Gchil7121.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7121.t1
Unique NameGchil7121.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length1332
Homology
BLAST of Gchil7121.t1 vs. uniprot
Match: A0A2V3IXR5_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXR5_9FLOR)

HSP 1 Score: 1097 bits (2837), Expect = 0.000e+0
Identity = 634/1354 (46.82%), Postives = 831/1354 (61.37%), Query Frame = 0
Query:    1 MHSSADGV---RERRRRKREARDRLQAIASFLIRSERRGFRVSPHAQYVLENECLEVFKDYDGPPDTFQFATMLRETAVRMFRQGRYKEANQRYRMASLFNPFDATLLSNRATCLYNLRRYRRCIDICQICFSAFPNLFCPENTGLYFQVLILLANSHIKLRSFREAMDVYEVLIGVKEKLRSQKDTRVSMT--EAANKLLRFEIDLKIARQSPHNP-VDDPALHKERPVRPADFPFQEDRGHFLHPHTPSCYLREINTGIDDYDLNAEEDGDPALVITVGHLCHHVYHMGMGACGHEDGVDVLWQNDSDSCSAQDDDGDSEESFYFVEDTVYYDESG---SDEDSKTECAC--VHNQSEATDLATVTRER--LPSDNDKKFLTWRQDLRCDEFGLIESAPFDREGLPNVHRNTSLDSRSNSQVNAEMGSSDNSAPRSPPTEFSRDPKSSRLKDRELLSMDDAVESLRLARYSDNAPCSPSEKETENNLDYGKLVTELLLFMSRTQRSLKSSPKRIRLFHDSDSEEPISRLDFSYVPENDDWDLFEKAFKRLPSGNDTFLSRCTTQLFGSSFQSSGALDFTRYFGSHVRIKTEGGKKKSKSCVGNCPPCFARRMWKLRFKSHKAGDAEQFFLSAYNDERRDDKSFLSLHEWRCSDNYGSGYELATEHGILVHGVAYLILLQNEVCWQQNEVGIVKSIQRPFSAALLKNMKTRTDLMAISTLRDVLLETLYLMRCIKYQAWKNVPPSHQFVRTPEIVSEMASVAPDLSEFSSKEQETRLMSQNGTAMENMSKWAAVGHLAKEEEWVYHTLSRDVRDVILHFERKALSIVPAPMPPILNTVEGGMTQSSGLEHIL-----YGQRSRELESRSKSRKKVDLERGEILLTRALEAFPLKLRLYYKRADVRYQMKKWDACIRDLKKLQSLARKRKEDRKKHSLGSEQEKILLYHVLLLKADAHGARAQKVSSARKSHILASIDLYKRAMNMYAKKKRNRTKILQKVRKQEHLLVSLETSKNARRKEIKPATKKSEGEQNLSVVKQVVRXXXXXXXXXXXXXXX-ILVPGSRYGALLEDS----TSTHSSPQQRPNAFQVPSSGTILRAADNGVNRTRGDRARSNNEPSPETVLIEVRRILLLFGGEARSSDVVANLDLTGWNIHDSGEFITRTFKALHSLCREYGTGFEIRAGSHSDPVIAVTSGEDFTLVSRGGSCSSSRK--GSERP----PRYRPTRHGNSSRSRSSTLVQPESQIGLPIRTSEAFDYANIIENLL---KEKNVAQNPSQAMVRSRTDREKECCICMDNPSDSLTIPCRHPFCENCILNYLTREKSDKKCPVCRCEVINVASMVVH 1322
            M+SS+ G+   +ERR   REAR+RLQAIASFLIRSERRG R+SPHAQY++ENECL+V+K YD  PDTF+FATMLRETAVRMFRQGRYKEANQRYRMASLFNP+D TLLSNRATC++NLRRYRRCI+ICQ+CFSAFP+L+  +NTGLYFQ+LILLAN+H++LR F EA+ V+  L+ VKEKLR++KD+R  +T  EA+NK+ RFE+DL++A     +   ++P    ++PVRP +FP+QE+RG FLHPHTP CYLREINTGIDDYDL +EEDGDP+L++ V +LCHHVYHMGMGAC H+D  D +W  +SDSCS   D+G  E  F   +    +   G     +    EC C   H   EA +   ++ +   LP   +    +                 F +       +           V   +GS+D      PP       ++S+  D  +L++ +AVE+ R+AR +       S +    +  Y +LVTEL  F S+   +  +  K  RLF+DS+SEEP+S LD+S V E    +  EKA   LP GNDTFLS+C  Q+FG SF S+GALDFTRYFG H R ++   KKK+K C  NC PCFARRMWKLRFKS+K G+A QF  S   D+  D+K+FL   EW  S  YGSGYE A    +LVHG+AYLILLQ+EV WQ+N    +  +Q+ F+  L +N+KTR DL +I  L  +L ET+ L+ CI Y A K +P SHQF  T + V+E     PDL   S K++E  L+S+NGT  EN+S W+   ++ KEEEWVYHTL RDVR++ILHFERK+LSI P  +P I+N        S+G E  L     Y QRSRELE +S SRK VDL R E LL R LE  P   RLY+KRA+VR+ MK W +CI+DL KLQSL  +        S  SE+E++LLYH   L+ D H  +A++ S A+  H+  SID Y++A+ +  + K+NRT +L+K+++Q++ + ++E   + +R     A       +  S VK  V                  LV GSRYGALL       T+    P+     F   ++ +   A+ +G  R +    +  +  + + +L EV RIL LFGGEARSSD++ANLD T W+I +    +  T+  LH LC   G GFEIRAGS SDPVI +T   +FT VSR   C S     G+ER      R R                          R S+   Y+ ++  LL    EKN A +  +A  +  +DR+KECCICMDNP D LTIPCRHPFCE CIL+YL RE S K CPVCR +V NVASM +H
Sbjct:    1 MYSSSYGIISSKERRXXXREARNRLQAIASFLIRSERRGLRISPHAQYLIENECLDVYKAYDESPDTFEFATMLRETAVRMFRQGRYKEANQRYRMASLFNPYDPTLLSNRATCIFNLRRYRRCIEICQLCFSAFPDLYYEDNTGLYFQILILLANAHLQLRQFSEAIAVHNTLLQVKEKLRAEKDSRTDVTVKEASNKIRRFEMDLRLANSDSWDAGQENPHTDTDKPVRPKNFPYQEERGRFLHPHTPRCYLREINTGIDDYDLASEEDGDPSLIVNVENLCHHVYHMGMGACAHDDD-DFIWPYESDSCSVSGDEGSDEYGFQGAQAQHPHSRDGLVGEGDYEACECHCDEYHEGEEADETEILSEDLCDLPQLKEADSESXXXXXXXXXXXXXXXXXFSKAEXXXXDKKE--------DVRCRVGSNDGGYTLKPPQH-----RNSKFSD--VLTLREAVEARRMARSTLE---QQSPRRNGADAHYWRLVTELACFTSKKMYNPSTVRKGNRLFYDSESEEPMSELDYSLVAETQATEFLEKACALLPEGNDTFLSKCIAQIFGQSFHSNGALDFTRYFGPHSRSQSHSSKKKAKGCDRNCAPCFARRMWKLRFKSYKTGNALQFDRSILGDKPIDEKTFLFPPEWFLSGYYGSGYETAFAVALLVHGIAYLILLQSEVSWQRNGSQNITDMQQRFNTVLFENVKTRNDLRSIFELFCMLSETVNLIDCINYHASKGIPRSHQFTNTSQSVAENLRSTPDLQHISKKDREATLLSRNGTPFENLSNWSMDQYVGKEEEWVYHTLFRDVREIILHFERKSLSIFPNSVPFIMN--------STGFEKDLLITGLYRQRSRELEKKSNSRKNVDLRRSERLLNRVLEVHPSTARLYFKRAEVRFMMKHWKSCIKDLSKLQSLVTQSGGKGTDPSTLSERERVLLYHSYNLEGDVHREKAKETSPAQVCHVTTSIDRYRKALAISPRTKKNRTHLLKKIQEQQNRMTAVENKTHGKRSTKPSANNSKPQSKKRSPVKTTVSTSEHNHDTSSSDENEDALVSGSRYGALLGTPKPLPTTGREPPKPAKQRFSANATNSPGNASASGGRRQK----KKQDALTVDYILSEVHRILSLFGGEARSSDIMANLDFTQWSISNPKTHVLNTYGTLHGLCMSSGQGFEIRAGSQSDPVIGLTDEGEFTPVSRRKPCPSKSPSIGNERKREVSARGRRXXXXXXXXXXXXXXXXXXXXXXXXTRMSQTIHYSKLVNELLTSENEKNAAGSKQKAGAQE-SDRDKECCICMDNPPDCLTIPCRHPFCEACILDYLARENSAKNCPVCRSDVTNVASMAIH 1322          
BLAST of Gchil7121.t1 vs. uniprot
Match: R7QI65_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI65_CHOCR)

HSP 1 Score: 239 bits (610), Expect = 2.440e-60
Identity = 247/949 (26.03%), Postives = 401/949 (42.26%), Query Frame = 0
Query:   21 RLQAIASFLIRSERRGFRVSPHAQYVLENECLEVFKDYDGPPDTFQFATMLRETAVRMFRQGRYKEANQRYRMASLFNPFDATLLSNRATCLYNLRRYRRCIDICQICFSAFPNLFCPENTGLYFQVLILLANSHIKLRSFREAMDVYEVLIGVKEKLRSQKDTRVSMTEAANKLLRFEIDLKIARQSPHNPVDDPALHKERPVRPADFPFQEDRGHFLHPHTPSCYLREINTGIDDYDLNAEEDGDPALVITVGHLCHHVYHMGMGACGHEDGVDVLWQNDSDSCSAQDDDGDSEESFYFVEDTVYYDESGSDEDSKTECACVHNQSEATDLATVTRER----LPSDNDKKFLTWRQDLRCDEFG----LIESAPFDR--EGLPNVHRNTSLDSRSNSQVNAEMGSSDNSAPRSPPTEFSRDPKSSRLKDRELLSMDD-------AVESLRLARYSDN---------------------APCSPSEKETENNLDYGKLVTELLLFMSRTQRSLKSSPKRIRLFHDSDSEEPISRLDFSYVPENDDWDLF----EKAFKRLPSGNDTFLSRCTTQLFGSSFQSSGALDFTRYFGSHVRIKTEGGKKKSKSCVGNCPPCFARRMWKLRFKSHKAGDAEQFFLSAYNDERRDDKSFLSLHEWRCSDNYGSGYELATEHGILVHGVAYLILLQNEVCWQQNEVGIVKSIQRPFSAALLKNMKTRTDLMAISTLRDVLLETLYLMRCIK---YQAWKNVPPSHQFVRTPEIVSEMA-SVAPDLSEFSSKEQETRLMSQNGTAMENMSKWAAVGHLAKEEEWVYHTLSRDVRDVILHFERKALSIVPAPMPPILNTVEGGMTQSSGLEHILYGQRS--------RELESRSKSRKKV------------DLERGEILLTRALEAFPLKLRLYYKRADVRYQMKKWDACIRDLKK 903
            R +A+ S   R+ER    +S   +  LE +   +F      P+  QFA  L+  AVR+ RQ RY+EAN R+ +AS FNP D TL+SNRATC+YNL +Y +CID+C  C +AFP L   EN  LY ++LI +  ++I+L +F EA    +VL  +++ L     + +   E +  +  FE  L  A+ S               V       ++D+  +      S                   DG+    + +  LC H++  G G C H+        +D  + S+                 V   E    + S+ + A  H+  + +  +  + ER      +D++   L   +D   D  G         PFD   +   N+        R+   +    GS+          +F   PK++     EL S          A+ S   +  S                       +P SPS       L + K+ T      +R  R   S       +   D   P S      +PE  D        E   K   S +   L     ++ G +F+++ ++DFTR FG+HV   +   K+K K C   C  CFAR+MW LRF S     A+        D RR+ ++FL+   W+ +  Y SGYE+A +   LVHGV YL  LQ+EV W+ ++V   + IQ  F ++L +  ++  ++  +  L  ++ +TL L        +   K    S QF ++  +V++ + S+ P  SE      +T L S+      N+  W+ +GH+ KEEEW+YH L RD+  ++    + AL+      PP+   +E G + S   E    G+RS        R +    ++R ++            ++ +G  L++ A+   P + RL+ KRA VR +   W   + D+ K
Sbjct:   19 RREALKSLFARAERHNVGISRAVRADLELQAKSLFDYATNSPEATQFAAHLKSIAVRLLRQRRYREANARFGLASRFNPGDPTLISNRATCMYNLAKYPKCIDMCLDCLNAFPKLG-MENPKLYCKILIRMGRANIELDNFEEASSARDVLTSMRKSLADNFGSEIPQEEFSALIDPFERHLN-AKLSCSTKARKAGSSSSGGVSTM----KDDKDEYGGDGESSXXXXXXXXXXXXXXXXXXXDGNLDGFVKIEDLCPHLHRHGNGPCDHQ-------FSDRPTVSS-----------------VSPFEGDGGQYSEPDLANSHSSGDGSISSLASSERDENVATTDSNMPDLVSEEDGGSDSEGSDGDFDGPVPFDSSVKSSRNLQTADGRPQRTRKSLKPAQGSAKK-------RQFPAHPKATVEVSSELSSKQGVGRANGAAIASATASMLSPTNFQPWFVKPRTRTPPPADCLKSPFSPSVIAAHAKLPF-KVPTLPPEVAARELRGKVSD----ECYESDDERGPRSA---GLLPERRDEHRSILNQESNAKGNGSNHSMILRAMLKEVMGKTFRTNRSVDFTRIFGNHVAAASSS-KRKKKICDKRCASCFARKMWNLRFVSTDLDVAKGALNDIETDSRRERRTFLARDLWQGTGYYASGYEMAFDVPALVHGVVYLCHLQSEVYWRGDKVAFARDIQYNFISSLERIYRSFPNIDFLFMLFIMIRDTLNLFGLFPDPFHHGDKG--RSFQFSKSASVVAQKSLSLKPGESENDLDICDTLLASRTEDVNRNLFNWSRLGHVTKEEEWIYHILLRDISHLMTRLMKPALN------PPMY--LEQGESFSDAFERAC-GERSGNEKYWRCRIVTIVDRTRHRMIERTAHDISHAGNIAKGTHLISHAITGRPRQPRLFLKRAQVRSEQAMWKESLSDIDK 910          
The following BLAST results are available for this feature:
BLAST of Gchil7121.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXR5_9FLOR0.000e+046.82RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7QI65_CHOCR2.440e-6026.03RING-type domain-containing protein n=1 Tax=Chondr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 878..911
e-value: 15.0
score: 13.3
coord: 102..135
e-value: 1.1
score: 18.3
coord: 145..178
e-value: 160.0
score: 4.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 1269..1309
e-value: 3.5E-7
score: 39.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1269..1310
score: 13.212175
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 66..195
e-value: 5.7E-14
score: 53.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 67..172
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1230..1328
e-value: 3.4E-13
score: 51.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 1266..1314
e-value: 3.9E-9
score: 36.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 398..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1209..1223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1000..1073
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1185..1223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1051..1073
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1011..1030
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..444
NoneNo IPR availableCDDcd16449RING-HCcoord: 1269..1309
e-value: 2.46303E-11
score: 57.4773
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1255..1316
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 1284..1293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:277730..281725 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7121.t1Gchil7121.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 277730..281725 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7121.t1 ID=Gchil7121.t1|Name=Gchil7121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=1332bp
MHSSADGVRERRRRKREARDRLQAIASFLIRSERRGFRVSPHAQYVLENE
CLEVFKDYDGPPDTFQFATMLRETAVRMFRQGRYKEANQRYRMASLFNPF
DATLLSNRATCLYNLRRYRRCIDICQICFSAFPNLFCPENTGLYFQVLIL
LANSHIKLRSFREAMDVYEVLIGVKEKLRSQKDTRVSMTEAANKLLRFEI
DLKIARQSPHNPVDDPALHKERPVRPADFPFQEDRGHFLHPHTPSCYLRE
INTGIDDYDLNAEEDGDPALVITVGHLCHHVYHMGMGACGHEDGVDVLWQ
NDSDSCSAQDDDGDSEESFYFVEDTVYYDESGSDEDSKTECACVHNQSEA
TDLATVTRERLPSDNDKKFLTWRQDLRCDEFGLIESAPFDREGLPNVHRN
TSLDSRSNSQVNAEMGSSDNSAPRSPPTEFSRDPKSSRLKDRELLSMDDA
VESLRLARYSDNAPCSPSEKETENNLDYGKLVTELLLFMSRTQRSLKSSP
KRIRLFHDSDSEEPISRLDFSYVPENDDWDLFEKAFKRLPSGNDTFLSRC
TTQLFGSSFQSSGALDFTRYFGSHVRIKTEGGKKKSKSCVGNCPPCFARR
MWKLRFKSHKAGDAEQFFLSAYNDERRDDKSFLSLHEWRCSDNYGSGYEL
ATEHGILVHGVAYLILLQNEVCWQQNEVGIVKSIQRPFSAALLKNMKTRT
DLMAISTLRDVLLETLYLMRCIKYQAWKNVPPSHQFVRTPEIVSEMASVA
PDLSEFSSKEQETRLMSQNGTAMENMSKWAAVGHLAKEEEWVYHTLSRDV
RDVILHFERKALSIVPAPMPPILNTVEGGMTQSSGLEHILYGQRSRELES
RSKSRKKVDLERGEILLTRALEAFPLKLRLYYKRADVRYQMKKWDACIRD
LKKLQSLARKRKEDRKKHSLGSEQEKILLYHVLLLKADAHGARAQKVSSA
RKSHILASIDLYKRAMNMYAKKKRNRTKILQKVRKQEHLLVSLETSKNAR
RKEIKPATKKSEGEQNLSVVKQVVRRRQSSPASSSEDEEEILVPGSRYGA
LLEDSTSTHSSPQQRPNAFQVPSSGTILRAADNGVNRTRGDRARSNNEPS
PETVLIEVRRILLLFGGEARSSDVVANLDLTGWNIHDSGEFITRTFKALH
SLCREYGTGFEIRAGSHSDPVIAVTSGEDFTLVSRGGSCSSSRKGSERPP
RYRPTRHGNSSRSRSSTLVQPESQIGLPIRTSEAFDYANIIENLLKEKNV
AQNPSQAMVRSRTDREKECCICMDNPSDSLTIPCRHPFCENCILNYLTRE
KSDKKCPVCRCEVINVASMVVHNDTGNGLEL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001841Znf_RING
IPR011990TPR-like_helical_dom_sf
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS