Gchil7126.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7126.t1
Unique NameGchil7126.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:289507..290607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3659.XP_004156942.1
PFAMsAldo_ket_red
Max annot lvl35493|Streptophyta
Evalue1.23e-94
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota,37HWG@33090|Viridiplantae,3GH58@35493|Streptophyta,4JCZD@91835|fabids
Descriptionreductase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7126Gchil7126Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 289507..290607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7126.t1.stop1Gchil7126.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 289507..289509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7126.t1.CDS1Gchil7126.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 289507..290607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7126.t1.exon1Gchil7126.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 289507..290607 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7126.t1.start1Gchil7126.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 290605..290607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7126.t1Gchil7126.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 289507..290607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7126.t1 ID=Gchil7126.t1|Name=Gchil7126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=367bp
MDNIALGTQGLLVSKLGFGCMGLTTAYGPKLPDDQIVALLEKAASLGVTF
WDTANIYAFPDFWRLLRLSSPVVCQEEIISHAIEKVGRDNITIATKTGIR
LSVFPKLSLKADGDPAFIRQQCEDSLRRLNVSTIDLFYLHRIDPDIPIEI
TMTEMSKLVQEGKVRYVGLSEASPNVIERAHKIHPITAVQLEYSLWCRGI
EEEIIPLCERLGIGIVAYSPLGRGFFGGASRSALSKGDFRANQARFQGEA
KKTNEQMLEEMQKIAEGKNVTTAQLALAWVHAQRYRLGSAGLVAIPGTTK
EGNLISNVESLNLELSVDDIAALEEAVPWKEVQGERYEGESSQWETLVNR
ELSAQEAERIGVSPQQ*
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spliced messenger RNA

>Gchil7126.t1 ID=Gchil7126.t1|Name=Gchil7126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004441_pilon:289507..290607- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACATAGCGTTGGGCACTCAGGGTTTGCTGGTATCAAAGCTGGG
CTTTGGATGCATGGGACTCACCACAGCATACGGACCGAAACTCCCTGACG
ATCAGATCGTCGCCTTACTCGAGAAAGCCGCGTCCTTGGGCGTTACTTTT
TGGGATACCGCAAACATTTACGCCTTTCCAGACTTTTGGCGCTTGTTGCG
ACTTTCTTCTCCTGTGGTGTGTCAGGAGGAAATTATCAGCCATGCCATTG
AGAAAGTCGGCCGAGACAACATTACAATTGCCACCAAGACAGGAATTCGT
TTGAGCGTTTTCCCTAAACTATCGCTCAAAGCAGACGGCGATCCTGCCTT
TATTCGTCAACAATGCGAGGATTCGTTGAGGCGACTCAATGTATCTACAA
TTGATCTGTTTTATCTTCATCGAATCGACCCTGATATTCCGATAGAAATC
ACCATGACTGAGATGAGTAAATTGGTTCAGGAAGGAAAAGTACGCTACGT
AGGGTTGTCAGAAGCGTCGCCAAACGTCATAGAACGGGCGCACAAAATAC
ATCCCATCACCGCTGTGCAACTTGAATACTCGCTGTGGTGTCGTGGAATC
GAGGAGGAGATCATTCCACTGTGTGAACGATTAGGAATTGGAATTGTTGC
ATACTCGCCGTTGGGTCGCGGTTTCTTTGGAGGCGCCTCCCGCAGCGCGC
TTTCCAAAGGCGACTTCAGGGCAAACCAGGCTCGTTTCCAAGGTGAAGCT
AAAAAAACCAACGAACAAATGCTGGAGGAGATGCAAAAGATTGCTGAGGG
AAAAAATGTGACCACTGCTCAATTGGCATTGGCATGGGTGCACGCACAGC
GATATCGTTTGGGCTCAGCCGGTCTCGTGGCCATTCCTGGCACCACAAAA
GAAGGAAATTTGATCAGTAATGTCGAAAGCCTGAATCTGGAGCTTTCTGT
GGACGACATTGCAGCCCTGGAAGAAGCTGTACCTTGGAAGGAAGTGCAAG
GTGAAAGGTATGAAGGGGAATCTTCCCAATGGGAGACGCTGGTTAATCGC
GAGTTATCGGCACAAGAAGCGGAGCGCATTGGTGTTTCTCCACAGCAATG
A
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protein sequence of Gchil7126.t1

>Gchil7126.t1 ID=Gchil7126.t1|Name=Gchil7126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=367bp
MDNIALGTQGLLVSKLGFGCMGLTTAYGPKLPDDQIVALLEKAASLGVTF
WDTANIYAFPDFWRLLRLSSPVVCQEEIISHAIEKVGRDNITIATKTGIR
LSVFPKLSLKADGDPAFIRQQCEDSLRRLNVSTIDLFYLHRIDPDIPIEI
TMTEMSKLVQEGKVRYVGLSEASPNVIERAHKIHPITAVQLEYSLWCRGI
EEEIIPLCERLGIGIVAYSPLGRGFFGGASRSALSKGDFRANQARFQGEA
KKTNEQMLEEMQKIAEGKNVTTAQLALAWVHAQRYRLGSAGLVAIPGTTK
EGNLISNVESLNLELSVDDIAALEEAVPWKEVQGERYEGESSQWETLVNR
ELSAQEAERIGVSPQQ*
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mRNA from alignment at tig00004441_pilon:289507..290607-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7126.t1 ID=Gchil7126.t1|Name=Gchil7126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00004441_pilon:289507..290607- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAACATAGCGTTGGGCACTCAGGGTTTGCTGGTATCAAAGCTGGG
CTTTGGATGCATGGGACTCACCACAGCATACGGACCGAAACTCCCTGACG
ATCAGATCGTCGCCTTACTCGAGAAAGCCGCGTCCTTGGGCGTTACTTTT
TGGGATACCGCAAACATTTACGCCTTTCCAGACTTTTGGCGCTTGTTGCG
ACTTTCTTCTCCTGTGGTGTGTCAGGAGGAAATTATCAGCCATGCCATTG
AGAAAGTCGGCCGAGACAACATTACAATTGCCACCAAGACAGGAATTCGT
TTGAGCGTTTTCCCTAAACTATCGCTCAAAGCAGACGGCGATCCTGCCTT
TATTCGTCAACAATGCGAGGATTCGTTGAGGCGACTCAATGTATCTACAA
TTGATCTGTTTTATCTTCATCGAATCGACCCTGATATTCCGATAGAAATC
ACCATGACTGAGATGAGTAAATTGGTTCAGGAAGGAAAAGTACGCTACGT
AGGGTTGTCAGAAGCGTCGCCAAACGTCATAGAACGGGCGCACAAAATAC
ATCCCATCACCGCTGTGCAACTTGAATACTCGCTGTGGTGTCGTGGAATC
GAGGAGGAGATCATTCCACTGTGTGAACGATTAGGAATTGGAATTGTTGC
ATACTCGCCGTTGGGTCGCGGTTTCTTTGGAGGCGCCTCCCGCAGCGCGC
TTTCCAAAGGCGACTTCAGGGCAAACCAGGCTCGTTTCCAAGGTGAAGCT
AAAAAAACCAACGAACAAATGCTGGAGGAGATGCAAAAGATTGCTGAGGG
AAAAAATGTGACCACTGCTCAATTGGCATTGGCATGGGTGCACGCACAGC
GATATCGTTTGGGCTCAGCCGGTCTCGTGGCCATTCCTGGCACCACAAAA
GAAGGAAATTTGATCAGTAATGTCGAAAGCCTGAATCTGGAGCTTTCTGT
GGACGACATTGCAGCCCTGGAAGAAGCTGTACCTTGGAAGGAAGTGCAAG
GTGAAAGGTATGAAGGGGAATCTTCCCAATGGGAGACGCTGGTTAATCGC
GAGTTATCGGCACAAGAAGCGGAGCGCATTGGTGTTTCTCCACAGCAATG
A
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Coding sequence (CDS) from alignment at tig00004441_pilon:289507..290607-

>Gchil7126.t1 ID=Gchil7126.t1|Name=Gchil7126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00004441_pilon:289507..290607- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAACATAGCGTTGGGCACTCAGGGTTTGCTGGTATCAAAGCTGGG
CTTTGGATGCATGGGACTCACCACAGCATACGGACCGAAACTCCCTGACG
ATCAGATCGTCGCCTTACTCGAGAAAGCCGCGTCCTTGGGCGTTACTTTT
TGGGATACCGCAAACATTTACGCCTTTCCAGACTTTTGGCGCTTGTTGCG
ACTTTCTTCTCCTGTGGTGTGTCAGGAGGAAATTATCAGCCATGCCATTG
AGAAAGTCGGCCGAGACAACATTACAATTGCCACCAAGACAGGAATTCGT
TTGAGCGTTTTCCCTAAACTATCGCTCAAAGCAGACGGCGATCCTGCCTT
TATTCGTCAACAATGCGAGGATTCGTTGAGGCGACTCAATGTATCTACAA
TTGATCTGTTTTATCTTCATCGAATCGACCCTGATATTCCGATAGAAATC
ACCATGACTGAGATGAGTAAATTGGTTCAGGAAGGAAAAGTACGCTACGT
AGGGTTGTCAGAAGCGTCGCCAAACGTCATAGAACGGGCGCACAAAATAC
ATCCCATCACCGCTGTGCAACTTGAATACTCGCTGTGGTGTCGTGGAATC
GAGGAGGAGATCATTCCACTGTGTGAACGATTAGGAATTGGAATTGTTGC
ATACTCGCCGTTGGGTCGCGGTTTCTTTGGAGGCGCCTCCCGCAGCGCGC
TTTCCAAAGGCGACTTCAGGGCAAACCAGGCTCGTTTCCAAGGTGAAGCT
AAAAAAACCAACGAACAAATGCTGGAGGAGATGCAAAAGATTGCTGAGGG
AAAAAATGTGACCACTGCTCAATTGGCATTGGCATGGGTGCACGCACAGC
GATATCGTTTGGGCTCAGCCGGTCTCGTGGCCATTCCTGGCACCACAAAA
GAAGGAAATTTGATCAGTAATGTCGAAAGCCTGAATCTGGAGCTTTCTGT
GGACGACATTGCAGCCCTGGAAGAAGCTGTACCTTGGAAGGAAGTGCAAG
GTGAAAGGTATGAAGGGGAATCTTCCCAATGGGAGACGCTGGTTAATCGC
GAGTTATCGGCACAAGAAGCGGAGCGCATTGGTGTTTCTCCACAGCAATG
A
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