Gchil7108.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7108.t1
Unique NameGchil7108.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:188011..189670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S298_28V6.1
PFAMsCitMHS
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006848,GO:0006950,GO:0006970,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009941,GO:0015075,GO:0015291,GO:0015297,GO:0015318,GO:0015672,GO:0015711,GO:0015718,GO:0015849,GO:0022804,GO:0022857,GO:0030001,GO:0031967,GO:0031975,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050833,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098656,GO:1901475,GO:1903825,GO:1905039
Evalue1.51e-176
EggNOG OGsCOG1055@1|root,2QQAH@2759|Eukaryota,37QGQ@33090|Viridiplantae,3G9KX@35493|Streptophyta
Descriptionsodium ion transport
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7108Gchil7108Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 188011..189670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1Gchil7108.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 188011..189670 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1.stop1Gchil7108.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 188011..188013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1.CDS1Gchil7108.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 188011..188152 -
Gchil7108.t1.CDS2Gchil7108.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 188256..189670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1.exon1Gchil7108.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 188011..188152 -
Gchil7108.t1.exon2Gchil7108.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 188256..189670 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1.intron1Gchil7108.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 188153..188255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7108.t1.start1Gchil7108.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 189668..189670 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7108.t1 ID=Gchil7108.t1|Name=Gchil7108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp
MVAPERQTEKGKPSSNGAPSLAPLEERMPDIVLSEVDRPTPEMIHPDPAK
AAVDCETSKSDSARAAGVGIFVTVVAALLQHTWVLEHRDIAMSGIFVLGY
LGIILEETLAFDKTGVALLMGVGVWTVLMTGAGDAEAAHQVKELLSDQVA
EISQILFFLIGAMTIVEIIDAHRGFKVVTDYITTNKRKVLLWTIGILTFF
VSAVLDNLTSTIVIVSLLRKLVADPRERWLFGAAVVIAANAGGAWTPIGD
VTTTQLWVHGNISALKTMADLFIPSFVSMVVSLAMFTPLVGNGEFERPND
DQSQLAPRAPLVFWSGLAALISVPIFKTVTGLPPYLGMLSGLGALWVMTD
VLHAGEDRESLRGLAAIKRIDTSGVLFFLGILLAVGGLESAGILETLARF
LDSHVASREIIATAIGLLSSVVDNVPLVAATMGMYSLDQIPADGLLWQLI
AFCAGTGGSILIIGSAAGVAFMGMEKVEFGWYAKKASIPTLAGFFAGIGT
YLALHSLNLPAIASTFGF*
back to top

spliced messenger RNA

>Gchil7108.t1 ID=Gchil7108.t1|Name=Gchil7108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00004441_pilon:188011..189670- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCTCCAGAGCGTCAAACGGAGAAAGGCAAACCATCATCTAATGG
CGCGCCGTCTCTTGCCCCGTTGGAAGAGCGCATGCCAGACATTGTACTTT
CGGAAGTTGACCGACCAACCCCTGAGATGATCCATCCTGACCCAGCGAAG
GCCGCCGTTGACTGCGAAACAAGTAAGTCTGACAGTGCGCGCGCGGCGGG
AGTGGGTATCTTCGTAACAGTAGTCGCCGCTCTTCTACAACATACATGGG
TTCTAGAGCATCGTGATATTGCCATGAGTGGAATTTTCGTTCTTGGCTAC
CTTGGTATTATTCTCGAAGAGACTCTTGCGTTTGACAAGACTGGAGTCGC
ACTTCTCATGGGTGTGGGTGTTTGGACAGTCCTCATGACTGGTGCAGGTG
ATGCGGAAGCTGCCCATCAAGTTAAGGAGCTGCTATCCGATCAAGTCGCT
GAAATTTCCCAAATCCTTTTCTTTCTTATTGGAGCCATGACCATCGTCGA
GATCATAGATGCTCACCGTGGATTTAAGGTTGTCACGGATTACATCACAA
CAAACAAGCGCAAGGTACTTCTGTGGACTATCGGCATTCTCACTTTCTTC
GTTAGTGCCGTCCTTGACAATCTCACTTCCACTATCGTTATCGTATCGCT
TCTTCGGAAACTCGTGGCAGACCCAAGGGAAAGGTGGCTGTTTGGTGCTG
CTGTGGTGATTGCTGCCAATGCTGGCGGAGCATGGACTCCGATTGGGGAC
GTGACTACGACCCAGCTGTGGGTTCATGGCAATATCTCTGCGCTCAAAAC
GATGGCAGATCTTTTCATTCCTTCTTTTGTATCCATGGTCGTATCTCTTG
CGATGTTCACTCCTTTGGTCGGAAACGGGGAGTTTGAACGGCCCAACGAC
GATCAATCTCAACTTGCACCTCGTGCTCCACTGGTATTCTGGAGCGGGCT
TGCTGCTCTAATCTCTGTACCAATTTTTAAGACCGTAACCGGGCTTCCCC
CTTACCTTGGCATGCTTTCAGGGCTTGGAGCACTATGGGTAATGACTGAT
GTGTTGCATGCGGGAGAAGATAGAGAGTCTCTACGCGGCCTGGCGGCTAT
CAAACGAATCGATACATCAGGGGTCTTGTTCTTCCTTGGAATTCTCCTTG
CTGTCGGTGGACTTGAATCAGCTGGAATTCTGGAAACGTTGGCTCGTTTT
CTCGACAGTCATGTTGCAAGTCGAGAGATAATCGCAACCGCCATCGGTTT
GCTTAGCTCCGTCGTGGACAATGTACCTCTGGTAGCGGCAACAATGGGCA
TGTATTCGCTGGATCAAATTCCAGCTGATGGGCTGCTTTGGCAGCTTATC
GCCTTCTGTGCTGGTACGGGTGGTAGCATCTTAATCATCGGTAGCGCTGC
CGGTGTCGCCTTCATGGGAATGGAAAAGGTAGAGTTCGGATGGTACGCGA
AGAAGGCAAGTATTCCAACCCTTGCTGGCTTCTTTGCTGGCATTGGAACT
TACCTCGCGTTGCACTCGCTCAATCTACCGGCAATTGCCTCGACCTTCGG
GTTTTGA
back to top

protein sequence of Gchil7108.t1

>Gchil7108.t1 ID=Gchil7108.t1|Name=Gchil7108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=519bp
MVAPERQTEKGKPSSNGAPSLAPLEERMPDIVLSEVDRPTPEMIHPDPAK
AAVDCETSKSDSARAAGVGIFVTVVAALLQHTWVLEHRDIAMSGIFVLGY
LGIILEETLAFDKTGVALLMGVGVWTVLMTGAGDAEAAHQVKELLSDQVA
EISQILFFLIGAMTIVEIIDAHRGFKVVTDYITTNKRKVLLWTIGILTFF
VSAVLDNLTSTIVIVSLLRKLVADPRERWLFGAAVVIAANAGGAWTPIGD
VTTTQLWVHGNISALKTMADLFIPSFVSMVVSLAMFTPLVGNGEFERPND
DQSQLAPRAPLVFWSGLAALISVPIFKTVTGLPPYLGMLSGLGALWVMTD
VLHAGEDRESLRGLAAIKRIDTSGVLFFLGILLAVGGLESAGILETLARF
LDSHVASREIIATAIGLLSSVVDNVPLVAATMGMYSLDQIPADGLLWQLI
AFCAGTGGSILIIGSAAGVAFMGMEKVEFGWYAKKASIPTLAGFFAGIGT
YLALHSLNLPAIASTFGF*
back to top

mRNA from alignment at tig00004441_pilon:188011..189670-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7108.t1 ID=Gchil7108.t1|Name=Gchil7108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1660bp|location=Sequence derived from alignment at tig00004441_pilon:188011..189670- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCTCCAGAGCGTCAAACGGAGAAAGGCAAACCATCATCTAATGG
CGCGCCGTCTCTTGCCCCGTTGGAAGAGCGCATGCCAGACATTGTACTTT
CGGAAGTTGACCGACCAACCCCTGAGATGATCCATCCTGACCCAGCGAAG
GCCGCCGTTGACTGCGAAACAAGTAAGTCTGACAGTGCGCGCGCGGCGGG
AGTGGGTATCTTCGTAACAGTAGTCGCCGCTCTTCTACAACATACATGGG
TTCTAGAGCATCGTGATATTGCCATGAGTGGAATTTTCGTTCTTGGCTAC
CTTGGTATTATTCTCGAAGAGACTCTTGCGTTTGACAAGACTGGAGTCGC
ACTTCTCATGGGTGTGGGTGTTTGGACAGTCCTCATGACTGGTGCAGGTG
ATGCGGAAGCTGCCCATCAAGTTAAGGAGCTGCTATCCGATCAAGTCGCT
GAAATTTCCCAAATCCTTTTCTTTCTTATTGGAGCCATGACCATCGTCGA
GATCATAGATGCTCACCGTGGATTTAAGGTTGTCACGGATTACATCACAA
CAAACAAGCGCAAGGTACTTCTGTGGACTATCGGCATTCTCACTTTCTTC
GTTAGTGCCGTCCTTGACAATCTCACTTCCACTATCGTTATCGTATCGCT
TCTTCGGAAACTCGTGGCAGACCCAAGGGAAAGGTGGCTGTTTGGTGCTG
CTGTGGTGATTGCTGCCAATGCTGGCGGAGCATGGACTCCGATTGGGGAC
GTGACTACGACCCAGCTGTGGGTTCATGGCAATATCTCTGCGCTCAAAAC
GATGGCAGATCTTTTCATTCCTTCTTTTGTATCCATGGTCGTATCTCTTG
CGATGTTCACTCCTTTGGTCGGAAACGGGGAGTTTGAACGGCCCAACGAC
GATCAATCTCAACTTGCACCTCGTGCTCCACTGGTATTCTGGAGCGGGCT
TGCTGCTCTAATCTCTGTACCAATTTTTAAGACCGTAACCGGGCTTCCCC
CTTACCTTGGCATGCTTTCAGGGCTTGGAGCACTATGGGTAATGACTGAT
GTGTTGCATGCGGGAGAAGATAGAGAGTCTCTACGCGGCCTGGCGGCTAT
CAAACGAATCGATACATCAGGGGTCTTGTTCTTCCTTGGAATTCTCCTTG
CTGTCGGTGGACTTGAATCAGCTGGAATTCTGGAAACGTTGGCTCGTTTT
CTCGACAGTCATGTTGCAAGTCGAGAGATAATCGCAACCGCCATCGGTTT
GCTTAGCTCCGTCGTGGACAATGTACCTCTGGTAGCGGCAACAATGGGCA
TGTATTCGCTGGATCAAATTCCAGCTGATGGGCTGCTTTGGCAGCTTATC
GCCTTCTGTGCTGGTACGGGTGGTAGCATCTTAATCATCGGTAGCGCTGC
CGGTGTCGCCTTCATGTAAGTTGTTTACTCCGTGTTGATATTTTGGGCTC
TCTTGCATTCTTCTTTATCCTGTGCGTGCACTTACTAACATTCTGCTTCT
TTTTTTCGTAATTTGAAGGGGAATGGAAAAGGTAGAGTTCGGATGGTACG
CGAAGAAGGCAAGTATTCCAACCCTTGCTGGCTTCTTTGCTGGCATTGGA
ACTTACCTCGCGTTGCACTCGCTCAATCTACCGGCAATTGCCTCGACCTT
CGGGTTTTGA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:188011..189670-

>Gchil7108.t1 ID=Gchil7108.t1|Name=Gchil7108.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00004441_pilon:188011..189670- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCTCCAGAGCGTCAAACGGAGAAAGGCAAACCATCATCTAATGG
CGCGCCGTCTCTTGCCCCGTTGGAAGAGCGCATGCCAGACATTGTACTTT
CGGAAGTTGACCGACCAACCCCTGAGATGATCCATCCTGACCCAGCGAAG
GCCGCCGTTGACTGCGAAACAAGTAAGTCTGACAGTGCGCGCGCGGCGGG
AGTGGGTATCTTCGTAACAGTAGTCGCCGCTCTTCTACAACATACATGGG
TTCTAGAGCATCGTGATATTGCCATGAGTGGAATTTTCGTTCTTGGCTAC
CTTGGTATTATTCTCGAAGAGACTCTTGCGTTTGACAAGACTGGAGTCGC
ACTTCTCATGGGTGTGGGTGTTTGGACAGTCCTCATGACTGGTGCAGGTG
ATGCGGAAGCTGCCCATCAAGTTAAGGAGCTGCTATCCGATCAAGTCGCT
GAAATTTCCCAAATCCTTTTCTTTCTTATTGGAGCCATGACCATCGTCGA
GATCATAGATGCTCACCGTGGATTTAAGGTTGTCACGGATTACATCACAA
CAAACAAGCGCAAGGTACTTCTGTGGACTATCGGCATTCTCACTTTCTTC
GTTAGTGCCGTCCTTGACAATCTCACTTCCACTATCGTTATCGTATCGCT
TCTTCGGAAACTCGTGGCAGACCCAAGGGAAAGGTGGCTGTTTGGTGCTG
CTGTGGTGATTGCTGCCAATGCTGGCGGAGCATGGACTCCGATTGGGGAC
GTGACTACGACCCAGCTGTGGGTTCATGGCAATATCTCTGCGCTCAAAAC
GATGGCAGATCTTTTCATTCCTTCTTTTGTATCCATGGTCGTATCTCTTG
CGATGTTCACTCCTTTGGTCGGAAACGGGGAGTTTGAACGGCCCAACGAC
GATCAATCTCAACTTGCACCTCGTGCTCCACTGGTATTCTGGAGCGGGCT
TGCTGCTCTAATCTCTGTACCAATTTTTAAGACCGTAACCGGGCTTCCCC
CTTACCTTGGCATGCTTTCAGGGCTTGGAGCACTATGGGTAATGACTGAT
GTGTTGCATGCGGGAGAAGATAGAGAGTCTCTACGCGGCCTGGCGGCTAT
CAAACGAATCGATACATCAGGGGTCTTGTTCTTCCTTGGAATTCTCCTTG
CTGTCGGTGGACTTGAATCAGCTGGAATTCTGGAAACGTTGGCTCGTTTT
CTCGACAGTCATGTTGCAAGTCGAGAGATAATCGCAACCGCCATCGGTTT
GCTTAGCTCCGTCGTGGACAATGTACCTCTGGTAGCGGCAACAATGGGCA
TGTATTCGCTGGATCAAATTCCAGCTGATGGGCTGCTTTGGCAGCTTATC
GCCTTCTGTGCTGGTACGGGTGGTAGCATCTTAATCATCGGTAGCGCTGC
CGGTGTCGCCTTCATGGGAATGGAAAAGGTAGAGTTCGGATGGTACGCGA
AGAAGGCAAGTATTCCAACCCTTGCTGGCTTCTTTGCTGGCATTGGAACT
TACCTCGCGTTGCACTCGCTCAATCTACCGGCAATTGCCTCGACCTTCGG
GTTTTGA
back to top