Gchil7253.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7253.t1
Unique NameGchil7253.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length629
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:872909..874795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10041652
PFAMsNramp
Max annot lvl35493|Streptophyta
KEGG koko:K03322,ko:K09775,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2,2.A.55.2.6,2.A.55.3
KEGG Pathwayko04142,ko04216,ko04978,map04142,map04216,map04978
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006828,GO:0008150,GO:0008324,GO:0015075,GO:0015086,GO:0015318,GO:0015691,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0034755,GO:0042592,GO:0044464,GO:0046873,GO:0046915,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070574,GO:0070838,GO:0071421,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771
Evalue2.08e-69
EggNOG OGsCOG1914@1|root,KOG1291@2759|Eukaryota,37I3K@33090|Viridiplantae,3G9ZW@35493|Streptophyta,4JJWR@91835|fabids
DescriptionMetal transporter
COG categoryP
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7253Gchil7253Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 872909..874795 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7253.t1.stop1Gchil7253.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 872909..872911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7253.t1.CDS1Gchil7253.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 872909..874795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7253.t1.exon1Gchil7253.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 872909..874795 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7253.t1.start1Gchil7253.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 874793..874795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7253.t1Gchil7253.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 872909..874795 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7253.t1 ID=Gchil7253.t1|Name=Gchil7253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=629bp
MEDTGVMIGGGGVVSWQVVDLGRCRAHVCVAHLWRKIWRPLKRVRLTYTG
KMQNSKMHMHTHFVIVLRAVAESLCAVTCVVRRRRCEQCVMTSSEQDGAA
QPRSSPAGCRRHPACAGQPCRSSLGSSLSAFVSSFGIPCLIAVAAIDPGN
LELDLQAGHALRYSLIWVILFSSVLGWILQSLVAHLTICSRKPLAALLAH
VYEHDRLLSISLFVVAEVSVIAFDIAEVVGTAIALQLLFQWPLWVGIILS
GLDTMLVLFLQRSGLNRVEAVIEFSLLLLAFCLFYEFVLTRPDIFSIVKG
SVVPDLGPDPKQGAILGVGVLGSVVMAHNLFLHSWLVNDRNKQSELLDEY
PSRIPSGTRYLRQTCRYATLEAGAIFIATYLINTCVVAITASLPEKSLRS
ISQLGLQDAGAFLESIVGSKFASTAWAVALLCSGHAATVTGALASQAVCE
GFLNFQGRRTSIVILASRALAILPAMAAALVAGESSANKLVVLSQVILSL
ALPFAVIPMFKLLIHVDRISHNRVIDKRMLTAGFVSFAFMIAANLYIFYD
MVNELNNLFGCLVAFSVCLVGLFSLFLMAKLIITPVSLTQVSMETDWIRE
TSETRPLLVNTEADNDANAVKHGPYQIQ*
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spliced messenger RNA

>Gchil7253.t1 ID=Gchil7253.t1|Name=Gchil7253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004441_pilon:872909..874795- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATACGGGCGTCATGATTGGCGGCGGTGGAGTGGTGTCGTGGCA
GGTGGTTGATCTCGGGCGATGTCGTGCACACGTGTGTGTGGCGCACCTCT
GGCGCAAAATCTGGCGGCCGTTGAAGCGCGTGCGCCTTACTTACACCGGC
AAGATGCAAAATTCTAAGATGCACATGCACACACACTTTGTAATTGTGTT
GAGAGCCGTGGCCGAAAGCCTGTGTGCTGTCACCTGCGTCGTGCGTCGAC
GCCGTTGCGAGCAGTGTGTGATGACGTCGTCCGAACAAGACGGAGCGGCG
CAGCCGCGATCGAGCCCCGCGGGATGCCGTCGTCACCCGGCTTGCGCTGG
TCAGCCATGTCGCTCCAGCCTAGGCTCATCGCTCTCCGCCTTCGTTTCCT
CCTTCGGCATCCCCTGTCTCATCGCTGTCGCTGCCATCGACCCCGGCAAC
CTCGAGCTCGACCTGCAGGCCGGTCATGCTCTGCGCTACTCACTCATATG
GGTCATTTTGTTTTCAAGTGTACTGGGATGGATTTTGCAGTCCCTCGTCG
CCCATCTCACCATTTGCTCGCGCAAGCCGCTTGCCGCCCTTCTAGCTCAC
GTGTACGAGCACGACCGCCTACTGTCCATCTCACTGTTCGTTGTGGCTGA
GGTTTCTGTCATCGCATTCGACATTGCTGAGGTTGTCGGCACAGCCATTG
CCCTGCAGCTTTTGTTTCAATGGCCGCTGTGGGTCGGCATAATCTTGTCC
GGTCTGGACACCATGTTGGTTTTGTTCCTCCAACGAAGCGGTCTCAACCG
CGTCGAAGCTGTTATCGAGTTTTCACTGCTTTTGCTTGCCTTCTGCCTCT
TTTATGAGTTTGTTCTTACTCGCCCGGACATTTTTTCTATCGTCAAGGGT
TCTGTTGTGCCCGACCTGGGGCCAGATCCCAAACAGGGTGCCATACTCGG
CGTTGGAGTGCTCGGAAGCGTTGTGATGGCACACAACCTTTTCCTTCACA
GCTGGCTGGTGAATGATCGAAACAAGCAAAGTGAACTGCTGGACGAGTAC
CCCTCTCGAATCCCCAGTGGCACACGCTATTTGCGACAGACCTGCCGCTA
CGCTACCTTGGAAGCTGGTGCCATTTTTATCGCTACTTATCTCATTAACA
CGTGCGTCGTCGCTATCACTGCGTCTCTGCCTGAGAAAAGTTTGCGCTCC
ATTTCTCAATTGGGGCTTCAAGACGCCGGCGCCTTTCTTGAATCCATAGT
AGGATCAAAGTTTGCATCTACGGCATGGGCAGTTGCTTTGCTGTGCAGCG
GTCACGCTGCCACCGTCACTGGCGCACTGGCGAGCCAAGCCGTATGTGAA
GGATTTTTGAACTTTCAAGGTCGTCGAACATCCATTGTTATCCTTGCCAG
CCGTGCCTTGGCCATCTTGCCTGCCATGGCTGCCGCTCTTGTGGCGGGCG
AAAGTAGTGCTAACAAGCTTGTTGTGCTTTCTCAGGTCATTTTATCTCTT
GCACTCCCATTTGCTGTCATACCCATGTTCAAGCTTTTGATTCACGTCGA
CCGAATCTCCCACAATCGCGTCATTGACAAACGGATGTTGACAGCAGGCT
TTGTGTCGTTTGCATTCATGATTGCTGCAAATTTGTACATTTTTTATGAT
ATGGTGAATGAGCTCAACAACCTTTTTGGGTGCTTGGTGGCTTTCAGCGT
TTGCCTTGTTGGATTGTTCTCTCTCTTTTTGATGGCAAAGCTTATAATAA
CTCCCGTAAGTCTAACTCAAGTATCAATGGAAACTGACTGGATTCGGGAA
ACAAGTGAAACAAGGCCATTGCTTGTTAACACCGAAGCCGATAACGATGC
TAATGCCGTGAAACATGGACCCTACCAAATTCAATAG
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protein sequence of Gchil7253.t1

>Gchil7253.t1 ID=Gchil7253.t1|Name=Gchil7253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=629bp
MEDTGVMIGGGGVVSWQVVDLGRCRAHVCVAHLWRKIWRPLKRVRLTYTG
KMQNSKMHMHTHFVIVLRAVAESLCAVTCVVRRRRCEQCVMTSSEQDGAA
QPRSSPAGCRRHPACAGQPCRSSLGSSLSAFVSSFGIPCLIAVAAIDPGN
LELDLQAGHALRYSLIWVILFSSVLGWILQSLVAHLTICSRKPLAALLAH
VYEHDRLLSISLFVVAEVSVIAFDIAEVVGTAIALQLLFQWPLWVGIILS
GLDTMLVLFLQRSGLNRVEAVIEFSLLLLAFCLFYEFVLTRPDIFSIVKG
SVVPDLGPDPKQGAILGVGVLGSVVMAHNLFLHSWLVNDRNKQSELLDEY
PSRIPSGTRYLRQTCRYATLEAGAIFIATYLINTCVVAITASLPEKSLRS
ISQLGLQDAGAFLESIVGSKFASTAWAVALLCSGHAATVTGALASQAVCE
GFLNFQGRRTSIVILASRALAILPAMAAALVAGESSANKLVVLSQVILSL
ALPFAVIPMFKLLIHVDRISHNRVIDKRMLTAGFVSFAFMIAANLYIFYD
MVNELNNLFGCLVAFSVCLVGLFSLFLMAKLIITPVSLTQVSMETDWIRE
TSETRPLLVNTEADNDANAVKHGPYQIQ*
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mRNA from alignment at tig00004441_pilon:872909..874795-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7253.t1 ID=Gchil7253.t1|Name=Gchil7253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004441_pilon:872909..874795- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGATACGGGCGTCATGATTGGCGGCGGTGGAGTGGTGTCGTGGCA
GGTGGTTGATCTCGGGCGATGTCGTGCACACGTGTGTGTGGCGCACCTCT
GGCGCAAAATCTGGCGGCCGTTGAAGCGCGTGCGCCTTACTTACACCGGC
AAGATGCAAAATTCTAAGATGCACATGCACACACACTTTGTAATTGTGTT
GAGAGCCGTGGCCGAAAGCCTGTGTGCTGTCACCTGCGTCGTGCGTCGAC
GCCGTTGCGAGCAGTGTGTGATGACGTCGTCCGAACAAGACGGAGCGGCG
CAGCCGCGATCGAGCCCCGCGGGATGCCGTCGTCACCCGGCTTGCGCTGG
TCAGCCATGTCGCTCCAGCCTAGGCTCATCGCTCTCCGCCTTCGTTTCCT
CCTTCGGCATCCCCTGTCTCATCGCTGTCGCTGCCATCGACCCCGGCAAC
CTCGAGCTCGACCTGCAGGCCGGTCATGCTCTGCGCTACTCACTCATATG
GGTCATTTTGTTTTCAAGTGTACTGGGATGGATTTTGCAGTCCCTCGTCG
CCCATCTCACCATTTGCTCGCGCAAGCCGCTTGCCGCCCTTCTAGCTCAC
GTGTACGAGCACGACCGCCTACTGTCCATCTCACTGTTCGTTGTGGCTGA
GGTTTCTGTCATCGCATTCGACATTGCTGAGGTTGTCGGCACAGCCATTG
CCCTGCAGCTTTTGTTTCAATGGCCGCTGTGGGTCGGCATAATCTTGTCC
GGTCTGGACACCATGTTGGTTTTGTTCCTCCAACGAAGCGGTCTCAACCG
CGTCGAAGCTGTTATCGAGTTTTCACTGCTTTTGCTTGCCTTCTGCCTCT
TTTATGAGTTTGTTCTTACTCGCCCGGACATTTTTTCTATCGTCAAGGGT
TCTGTTGTGCCCGACCTGGGGCCAGATCCCAAACAGGGTGCCATACTCGG
CGTTGGAGTGCTCGGAAGCGTTGTGATGGCACACAACCTTTTCCTTCACA
GCTGGCTGGTGAATGATCGAAACAAGCAAAGTGAACTGCTGGACGAGTAC
CCCTCTCGAATCCCCAGTGGCACACGCTATTTGCGACAGACCTGCCGCTA
CGCTACCTTGGAAGCTGGTGCCATTTTTATCGCTACTTATCTCATTAACA
CGTGCGTCGTCGCTATCACTGCGTCTCTGCCTGAGAAAAGTTTGCGCTCC
ATTTCTCAATTGGGGCTTCAAGACGCCGGCGCCTTTCTTGAATCCATAGT
AGGATCAAAGTTTGCATCTACGGCATGGGCAGTTGCTTTGCTGTGCAGCG
GTCACGCTGCCACCGTCACTGGCGCACTGGCGAGCCAAGCCGTATGTGAA
GGATTTTTGAACTTTCAAGGTCGTCGAACATCCATTGTTATCCTTGCCAG
CCGTGCCTTGGCCATCTTGCCTGCCATGGCTGCCGCTCTTGTGGCGGGCG
AAAGTAGTGCTAACAAGCTTGTTGTGCTTTCTCAGGTCATTTTATCTCTT
GCACTCCCATTTGCTGTCATACCCATGTTCAAGCTTTTGATTCACGTCGA
CCGAATCTCCCACAATCGCGTCATTGACAAACGGATGTTGACAGCAGGCT
TTGTGTCGTTTGCATTCATGATTGCTGCAAATTTGTACATTTTTTATGAT
ATGGTGAATGAGCTCAACAACCTTTTTGGGTGCTTGGTGGCTTTCAGCGT
TTGCCTTGTTGGATTGTTCTCTCTCTTTTTGATGGCAAAGCTTATAATAA
CTCCCGTAAGTCTAACTCAAGTATCAATGGAAACTGACTGGATTCGGGAA
ACAAGTGAAACAAGGCCATTGCTTGTTAACACCGAAGCCGATAACGATGC
TAATGCCGTGAAACATGGACCCTACCAAATTCAATAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:872909..874795-

>Gchil7253.t1 ID=Gchil7253.t1|Name=Gchil7253.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00004441_pilon:872909..874795- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGATACGGGCGTCATGATTGGCGGCGGTGGAGTGGTGTCGTGGCA
GGTGGTTGATCTCGGGCGATGTCGTGCACACGTGTGTGTGGCGCACCTCT
GGCGCAAAATCTGGCGGCCGTTGAAGCGCGTGCGCCTTACTTACACCGGC
AAGATGCAAAATTCTAAGATGCACATGCACACACACTTTGTAATTGTGTT
GAGAGCCGTGGCCGAAAGCCTGTGTGCTGTCACCTGCGTCGTGCGTCGAC
GCCGTTGCGAGCAGTGTGTGATGACGTCGTCCGAACAAGACGGAGCGGCG
CAGCCGCGATCGAGCCCCGCGGGATGCCGTCGTCACCCGGCTTGCGCTGG
TCAGCCATGTCGCTCCAGCCTAGGCTCATCGCTCTCCGCCTTCGTTTCCT
CCTTCGGCATCCCCTGTCTCATCGCTGTCGCTGCCATCGACCCCGGCAAC
CTCGAGCTCGACCTGCAGGCCGGTCATGCTCTGCGCTACTCACTCATATG
GGTCATTTTGTTTTCAAGTGTACTGGGATGGATTTTGCAGTCCCTCGTCG
CCCATCTCACCATTTGCTCGCGCAAGCCGCTTGCCGCCCTTCTAGCTCAC
GTGTACGAGCACGACCGCCTACTGTCCATCTCACTGTTCGTTGTGGCTGA
GGTTTCTGTCATCGCATTCGACATTGCTGAGGTTGTCGGCACAGCCATTG
CCCTGCAGCTTTTGTTTCAATGGCCGCTGTGGGTCGGCATAATCTTGTCC
GGTCTGGACACCATGTTGGTTTTGTTCCTCCAACGAAGCGGTCTCAACCG
CGTCGAAGCTGTTATCGAGTTTTCACTGCTTTTGCTTGCCTTCTGCCTCT
TTTATGAGTTTGTTCTTACTCGCCCGGACATTTTTTCTATCGTCAAGGGT
TCTGTTGTGCCCGACCTGGGGCCAGATCCCAAACAGGGTGCCATACTCGG
CGTTGGAGTGCTCGGAAGCGTTGTGATGGCACACAACCTTTTCCTTCACA
GCTGGCTGGTGAATGATCGAAACAAGCAAAGTGAACTGCTGGACGAGTAC
CCCTCTCGAATCCCCAGTGGCACACGCTATTTGCGACAGACCTGCCGCTA
CGCTACCTTGGAAGCTGGTGCCATTTTTATCGCTACTTATCTCATTAACA
CGTGCGTCGTCGCTATCACTGCGTCTCTGCCTGAGAAAAGTTTGCGCTCC
ATTTCTCAATTGGGGCTTCAAGACGCCGGCGCCTTTCTTGAATCCATAGT
AGGATCAAAGTTTGCATCTACGGCATGGGCAGTTGCTTTGCTGTGCAGCG
GTCACGCTGCCACCGTCACTGGCGCACTGGCGAGCCAAGCCGTATGTGAA
GGATTTTTGAACTTTCAAGGTCGTCGAACATCCATTGTTATCCTTGCCAG
CCGTGCCTTGGCCATCTTGCCTGCCATGGCTGCCGCTCTTGTGGCGGGCG
AAAGTAGTGCTAACAAGCTTGTTGTGCTTTCTCAGGTCATTTTATCTCTT
GCACTCCCATTTGCTGTCATACCCATGTTCAAGCTTTTGATTCACGTCGA
CCGAATCTCCCACAATCGCGTCATTGACAAACGGATGTTGACAGCAGGCT
TTGTGTCGTTTGCATTCATGATTGCTGCAAATTTGTACATTTTTTATGAT
ATGGTGAATGAGCTCAACAACCTTTTTGGGTGCTTGGTGGCTTTCAGCGT
TTGCCTTGTTGGATTGTTCTCTCTCTTTTTGATGGCAAAGCTTATAATAA
CTCCCGTAAGTCTAACTCAAGTATCAATGGAAACTGACTGGATTCGGGAA
ACAAGTGAAACAAGGCCATTGCTTGTTAACACCGAAGCCGATAACGATGC
TAATGCCGTGAAACATGGACCCTACCAAATTCAATAG
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