Gchil7143.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil7143.t1
Unique Name	Gchil7143.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	447

Homology

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BLAST of Gchil7143.t1 vs. uniprot
Match: A0A2V3IP35_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP35_9FLOR)

HSP 1 Score: 412 bits (1060), Expect = 4.520e-138
Identity = 251/446 (56.28%), Postives = 292/446 (65.47%), Query Frame = 0

Query:   29 LLALPRDVLLAVFARLNPPQLAAMSQLSTRAHALVSDPAVWRAAACRHLADANSRPSSPAALASLADRLVCRWWLLTGVFVAGMPVHRRRGFVDVRARGGREMPVTPDAPTTCYVMGDPCLDQLLWPLPVVHLSFFIDPNGPFPMDGMTARLIHAVEKPPAAPVSQQSAPHIPHVPPFSLSS---SLP-------SHPLPPSQAPXXXXXXXXXXA--PPYTSLTDIPAPLSITQQKTPARVTISINNNVILKAFQPDTPHFSVLDISIPHHLLYTKPRVNVLSVELNKHPNEAYWLKEVSIMPSFLPAPVVDKASLIFPRNVAH---------PPVPEAPLMHLPLLPALRQPPESHPLPSSPPRHRRPSPRHASH--SHVHT---PPRSP---HRERDLQRRVAHNHTARNKRPRHQPFPKSSRHMYHQNNYRSPRGSPHHAPK 445
            LL LPRDV L +  RL+P +LAA SQL   A  +  D  VWRAAA RHLAD + RP+S A+  +LA +LVCRWWLLTG FVAGMPVHRRRGF+DV ARGG+E  + P++ TTCYVMGDP    L+WP P VHLSFF+D  GPFP+DGM ARLIHA+E P   P++  SA   P   P S +S   S+P       SH  P + AP             PPY SL  +PAP+SI QQ+ P RVTI INNNVILK F+P+ PHFSVLD+SIP HLLY+KPR NVLS+ELNK+PNE YWL+EVSIMPS LPAP VDKASLIFPRN            P V  AP+   P L +LR      P PS+ PR RR    H S   SH+ T   PPRSP   HR RD  RR       R+KR + QPF K+ RHMYH +NYRSPRGS HH PK
Sbjct:   16 LLHLPRDVALNILRRLSPIELAAFSQLCREASRIADDEQVWRAAAARHLADLSVRPTSCASFYALAQKLVCRWWLLTGAFVAGMPVHRRRGFIDVHARGGQERLIHPNSATTCYVMGDPDPTALIWPTPAVHLSFFLDAKGPFPVDGMRARLIHAIENP--KPIAHPSAQSDPASTPTSTTSNPISVPXXXXXXXSHITPTASAPSPVSPHSDMAISPPPYLSLNGVPAPVSIAQQRAPVRVTIKINNNVILKDFRPEAPHFSVLDVSIPTHLLYSKPRANVLSIELNKYPNECYWLREVSIMPSILPAPAVDKASLIFPRNEPQVSTTTSEDQPDV--APVTWPPPL-SLRXXXXXSP-PSNSPRARR---HHHSRQTSHLSTTPHPPRSPPVSHRTRDSPRRAPRMDATRHKRSKQQPFQKAPRHMYHHSNYRSPRGSSHHNPK 452

The following BLAST results are available for this feature:

BLAST of Gchil7143.t1 vs. uniprot

BLAST of Gchil7143.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IP35_9FLOR	4.520e-138	56.28	F-box domain-containing protein n=1 Tax=Gracilario...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 25..103 e-value: 6.9E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..389
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 407..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 390..406
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..446
None	No IPR available	PANTHER	PTHR13037	FORMIN	coord: 6..394
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 30..70 e-value: 9.3E-5 score: 22.2
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 26..72 score: 12.358865
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 14..82

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:342004..343344 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7143.t1	Gchil7143.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004441_pilon 342004..343344 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil7143.t1 ID=Gchil7143.t1|Name=Gchil7143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=447bp
MSATPPAGPSPSPSPSPSPSPSPSPSPSLLALPRDVLLAVFARLNPPQLA
AMSQLSTRAHALVSDPAVWRAAACRHLADANSRPSSPAALASLADRLVCR
WWLLTGVFVAGMPVHRRRGFVDVRARGGREMPVTPDAPTTCYVMGDPCLD
QLLWPLPVVHLSFFIDPNGPFPMDGMTARLIHAVEKPPAAPVSQQSAPHI
PHVPPFSLSSSLPSHPLPPSQAPPSPASPPSHAAPPYTSLTDIPAPLSIT
QQKTPARVTISINNNVILKAFQPDTPHFSVLDISIPHHLLYTKPRVNVLS
VELNKHPNEAYWLKEVSIMPSFLPAPVVDKASLIFPRNVAHPPVPEAPLM
HLPLLPALRQPPESHPLPSSPPRHRRPSPRHASHSHVHTPPRSPHRERDL
QRRVAHNHTARNKRPRHQPFPKSSRHMYHQNNYRSPRGSPHHAPKF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf