Gchil7158.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7158.t1
Unique NameGchil7158.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length152
Homology
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A2V3IND1_9FLOR (E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IND1_9FLOR)

HSP 1 Score: 241 bits (615), Expect = 9.540e-80
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 0
Query:    1 MGVSWSSVSDCLGDISGSSQARYNRVTASRRVEQSSSASRTHNAALRQRCVSEEKQLSISAASPGAAIXXXXXXLIPDSNAVYNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEA-GKLQS 150
            MGVSWSSVSDCLGDISGSS  RYNRV  SRRVEQSS+ SRT   ALRQR +S+EKQL+IS ASPGAAI      LIPDSNAVYNLL+DEDEDVCPTCLE Y+KDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEA  K+QS
Sbjct:    1 MGVSWSSVSDCLGDISGSSNTRYNRVPPSRRVEQSSTTSRTDRTALRQRYLSDEKQLAISVASPGAAIAPPPPPLIPDSNAVYNLLEDEDEDVCPTCLETYEKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEAQDKIQS 151          
BLAST of Gchil7158.t1 vs. uniprot
Match: R7Q462_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q462_CHOCR)

HSP 1 Score: 182 bits (463), Expect = 1.560e-56
Identity = 105/156 (67.31%), Postives = 117/156 (75.00%), Query Frame = 0
Query:    1 MGVSWSSVSDCLGDIS-GSSQARYNRVTASRRVEQSSSASRTHN--AALRQRCV---SEEKQLSISAASPGAAIXXXXXXLIPDSNAVYNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEAGKLQS 150
            MGVSWSSVSDCLG  S GS+  RY+RV  S RV  SS +SR     +ALRQR     SEEK    +  S GAAI  XXX L+PDSNAVYNLLDDE EDVCPTCLE Y +DNPKI S CGH+FHLQCIVAWETRSG+RFCPICAKVMEY EA + ++
Sbjct:    1 MGVSWSSVSDCLGSFSDGSAHPRYSRVPPSHRVGPSSVSSRQPERLSALRQRSTPPASEEKLAHCAVPSQGAAIAPXXXPLVPDSNAVYNLLDDEQEDVCPTCLECYAEDNPKISSTCGHSFHLQCIVAWETRSGSRFCPICAKVMEYAEAEQFRT 156          
BLAST of Gchil7158.t1 vs. uniprot
Match: M2WVX4_GALSU (Zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WVX4_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 6.890e-21
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   75 LIPDSNAVYNLL-DDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVE 144
            L+P+S AVY L+ +DE ED+CPTCLE Y ++NPKI ++CGH FHL CI  W  RS  R+CP+CA +ME+ E
Sbjct:  204 LVPESTAVYELVSEDEKEDICPTCLEPYTEENPKITAKCGHTFHLSCIYEWLERS--RYCPVCANIMEFEE 272          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A7S1ETP9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETP9_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 1.460e-19
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   75 LIPDSNAVYNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEAGKL 148
            L+PDS AVY+LL+ E E+VCPTCLE Y  +NP++ S C H FHL CI  W  RS   +CPICAK M + +  ++
Sbjct:   58 LVPDSKAVYDLLEGEHEEVCPTCLEEYTNENPRMTSMCQHTFHLACIYEWLERSP--YCPICAKKMMFADGSEM 129          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A0A9D226_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D226_ARUDO)

HSP 1 Score: 82.8 bits (203), Expect = 7.530e-18
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEA 145
            Y ++  EDEDVCPTCLE Y  DNPKI+++C H FHL CI  W  RS T  CPIC K ME+ E+
Sbjct:   39 YTVVTSEDEDVCPTCLEEYTPDNPKIITKCCHHFHLGCIYEWMERSDT--CPICGKEMEFCES 99          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A804PZR7_MAIZE (RING-type domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804PZR7_MAIZE)

HSP 1 Score: 81.6 bits (200), Expect = 2.370e-17
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEA 145
            Y ++  EDEDVCPTCLE Y  DNPKI+++C H FHL CI  W  RS T  CPIC K ME+ E+
Sbjct:   43 YAVVASEDEDVCPTCLEEYTPDNPKIITKCCHHFHLGCIYEWMERSDT--CPICGKEMEFCES 103          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A7S1TND2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TND2_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 3.210e-17
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   54 EKQLSISAASPGAAIXXXXXXLIPDSNAVYNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVM 140
            EK +     +P   +      L+PD+ AVY+L++ E EDVCPTCLE Y  DNPK+ S C H+FHL C+  W  RS   +CPICA+ M
Sbjct:   64 EKNIGFEEGTPAPPVPPP---LVPDAKAVYDLIEGE-EDVCPTCLEEYTIDNPKMTSECQHSFHLACVYEWLERSP--YCPICAQRM 144          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A1X6PGA7_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGA7_PORUM)

HSP 1 Score: 86.7 bits (213), Expect = 3.940e-17
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   75 LIPDSNAVYNLLDDED--EDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVE 144
            +IPD++AVY L  DE+  EDVCPTCLE Y   NPK+V RCGH FHL CI  W  RS   +CP+CA+ M + E
Sbjct:  329 MIPDAHAVYQLTGDEEGEEDVCPTCLEGYSASNPKMVPRCGHVFHLACIYEWLERSP--YCPVCARRMVFEE 398          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A0V0H326_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H326_SOLCH)

HSP 1 Score: 81.3 bits (199), Expect = 5.110e-17
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 0
Query:   83 YNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVE 144
            +++   EDEDVCPTCLE Y  DNPKI ++C H +HL CI  W+ RS T  CP+C K+ME+ E
Sbjct:   59 HDVCSSEDEDVCPTCLEEYTPDNPKIFTKCSHHYHLSCIYEWQERSET--CPVCGKLMEFEE 118          
BLAST of Gchil7158.t1 vs. uniprot
Match: A0A0E0JT12_ORYPU (RING-type domain-containing protein n=12 Tax=Oryzeae TaxID=147380 RepID=A0A0E0JT12_ORYPU)

HSP 1 Score: 82.4 bits (202), Expect = 1.010e-16
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   80 NAVYNLLDDEDEDVCPTCLEMYDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVE 144
            N  + ++  EDEDVCPTCLE Y  DNPKI+++C H +HL CI  W  RS T  CPIC K ME+ E
Sbjct:  128 NGSFAVVTSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDT--CPICGKEMEFCE 190          
The following BLAST results are available for this feature:
BLAST of Gchil7158.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IND1_9FLOR9.540e-8082.78E3 ubiquitin-protein ligase n=1 Tax=Gracilariopsis... [more]
R7Q462_CHOCR1.560e-5667.31RING-type domain-containing protein n=1 Tax=Chondr... [more]
M2WVX4_GALSU6.890e-2157.75Zinc finger (C3HC4-type RING finger) family protei... [more]
A0A7S1ETP9_9RHOD1.460e-1952.70Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A0A9D226_ARUDO7.530e-1858.73RING-type domain-containing protein n=1 Tax=Arundo... [more]
A0A804PZR7_MAIZE2.370e-1758.73RING-type domain-containing protein n=1 Tax=Zea ma... [more]
A0A7S1TND2_9RHOD3.210e-1747.13Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6PGA7_PORUM3.940e-1756.94RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A0V0H326_SOLCH5.110e-1754.84Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A0E0JT12_ORYPU1.010e-1655.38RING-type domain-containing protein n=12 Tax=Oryze... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 94..136
e-value: 3.9E-7
score: 39.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 94..136
score: 12.282736
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 91..136
e-value: 6.0E-10
score: 39.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 79..151
e-value: 1.9E-13
score: 51.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..45
NoneNo IPR availablePANTHERPTHR46463ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 32..142
NoneNo IPR availablePANTHERPTHR46463:SF39ZINC FINGER, RING/FYVE/PHD-TYPEcoord: 32..142
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 86..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:385286..385741 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7158.t1Gchil7158.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 385286..385741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7158.t1 ID=Gchil7158.t1|Name=Gchil7158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=152bp
MGVSWSSVSDCLGDISGSSQARYNRVTASRRVEQSSSASRTHNAALRQRC
VSEEKQLSISAASPGAAIAPPPPPLIPDSNAVYNLLDDEDEDVCPTCLEM
YDKDNPKIVSRCGHAFHLQCIVAWETRSGTRFCPICAKVMEYVEAGKLQS
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD