Gchil7134.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7134.t1
Unique NameGchil7134.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:312725..313483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703147.1
Preferred nameNDUFS3
PFAMsComplex1_30kDa
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03936
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0001558,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008137,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010257,GO:0010259,GO:0010646,GO:0010648,GO:0010941,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016604,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023057,GO:0030308,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0040008,GO:0042773,GO:0042775,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0045926,GO:0046034,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050136,GO:0050789,GO:0050794,GO:0051128,GO:0055086,GO:0055114,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1990204,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue1.85e-99
EggNOG OGsCOG0852@1|root,KOG1713@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7134Gchil7134Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 312725..313483 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7134.t1.stop1Gchil7134.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 312725..312727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7134.t1.CDS1Gchil7134.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 312725..313483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7134.t1.exon1Gchil7134.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 312725..313483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7134.t1.start1Gchil7134.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 313481..313483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7134.t1Gchil7134.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 312725..313483 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7134.t1 ID=Gchil7134.t1|Name=Gchil7134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MLSLRRAASTFFPSASRVTHRLFCAPADGAASNPATNAQLEQQKAFLASV
VETLPNSITAARIQAGNAPGGGEMVLEVPHSMTVRVLRFLKLHSSSQFKG
FVQCTAVDYPERKDRFRVVYSLLSTRFNARIRVQTYVDEVTPVESATTVF
KGADWFEREVWDMYGVFFHSHPDLRRILTDYGFEGHPQRKDFPLSGYVEV
RYDDAEKRVVQEPVEIAQEYRSFDYSTPWEVFPEGKRPKDAVQLEQADKK
PE*
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spliced messenger RNA

>Gchil7134.t1 ID=Gchil7134.t1|Name=Gchil7134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004441_pilon:312725..313483- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCTCTCCGCCGCGCAGCATCCACCTTTTTCCCGTCGGCCTCACG
CGTCACTCACCGTCTTTTCTGTGCGCCGGCCGACGGTGCAGCGTCCAATC
CGGCCACCAATGCGCAGCTGGAACAGCAAAAGGCCTTTCTCGCCTCCGTC
GTAGAGACACTTCCAAACTCCATCACCGCCGCCCGAATCCAGGCTGGAAA
TGCCCCGGGCGGTGGCGAAATGGTGTTGGAGGTTCCTCACAGCATGACCG
TGCGCGTGTTGCGATTTTTAAAGTTGCATTCTTCGTCGCAGTTTAAGGGA
TTTGTGCAATGTACTGCTGTTGACTATCCGGAACGAAAGGATAGGTTCAG
GGTGGTTTATAGCCTGCTGTCTACGCGGTTTAATGCTAGGATTCGAGTAC
AAACATATGTGGATGAAGTAACGCCGGTGGAGTCGGCCACTACCGTGTTT
AAGGGAGCTGATTGGTTTGAACGGGAGGTTTGGGATATGTACGGCGTGTT
CTTCCACAGTCATCCGGATCTGCGACGAATTCTAACTGATTATGGATTTG
AGGGTCATCCGCAGCGAAAGGATTTCCCTCTTTCTGGTTACGTTGAGGTT
CGCTACGATGATGCTGAAAAGAGAGTCGTACAAGAACCCGTGGAAATTGC
ACAGGAATATCGAAGCTTCGACTATTCCACACCGTGGGAAGTGTTTCCGG
AGGGTAAACGTCCAAAGGACGCAGTGCAATTGGAACAAGCAGACAAGAAG
CCTGAGTGA
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protein sequence of Gchil7134.t1

>Gchil7134.t1 ID=Gchil7134.t1|Name=Gchil7134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MLSLRRAASTFFPSASRVTHRLFCAPADGAASNPATNAQLEQQKAFLASV
VETLPNSITAARIQAGNAPGGGEMVLEVPHSMTVRVLRFLKLHSSSQFKG
FVQCTAVDYPERKDRFRVVYSLLSTRFNARIRVQTYVDEVTPVESATTVF
KGADWFEREVWDMYGVFFHSHPDLRRILTDYGFEGHPQRKDFPLSGYVEV
RYDDAEKRVVQEPVEIAQEYRSFDYSTPWEVFPEGKRPKDAVQLEQADKK
PE*
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mRNA from alignment at tig00004441_pilon:312725..313483-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7134.t1 ID=Gchil7134.t1|Name=Gchil7134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004441_pilon:312725..313483- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTCTCCGCCGCGCAGCATCCACCTTTTTCCCGTCGGCCTCACG
CGTCACTCACCGTCTTTTCTGTGCGCCGGCCGACGGTGCAGCGTCCAATC
CGGCCACCAATGCGCAGCTGGAACAGCAAAAGGCCTTTCTCGCCTCCGTC
GTAGAGACACTTCCAAACTCCATCACCGCCGCCCGAATCCAGGCTGGAAA
TGCCCCGGGCGGTGGCGAAATGGTGTTGGAGGTTCCTCACAGCATGACCG
TGCGCGTGTTGCGATTTTTAAAGTTGCATTCTTCGTCGCAGTTTAAGGGA
TTTGTGCAATGTACTGCTGTTGACTATCCGGAACGAAAGGATAGGTTCAG
GGTGGTTTATAGCCTGCTGTCTACGCGGTTTAATGCTAGGATTCGAGTAC
AAACATATGTGGATGAAGTAACGCCGGTGGAGTCGGCCACTACCGTGTTT
AAGGGAGCTGATTGGTTTGAACGGGAGGTTTGGGATATGTACGGCGTGTT
CTTCCACAGTCATCCGGATCTGCGACGAATTCTAACTGATTATGGATTTG
AGGGTCATCCGCAGCGAAAGGATTTCCCTCTTTCTGGTTACGTTGAGGTT
CGCTACGATGATGCTGAAAAGAGAGTCGTACAAGAACCCGTGGAAATTGC
ACAGGAATATCGAAGCTTCGACTATTCCACACCGTGGGAAGTGTTTCCGG
AGGGTAAACGTCCAAAGGACGCAGTGCAATTGGAACAAGCAGACAAGAAG
CCTGAGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:312725..313483-

>Gchil7134.t1 ID=Gchil7134.t1|Name=Gchil7134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004441_pilon:312725..313483- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTCTCCGCCGCGCAGCATCCACCTTTTTCCCGTCGGCCTCACG
CGTCACTCACCGTCTTTTCTGTGCGCCGGCCGACGGTGCAGCGTCCAATC
CGGCCACCAATGCGCAGCTGGAACAGCAAAAGGCCTTTCTCGCCTCCGTC
GTAGAGACACTTCCAAACTCCATCACCGCCGCCCGAATCCAGGCTGGAAA
TGCCCCGGGCGGTGGCGAAATGGTGTTGGAGGTTCCTCACAGCATGACCG
TGCGCGTGTTGCGATTTTTAAAGTTGCATTCTTCGTCGCAGTTTAAGGGA
TTTGTGCAATGTACTGCTGTTGACTATCCGGAACGAAAGGATAGGTTCAG
GGTGGTTTATAGCCTGCTGTCTACGCGGTTTAATGCTAGGATTCGAGTAC
AAACATATGTGGATGAAGTAACGCCGGTGGAGTCGGCCACTACCGTGTTT
AAGGGAGCTGATTGGTTTGAACGGGAGGTTTGGGATATGTACGGCGTGTT
CTTCCACAGTCATCCGGATCTGCGACGAATTCTAACTGATTATGGATTTG
AGGGTCATCCGCAGCGAAAGGATTTCCCTCTTTCTGGTTACGTTGAGGTT
CGCTACGATGATGCTGAAAAGAGAGTCGTACAAGAACCCGTGGAAATTGC
ACAGGAATATCGAAGCTTCGACTATTCCACACCGTGGGAAGTGTTTCCGG
AGGGTAAACGTCCAAAGGACGCAGTGCAATTGGAACAAGCAGACAAGAAG
CCTGAGTGA
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