCATCATCCTAGACTTTCGCGAATGGTCCATACGCAGGAA
TGCTCCATACCGTCTCGTGAAAGACGGTATTCAGACATTACAAGACTTCT
ACCCAGACCGACTCGGTTACGTTTTCCTCGTCAACTATCCAGTCACCATT
AGAGCAGCGTACACTGTTGTAAGCCCAATCATAGATCCTGGAGCGAAGGA
GAAAATTGTATGGGCTTCAGAGGATGACCCCAGTGCTACTCTAAGAAAGT
ACATCTCTCCGAAATCCATTCCCAGGTTTCTTGGTGGTGAACTAGAAACT
GTTTTCCCGGCTATGTGGCCAGACATCGCGTCCGAGTTTCAGAATAGCAC
TTGA
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