Gchil7149.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7149.t1
Unique NameGchil7149.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Homology
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BLAST of Gchil7149.t1 vs. uniprot
Match: R7Q2M8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2M8_CHOCR)

HSP 1 Score: 121 bits (303), Expect = 9.580e-31
Identity = 114/159 (71.70%), Postives = 131/159 (82.39%), Query Frame = 0 
Query:   41 STAALVLSAALLIPVTATAEDVPLVFDHDQSLSGADFSNRSDLRGSIFSKSNCKGASFAGSDLTSXXXXXXXXXXXXXXXXXAVYATATRTKFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSFLDKVTTIALCKRASGINSRTGMSTSESLMCPE 199
            + AA++LSAA+L P   +A+D PL+FDHDQSLSGADFSNR DLR SIFSKSNCK A+FAG+DLT XXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXX +DS L K TT+ LCK+A+G+NS+TG+ T+ESLMCPE
Sbjct:   67 AAAAMMLSAAMLSPAHVSAQDAPLIFDHDQSLSGADFSNRKDLRASIFSKSNCKQANFAGADLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDSLLGKATTLKLCKKATGVNSKTGVPTAESLMCPE 225
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BLAST of Gchil7149.t1 vs. uniprot
Match: A0A2V3IND6_9FLOR (Thylakoid lumenal 17.4 kDa protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IND6_9FLOR)

HSP 1 Score: 75.5 bits (184), Expect = 1.560e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:   52 LIPVTATAEDVPLVFDHDQSLSGADFSNRSDLRGSIFSKSNCKGASFAGS 101
            ++P T +A + PLVFDHDQSL GA+FSNRSDLRG+IFSKSNCK ASF GS
Sbjct:    1 MVPGTVSALETPLVFDHDQSLVGANFSNRSDLRGAIFSKSNCKFASFEGS 50
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BLAST of Gchil7149.t1 vs. uniprot
Match: A0A7S3ECV6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECV6_9RHOD)

HSP 1 Score: 73.6 bits (179), Expect = 1.670e-12
Identity = 98/163 (60.12%), Postives = 119/163 (73.01%), Query Frame = 0 
Query:   37 SLRKSTAALVLSAALLIPVTATAEDVPLVFDHDQSLSGADFSNRSDLRGSIFSKSNCKGASFAGSDLTSXXXXXXXXXXXXXXXXXAVYATATRTKFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSFLDKVTTIALCKRASGINSRTGMSTSESLMCPE 199
            SL +  AA+V++ ++       A DV L +DH+QSL GADFSNR DL G+IF+K+NC+ A F  +DL  XXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+D+ +D  T + LCK+A GIN  T +ST+ESLMCP+
Sbjct:   68 SLGQLGAAVVIAGSV-FAAPVIAGDV-LNYDHNQSLGGADFSNRKDLVGAIFTKANCQSAIFKNADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDALIDPATVLRLCKKAKGINPTTEVSTAESLMCPD 228
The following BLAST results are available for this feature:
BLAST of Gchil7149.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7Q2M8_CHOCR9.580e-3171.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IND6_9FLOR1.560e-1474.00Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
A0A7S3ECV6_9RHOD1.670e-1260.12Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF13599Pentapeptide_4coord: 88..169
e-value: 7.5E-12
score: 45.3
NoneNo IPR availableGENE3D2.160.20.80coord: 68..198
e-value: 3.7E-30
score: 105.8
NoneNo IPR availablePANTHERPTHR47121THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTICcoord: 71..199
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 71..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:366157..366942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7149.t1Gchil7149.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 366157..366942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7149.t1 ID=Gchil7149.t1|Name=Gchil7149.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MKGIGFVAIANISTRSAEKLSVSHTQEGRNGPLRWESLRKSTAALVLSAA
LLIPVTATAEDVPLVFDHDQSLSGADFSNRSDLRGSIFSKSNCKGASFAG
SDLTSAQLDDANFQGANFEGATAVYATATRTKFQRANLKDVDFSNANLIS
AQFDGADIEGADFTDSFLDKVTTIALCKRASGINSRTGMSTSESLMCPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat