Gchil7280.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7280.t1
Unique NameGchil7280.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length169
Homology
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BLAST of Gchil7280.t1 vs. uniprot
Match: A0A7J9VS81_9ACTN (Cupin domain-containing protein n=1 Tax=Propionibacteriales bacterium TaxID=2015801 RepID=A0A7J9VS81_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 6.620e-6
Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0 
Query:   79 ELQAGLERVEAGAWIPPHSHNTEEIVLVYEGQGYVHFENGRKTAIQKGSMIHIVTGVHHAFQNAADQPMWLMWCF 153
            ++ +G+  + AG  IP H HNT+E VLV EGQ  V  + G +  ++ G    +  GV H + N  +  + ++W +
Sbjct:   36 QILSGISEIPAGGEIPLHHHNTDEFVLVIEGQAVVTID-GAEHNVEGGDSTLVFAGVRHRYVNVGEGRLRILWVY 109
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BLAST of Gchil7280.t1 vs. uniprot
Match: A0A1G6IBR7_9BURK (Cupin domain-containing protein n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1G6IBR7_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 8.230e-6
Identity = 28/81 (34.57%), Postives = 41/81 (50.62%), Query Frame = 0 
Query:   79 ELQAGLERVEAGAWIPPHSHNTEEIVLVYEGQGYVHFENGRKTAIQKGSMIHIVTGVHHAFQNAADQPMWLMWCFPVLEKG 159
            +L    + +  GA  PPHSH+TEE+VL + G+G VH + G+       S + +   V H   N  D+PM +   FP    G
Sbjct:   36 QLSIWKQTLAPGASTPPHSHDTEEVVLCHAGRGEVHLD-GQVHRFGPASSVLLPRDVPHQIFNVGDEPMEITGVFPAAPVG 115
The following BLAST results are available for this feature:
BLAST of Gchil7280.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7J9VS81_9ACTN6.620e-632.00Cupin domain-containing protein n=1 Tax=Propioniba... [more]
A0A1G6IBR7_9BURK8.230e-634.57Cupin domain-containing protein n=2 Tax=unclassifi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 62..166
e-value: 8.5E-18
score: 66.0
IPR013096Cupin 2, conserved barrelPFAMPF07883Cupin_2coord: 84..151
e-value: 2.4E-13
score: 49.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score: 6.0
NoneNo IPR availableCDDcd02208cupin_RmlC-likecoord: 86..147
e-value: 6.48229E-10
score: 50.9442
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 60..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:943828..944334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1Gchil7280.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 943828..944334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=169bp
MDRTSRSPFSLHTAASFALACLSIGMTSWSFRKSAPLHGGSVNVYNAWNG
VGMHAVPPLVLDSESSTNRTNWEIVRTAELQAGLERVEAGAWIPPHSHNT
EEIVLVYEGQGYVHFENGRKTAIQKGSMIHIVTGVHHAFQNAADQPMWLM
WCFPVLEKGEAFQFRQRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR013096Cupin_2
IPR011051RmlC_Cupin_sf