Gchil7103.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7103.t1
Unique Name	Gchil7103.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	680

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:138086..140125 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI39804
PFAMs	Pkinase
Max annot lvl	4776\|Peronosporales
Evalue	3.95e-53
EggNOG OGs	KOG0581@1\|root,KOG0581@2759\|Eukaryota,3Q9AB@4776\|Peronosporales
Description	Serine/Threonine protein kinases, catalytic domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7103	Gchil7103	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 138086..140125 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7103.t1.start1	Gchil7103.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 138086..138088 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7103.t1.CDS1	Gchil7103.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 138086..140125 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7103.t1.exon1	Gchil7103.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 138086..140125 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7103.t1.stop1	Gchil7103.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 140123..140125 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7103.t1	Gchil7103.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 138086..140125 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:138086..140125+
coding sequence from alignment at tig00004441_pilon:138086..140125+

mRNA sequence

>Gchil7103.t1 ID=Gchil7103.t1|Name=Gchil7103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=680bp
MGLFNRKASSRYTGQTEKGSQGGLSPRQQSSSHRKSRLNDLFSDGKSSNG
MPGTPVTGTHHFQNHVSAPTVALDDFVQDSKQPSEVEGFSHVNQVNDGDR
NGITSDRRDRDRSNSTTNGQDRDTVSMLARRNTIKRSVSRKIARSESRRQ
LLNIRDSSLHEDRTANTMMSRSKSSLVSRHSSINRSLDRSSSIKASVNEK
KFSIPMSRSSSFSARLRALSSNDQLSTEVKVDQSLNAMGVLGLTDEVDEE
LELDHSSLREVSQMGEIRADENFDLMMSDAVVDNSNAPEQFLGEQKSKTA
KSRKRPPPLLAKIEVNSVTNSAADWPSGGHFGSDGGFVTGGFRITAEGVL
DKPLIATRQDSEDNNEGGVPQSHRTIVIAKGLKEFRTGPTIGTGAAGRVY
IAEHIPSRTPMAMKVVNVYDKHRRNQLLKELETLSTYISRYLVRFYGAFY
DGSGAVHIALEYMDHGCLSTFIQRVGPIPERVVQMIAHDCLRGLRFLHRH
HVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYMS
PERLNGTNYTYASDIWALGVSIMECLLGKYPFDRPQNYFDYIEATTTINV
LSGFKRECAKFSPEVRDFVERCTYTDPKRRATVAELMEHPWLKELIRDTE
LFGSWLDECRIISMRPTRSQTSGRKGIVG*

spliced messenger RNA

>Gchil7103.t1 ID=Gchil7103.t1|Name=Gchil7103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2040bp|location=Sequence derived from alignment at tig00004441_pilon:138086..140125+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTGTTCAATCGTAAGGCTTCCTCGAGATATACTGGGCAAACAGA
AAAGGGCAGTCAAGGTGGCCTTTCTCCGCGACAACAGTCCTCGTCACATC
GAAAGTCCAGACTAAATGATTTGTTTTCTGATGGAAAGTCAAGCAATGGG
ATGCCTGGAACGCCCGTAACTGGTACCCACCATTTCCAGAATCATGTCTC
AGCACCGACCGTAGCGTTGGACGACTTTGTTCAAGATTCGAAGCAACCTT
CTGAAGTGGAAGGTTTTTCGCATGTGAATCAAGTCAATGATGGAGACAGG
AATGGCATAACTTCTGATCGAAGGGACAGAGACCGTTCCAATTCAACCAC
TAATGGCCAAGACCGAGATACAGTTTCAATGCTGGCAAGGCGAAACACTA
TCAAACGTTCAGTATCGAGAAAGATCGCACGGTCCGAAAGTCGAAGGCAG
TTGTTGAATATCAGGGATAGTAGTCTTCACGAAGACCGTACTGCGAACAC
TATGATGAGCCGCTCTAAGTCTTCCCTGGTCTCAAGGCACAGCTCTATCA
ACCGCAGTCTTGACCGCTCGAGCTCCATCAAAGCCAGCGTAAATGAGAAG
AAGTTTTCTATACCAATGTCTCGGTCAAGCTCATTCTCTGCACGTTTGCG
GGCTTTAAGTTCGAATGACCAGTTGTCCACCGAAGTTAAAGTCGATCAAT
CTTTGAATGCAATGGGTGTCTTGGGGCTAACCGATGAAGTCGATGAAGAA
CTGGAACTAGATCATTCCAGCTTGCGAGAAGTTTCTCAAATGGGGGAGAT
AAGAGCTGACGAGAATTTTGATTTGATGATGAGTGATGCTGTTGTGGATA
ACTCTAATGCACCTGAACAATTCTTAGGCGAGCAGAAGAGTAAAACAGCC
AAATCCAGAAAGCGGCCTCCCCCCCTTCTGGCAAAAATAGAGGTGAACTC
TGTGACAAACTCTGCAGCAGATTGGCCGAGCGGGGGGCACTTCGGTAGTG
ATGGGGGTTTCGTCACTGGTGGTTTCCGGATCACCGCTGAAGGTGTGCTT
GACAAGCCTCTTATCGCTACACGTCAGGATTCAGAAGATAACAACGAAGG
TGGAGTTCCACAATCGCATCGAACGATAGTTATTGCAAAGGGTTTGAAAG
AGTTTCGAACGGGCCCCACAATCGGAACTGGAGCCGCCGGAAGGGTGTAC
ATTGCAGAGCACATCCCTTCCAGGACGCCCATGGCGATGAAAGTAGTCAA
TGTCTACGATAAACATCGCAGGAACCAACTGCTGAAAGAATTGGAGACGT
TATCGACTTATATCAGCCGATATCTAGTCAGATTTTATGGCGCCTTCTAT
GACGGCTCAGGGGCTGTACACATTGCTCTCGAGTACATGGACCATGGATG
TCTATCCACATTCATTCAGCGTGTTGGACCAATACCTGAACGGGTTGTAC
AGATGATTGCTCACGACTGCCTTAGGGGCCTTCGCTTTTTGCATCGGCAT
CATGTGCTTCACCGTGATTTCAAGACGGCTAACATCCTTTTGTCTCGTCG
ATTATGTCGAGCGAAACTGAGCGACTTCGGTCTGGCTCGAGATTTGAACC
CTGGTGTTTCAAAAGTTGATACATTTGTCGGAACTGTCGCATATATGTCA
CCTGAGCGTCTGAACGGCACTAACTACACGTACGCTTCAGATATTTGGGC
TCTTGGGGTTTCGATCATGGAATGCCTTCTAGGAAAGTATCCATTTGATC
GACCGCAAAACTACTTTGATTATATTGAGGCCACAACGACAATTAACGTT
CTCAGTGGGTTCAAGAGAGAATGTGCAAAATTCTCTCCGGAGGTGAGAGA
TTTTGTGGAAAGGTGTACCTACACAGACCCCAAGAGGAGGGCGACCGTTG
CGGAGCTAATGGAGCATCCGTGGTTGAAGGAATTGATAAGGGATACTGAG
CTTTTTGGGTCGTGGTTGGATGAATGTAGGATTATATCGATGCGCCCAAC
TCGCTCACAGACCTCAGGAAGGAAGGGAATAGTAGGATAG

protein sequence of Gchil7103.t1

>Gchil7103.t1 ID=Gchil7103.t1|Name=Gchil7103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=680bp
MGLFNRKASSRYTGQTEKGSQGGLSPRQQSSSHRKSRLNDLFSDGKSSNG
MPGTPVTGTHHFQNHVSAPTVALDDFVQDSKQPSEVEGFSHVNQVNDGDR
NGITSDRRDRDRSNSTTNGQDRDTVSMLARRNTIKRSVSRKIARSESRRQ
LLNIRDSSLHEDRTANTMMSRSKSSLVSRHSSINRSLDRSSSIKASVNEK
KFSIPMSRSSSFSARLRALSSNDQLSTEVKVDQSLNAMGVLGLTDEVDEE
LELDHSSLREVSQMGEIRADENFDLMMSDAVVDNSNAPEQFLGEQKSKTA
KSRKRPPPLLAKIEVNSVTNSAADWPSGGHFGSDGGFVTGGFRITAEGVL
DKPLIATRQDSEDNNEGGVPQSHRTIVIAKGLKEFRTGPTIGTGAAGRVY
IAEHIPSRTPMAMKVVNVYDKHRRNQLLKELETLSTYISRYLVRFYGAFY
DGSGAVHIALEYMDHGCLSTFIQRVGPIPERVVQMIAHDCLRGLRFLHRH
HVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYMS
PERLNGTNYTYASDIWALGVSIMECLLGKYPFDRPQNYFDYIEATTTINV
LSGFKRECAKFSPEVRDFVERCTYTDPKRRATVAELMEHPWLKELIRDTE
LFGSWLDECRIISMRPTRSQTSGRKGIVG*

mRNA from alignment at tig00004441_pilon:138086..140125+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7103.t1 ID=Gchil7103.t1|Name=Gchil7103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2040bp|location=Sequence derived from alignment at tig00004441_pilon:138086..140125+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCTGTTCAATCGTAAGGCTTCCTCGAGATATACTGGGCAAACAGA
AAAGGGCAGTCAAGGTGGCCTTTCTCCGCGACAACAGTCCTCGTCACATC
GAAAGTCCAGACTAAATGATTTGTTTTCTGATGGAAAGTCAAGCAATGGG
ATGCCTGGAACGCCCGTAACTGGTACCCACCATTTCCAGAATCATGTCTC
AGCACCGACCGTAGCGTTGGACGACTTTGTTCAAGATTCGAAGCAACCTT
CTGAAGTGGAAGGTTTTTCGCATGTGAATCAAGTCAATGATGGAGACAGG
AATGGCATAACTTCTGATCGAAGGGACAGAGACCGTTCCAATTCAACCAC
TAATGGCCAAGACCGAGATACAGTTTCAATGCTGGCAAGGCGAAACACTA
TCAAACGTTCAGTATCGAGAAAGATCGCACGGTCCGAAAGTCGAAGGCAG
TTGTTGAATATCAGGGATAGTAGTCTTCACGAAGACCGTACTGCGAACAC
TATGATGAGCCGCTCTAAGTCTTCCCTGGTCTCAAGGCACAGCTCTATCA
ACCGCAGTCTTGACCGCTCGAGCTCCATCAAAGCCAGCGTAAATGAGAAG
AAGTTTTCTATACCAATGTCTCGGTCAAGCTCATTCTCTGCACGTTTGCG
GGCTTTAAGTTCGAATGACCAGTTGTCCACCGAAGTTAAAGTCGATCAAT
CTTTGAATGCAATGGGTGTCTTGGGGCTAACCGATGAAGTCGATGAAGAA
CTGGAACTAGATCATTCCAGCTTGCGAGAAGTTTCTCAAATGGGGGAGAT
AAGAGCTGACGAGAATTTTGATTTGATGATGAGTGATGCTGTTGTGGATA
ACTCTAATGCACCTGAACAATTCTTAGGCGAGCAGAAGAGTAAAACAGCC
AAATCCAGAAAGCGGCCTCCCCCCCTTCTGGCAAAAATAGAGGTGAACTC
TGTGACAAACTCTGCAGCAGATTGGCCGAGCGGGGGGCACTTCGGTAGTG
ATGGGGGTTTCGTCACTGGTGGTTTCCGGATCACCGCTGAAGGTGTGCTT
GACAAGCCTCTTATCGCTACACGTCAGGATTCAGAAGATAACAACGAAGG
TGGAGTTCCACAATCGCATCGAACGATAGTTATTGCAAAGGGTTTGAAAG
AGTTTCGAACGGGCCCCACAATCGGAACTGGAGCCGCCGGAAGGGTGTAC
ATTGCAGAGCACATCCCTTCCAGGACGCCCATGGCGATGAAAGTAGTCAA
TGTCTACGATAAACATCGCAGGAACCAACTGCTGAAAGAATTGGAGACGT
TATCGACTTATATCAGCCGATATCTAGTCAGATTTTATGGCGCCTTCTAT
GACGGCTCAGGGGCTGTACACATTGCTCTCGAGTACATGGACCATGGATG
TCTATCCACATTCATTCAGCGTGTTGGACCAATACCTGAACGGGTTGTAC
AGATGATTGCTCACGACTGCCTTAGGGGCCTTCGCTTTTTGCATCGGCAT
CATGTGCTTCACCGTGATTTCAAGACGGCTAACATCCTTTTGTCTCGTCG
ATTATGTCGAGCGAAACTGAGCGACTTCGGTCTGGCTCGAGATTTGAACC
CTGGTGTTTCAAAAGTTGATACATTTGTCGGAACTGTCGCATATATGTCA
CCTGAGCGTCTGAACGGCACTAACTACACGTACGCTTCAGATATTTGGGC
TCTTGGGGTTTCGATCATGGAATGCCTTCTAGGAAAGTATCCATTTGATC
GACCGCAAAACTACTTTGATTATATTGAGGCCACAACGACAATTAACGTT
CTCAGTGGGTTCAAGAGAGAATGTGCAAAATTCTCTCCGGAGGTGAGAGA
TTTTGTGGAAAGGTGTACCTACACAGACCCCAAGAGGAGGGCGACCGTTG
CGGAGCTAATGGAGCATCCGTGGTTGAAGGAATTGATAAGGGATACTGAG
CTTTTTGGGTCGTGGTTGGATGAATGTAGGATTATATCGATGCGCCCAAC
TCGCTCACAGACCTCAGGAAGGAAGGGAATAGTAGGATAG

Coding sequence (CDS) from alignment at tig00004441_pilon:138086..140125+

>Gchil7103.t1 ID=Gchil7103.t1|Name=Gchil7103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2040bp|location=Sequence derived from alignment at tig00004441_pilon:138086..140125+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCTGTTCAATCGTAAGGCTTCCTCGAGATATACTGGGCAAACAGA
AAAGGGCAGTCAAGGTGGCCTTTCTCCGCGACAACAGTCCTCGTCACATC
GAAAGTCCAGACTAAATGATTTGTTTTCTGATGGAAAGTCAAGCAATGGG
ATGCCTGGAACGCCCGTAACTGGTACCCACCATTTCCAGAATCATGTCTC
AGCACCGACCGTAGCGTTGGACGACTTTGTTCAAGATTCGAAGCAACCTT
CTGAAGTGGAAGGTTTTTCGCATGTGAATCAAGTCAATGATGGAGACAGG
AATGGCATAACTTCTGATCGAAGGGACAGAGACCGTTCCAATTCAACCAC
TAATGGCCAAGACCGAGATACAGTTTCAATGCTGGCAAGGCGAAACACTA
TCAAACGTTCAGTATCGAGAAAGATCGCACGGTCCGAAAGTCGAAGGCAG
TTGTTGAATATCAGGGATAGTAGTCTTCACGAAGACCGTACTGCGAACAC
TATGATGAGCCGCTCTAAGTCTTCCCTGGTCTCAAGGCACAGCTCTATCA
ACCGCAGTCTTGACCGCTCGAGCTCCATCAAAGCCAGCGTAAATGAGAAG
AAGTTTTCTATACCAATGTCTCGGTCAAGCTCATTCTCTGCACGTTTGCG
GGCTTTAAGTTCGAATGACCAGTTGTCCACCGAAGTTAAAGTCGATCAAT
CTTTGAATGCAATGGGTGTCTTGGGGCTAACCGATGAAGTCGATGAAGAA
CTGGAACTAGATCATTCCAGCTTGCGAGAAGTTTCTCAAATGGGGGAGAT
AAGAGCTGACGAGAATTTTGATTTGATGATGAGTGATGCTGTTGTGGATA
ACTCTAATGCACCTGAACAATTCTTAGGCGAGCAGAAGAGTAAAACAGCC
AAATCCAGAAAGCGGCCTCCCCCCCTTCTGGCAAAAATAGAGGTGAACTC
TGTGACAAACTCTGCAGCAGATTGGCCGAGCGGGGGGCACTTCGGTAGTG
ATGGGGGTTTCGTCACTGGTGGTTTCCGGATCACCGCTGAAGGTGTGCTT
GACAAGCCTCTTATCGCTACACGTCAGGATTCAGAAGATAACAACGAAGG
TGGAGTTCCACAATCGCATCGAACGATAGTTATTGCAAAGGGTTTGAAAG
AGTTTCGAACGGGCCCCACAATCGGAACTGGAGCCGCCGGAAGGGTGTAC
ATTGCAGAGCACATCCCTTCCAGGACGCCCATGGCGATGAAAGTAGTCAA
TGTCTACGATAAACATCGCAGGAACCAACTGCTGAAAGAATTGGAGACGT
TATCGACTTATATCAGCCGATATCTAGTCAGATTTTATGGCGCCTTCTAT
GACGGCTCAGGGGCTGTACACATTGCTCTCGAGTACATGGACCATGGATG
TCTATCCACATTCATTCAGCGTGTTGGACCAATACCTGAACGGGTTGTAC
AGATGATTGCTCACGACTGCCTTAGGGGCCTTCGCTTTTTGCATCGGCAT
CATGTGCTTCACCGTGATTTCAAGACGGCTAACATCCTTTTGTCTCGTCG
ATTATGTCGAGCGAAACTGAGCGACTTCGGTCTGGCTCGAGATTTGAACC
CTGGTGTTTCAAAAGTTGATACATTTGTCGGAACTGTCGCATATATGTCA
CCTGAGCGTCTGAACGGCACTAACTACACGTACGCTTCAGATATTTGGGC
TCTTGGGGTTTCGATCATGGAATGCCTTCTAGGAAAGTATCCATTTGATC
GACCGCAAAACTACTTTGATTATATTGAGGCCACAACGACAATTAACGTT
CTCAGTGGGTTCAAGAGAGAATGTGCAAAATTCTCTCCGGAGGTGAGAGA
TTTTGTGGAAAGGTGTACCTACACAGACCCCAAGAGGAGGGCGACCGTTG
CGGAGCTAATGGAGCATCCGTGGTTGAAGGAATTGATAAGGGATACTGAG
CTTTTTGGGTCGTGGTTGGATGAATGTAGGATTATATCGATGCGCCCAAC
TCGCTCACAGACCTCAGGAAGGAAGGGAATAGTAGGATAG