Gchil7143.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7143.t1
Unique NameGchil7143.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length447
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:342004..343344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7143Gchil7143Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 342004..343344 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7143.t1.start1Gchil7143.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 342004..342006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7143.t1.CDS1Gchil7143.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 342004..343344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7143.t1.exon1Gchil7143.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 342004..343344 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7143.t1.stop1Gchil7143.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 343342..343344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7143.t1Gchil7143.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 342004..343344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp
MSATPPAGPSPSPSPSPSPSPSPSPSPSLLALPRDVLLAVFARLNPPQLA
AMSQLSTRAHALVSDPAVWRAAACRHLADANSRPSSPAALASLADRLVCR
WWLLTGVFVAGMPVHRRRGFVDVRARGGREMPVTPDAPTTCYVMGDPCLD
QLLWPLPVVHLSFFIDPNGPFPMDGMTARLIHAVEKPPAAPVSQQSAPHI
PHVPPFSLSSSLPSHPLPPSQAPPSPASPPSHAAPPYTSLTDIPAPLSIT
QQKTPARVTISINNNVILKAFQPDTPHFSVLDISIPHHLLYTKPRVNVLS
VELNKHPNEAYWLKEVSIMPSFLPAPVVDKASLIFPRNVAHPPVPEAPLM
HLPLLPALRQPPESHPLPSSPPRHRRPSPRHASHSHVHTPPRSPHRERDL
QRRVAHNHTARNKRPRHQPFPKSSRHMYHQNNYRSPRGSPHHAPKF*
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spliced messenger RNA

>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00004441_pilon:342004..343344+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCCACACCCCCCGCCGGCccgtcgccgtcgccgtcgccgtcgcc
gtcgccgtcgccgtcgccgtcgccgtcgccgtcgcTTCTCGCGCTGCCGC
GCGACGTGCTGCTTGCCGTCTTCGCGCGTCTCAACCCGCCGCAGCTGGCC
GCCATGTCGCAGCTCAGCACGCGCGCCCACGCGCTCGTGTCCGACCCAGC
TGTGTGGCGCGCCGCCGCATGTCGTCATCTCGCCGACGCTAATTCCCGTC
CCAGCTCGCCCGCCGCCCTGGCCTCGCTTGCCGACCGTCTCGTGTGTCGT
TGGTGGCTGCTCACCGGCGTCTTTGTCGCCGGCATGCCCGTTCATCGTCG
TCGCGGCTTTGTTGACGTGCGCGCTCGCGGCGGTCGGGAGATGCCTGTCA
CGCCTGACGCTCCTACCACGTGCTATGTTATGGGCGATCCGTGTCTTGAT
CAACTGCTTTGGCCGCTGCCTGTCGTGCATCTCTCCTTCTTTATTGATCC
AAATGGTCCGTTTCCTATGGACGGTATGACTGCTCGTCTCATTCACGCCG
TCGAGAAACCTCCCGCTGCCCCTGTTTCGCAACAGTCTGCTCCACACATA
CCCCACGTCCCGCCGTTTTCTCTTTCCTCCTCTTTGCCTTCTCACCCGCT
GCCGCCCTCTCAAGCACCCCCGTCCCCCGCTTCGCCCCCTTCGCACGCCG
CCCCGCCCTACACGTCGCTCACCGACATTCCCGCCCCACTCTCCATCACC
CAGCAAAAGACACCGGCGCGCGtcaccatcagcatcaacaacaacgtcat
cctcaaAGCCTTCCAACCGGACACGCCTCACTTTTCCGTCCTCGACATCT
CCATCCCGCACCACCTGCTCTACACTAAACCGCGCGTCAACGTTTTGTCC
GTTGAGCTCAACAAGCACCCTAACGAAGCCTACTGGCTCAAGGAGGTTTC
TATCATGCCCTCCTTTCTACCCGCCCCCGTCGTCGACAAGGCCTCTCTCA
TTTTCCCCAGGAACGTGGCACACCCGCCCGTCCCCGAGGCACCGCTCATG
CATCTGCCTCTGCTTCCCGCGCTCCGTCAGCCGCCAGAATCGCATCCCCT
CCCCTCCAGCCCGCCGCGCCACCGTCGCCCCTCGCCCAGGCACGCGTCCC
ACTCGCACGTGCACACACCGCCGCGTTCGCCGCACAGAGAGCGCGATTTG
CAACGCAGAGTCGCTCACAATCACACTGCTCGTAACAAACGTCCCAGGCA
TCAACCTTTCCCCAAATCCTCGCGCCACATGTACCATCAGAATAACTACC
GCAGCCCGCGCGGCTCGCCGCATCATGCGCCAAAGTTCTGA
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protein sequence of Gchil7143.t1

>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=447bp
MSATPPAGPSPSPSPSPSPSPSPSPSPSLLALPRDVLLAVFARLNPPQLA
AMSQLSTRAHALVSDPAVWRAAACRHLADANSRPSSPAALASLADRLVCR
WWLLTGVFVAGMPVHRRRGFVDVRARGGREMPVTPDAPTTCYVMGDPCLD
QLLWPLPVVHLSFFIDPNGPFPMDGMTARLIHAVEKPPAAPVSQQSAPHI
PHVPPFSLSSSLPSHPLPPSQAPPSPASPPSHAAPPYTSLTDIPAPLSIT
QQKTPARVTISINNNVILKAFQPDTPHFSVLDISIPHHLLYTKPRVNVLS
VELNKHPNEAYWLKEVSIMPSFLPAPVVDKASLIFPRNVAHPPVPEAPLM
HLPLLPALRQPPESHPLPSSPPRHRRPSPRHASHSHVHTPPRSPHRERDL
QRRVAHNHTARNKRPRHQPFPKSSRHMYHQNNYRSPRGSPHHAPKF*
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mRNA from alignment at tig00004441_pilon:342004..343344+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at tig00004441_pilon:342004..343344+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCCACACCCCCCGCCGGCccgtcgccgtcgccgtcgccgtcgcc
gtcgccgtcgccgtcgccgtcgccgtcgccgtcgcTTCTCGCGCTGCCGC
GCGACGTGCTGCTTGCCGTCTTCGCGCGTCTCAACCCGCCGCAGCTGGCC
GCCATGTCGCAGCTCAGCACGCGCGCCCACGCGCTCGTGTCCGACCCAGC
TGTGTGGCGCGCCGCCGCATGTCGTCATCTCGCCGACGCTAATTCCCGTC
CCAGCTCGCCCGCCGCCCTGGCCTCGCTTGCCGACCGTCTCGTGTGTCGT
TGGTGGCTGCTCACCGGCGTCTTTGTCGCCGGCATGCCCGTTCATCGTCG
TCGCGGCTTTGTTGACGTGCGCGCTCGCGGCGGTCGGGAGATGCCTGTCA
CGCCTGACGCTCCTACCACGTGCTATGTTATGGGCGATCCGTGTCTTGAT
CAACTGCTTTGGCCGCTGCCTGTCGTGCATCTCTCCTTCTTTATTGATCC
AAATGGTCCGTTTCCTATGGACGGTATGACTGCTCGTCTCATTCACGCCG
TCGAGAAACCTCCCGCTGCCCCTGTTTCGCAACAGTCTGCTCCACACATA
CCCCACGTCCCGCCGTTTTCTCTTTCCTCCTCTTTGCCTTCTCACCCGCT
GCCGCCCTCTCAAGCACCCCCGTCCCCCGCTTCGCCCCCTTCGCACGCCG
CCCCGCCCTACACGTCGCTCACCGACATTCCCGCCCCACTCTCCATCACC
CAGCAAAAGACACCGGCGCGCGtcaccatcagcatcaacaacaacgtcat
cctcaaAGCCTTCCAACCGGACACGCCTCACTTTTCCGTCCTCGACATCT
CCATCCCGCACCACCTGCTCTACACTAAACCGCGCGTCAACGTTTTGTCC
GTTGAGCTCAACAAGCACCCTAACGAAGCCTACTGGCTCAAGGAGGTTTC
TATCATGCCCTCCTTTCTACCCGCCCCCGTCGTCGACAAGGCCTCTCTCA
TTTTCCCCAGGAACGTGGCACACCCGCCCGTCCCCGAGGCACCGCTCATG
CATCTGCCTCTGCTTCCCGCGCTCCGTCAGCCGCCAGAATCGCATCCCCT
CCCCTCCAGCCCGCCGCGCCACCGTCGCCCCTCGCCCAGGCACGCGTCCC
ACTCGCACGTGCACACACCGCCGCGTTCGCCGCACAGAGAGCGCGATTTG
CAACGCAGAGTCGCTCACAATCACACTGCTCGTAACAAACGTCCCAGGCA
TCAACCTTTCCCCAAATCCTCGCGCCACATGTACCATCAGAATAACTACC
GCAGCCCGCGCGGCTCGCCGCATCATGCGCCAAAGTTCTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:342004..343344+

>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1341bp|location=Sequence derived from alignment at tig00004441_pilon:342004..343344+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCCACACCCCCCGCCGGCccgtcgccgtcgccgtcgccgtcgcc
gtcgccgtcgccgtcgccgtcgccgtcgccgtcgcTTCTCGCGCTGCCGC
GCGACGTGCTGCTTGCCGTCTTCGCGCGTCTCAACCCGCCGCAGCTGGCC
GCCATGTCGCAGCTCAGCACGCGCGCCCACGCGCTCGTGTCCGACCCAGC
TGTGTGGCGCGCCGCCGCATGTCGTCATCTCGCCGACGCTAATTCCCGTC
CCAGCTCGCCCGCCGCCCTGGCCTCGCTTGCCGACCGTCTCGTGTGTCGT
TGGTGGCTGCTCACCGGCGTCTTTGTCGCCGGCATGCCCGTTCATCGTCG
TCGCGGCTTTGTTGACGTGCGCGCTCGCGGCGGTCGGGAGATGCCTGTCA
CGCCTGACGCTCCTACCACGTGCTATGTTATGGGCGATCCGTGTCTTGAT
CAACTGCTTTGGCCGCTGCCTGTCGTGCATCTCTCCTTCTTTATTGATCC
AAATGGTCCGTTTCCTATGGACGGTATGACTGCTCGTCTCATTCACGCCG
TCGAGAAACCTCCCGCTGCCCCTGTTTCGCAACAGTCTGCTCCACACATA
CCCCACGTCCCGCCGTTTTCTCTTTCCTCCTCTTTGCCTTCTCACCCGCT
GCCGCCCTCTCAAGCACCCCCGTCCCCCGCTTCGCCCCCTTCGCACGCCG
CCCCGCCCTACACGTCGCTCACCGACATTCCCGCCCCACTCTCCATCACC
CAGCAAAAGACACCGGCGCGCGtcaccatcagcatcaacaacaacgtcat
cctcaaAGCCTTCCAACCGGACACGCCTCACTTTTCCGTCCTCGACATCT
CCATCCCGCACCACCTGCTCTACACTAAACCGCGCGTCAACGTTTTGTCC
GTTGAGCTCAACAAGCACCCTAACGAAGCCTACTGGCTCAAGGAGGTTTC
TATCATGCCCTCCTTTCTACCCGCCCCCGTCGTCGACAAGGCCTCTCTCA
TTTTCCCCAGGAACGTGGCACACCCGCCCGTCCCCGAGGCACCGCTCATG
CATCTGCCTCTGCTTCCCGCGCTCCGTCAGCCGCCAGAATCGCATCCCCT
CCCCTCCAGCCCGCCGCGCCACCGTCGCCCCTCGCCCAGGCACGCGTCCC
ACTCGCACGTGCACACACCGCCGCGTTCGCCGCACAGAGAGCGCGATTTG
CAACGCAGAGTCGCTCACAATCACACTGCTCGTAACAAACGTCCCAGGCA
TCAACCTTTCCCCAAATCCTCGCGCCACATGTACCATCAGAATAACTACC
GCAGCCCGCGCGGCTCGCCGCATCATGCGCCAAAGTTCTGA
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