Gchil7100.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7100.t1
Unique Name	Gchil7100.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:133959..134855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707349.1
Preferred name	TIF34
PFAMs	WD40
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K03246,ko:K04567
KEGG Reaction	R03658
KEGG Pathway	ko00970,ko03013,map00970,map03013
KEGG Module	M00359,M00360
GOs	GO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Evalue	8.89e-111
EggNOG OGs	KOG0643@1\|root,KOG0643@2759\|Eukaryota
EC	6.1.1.6
Description	translation initiation factor activity
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7100	Gchil7100	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 133959..134855 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7100.t1.start1	Gchil7100.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 133959..133961 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7100.t1.CDS1	Gchil7100.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 133959..134855 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7100.t1.exon1	Gchil7100.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 133959..134855 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7100.t1.stop1	Gchil7100.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 134853..134855 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7100.t1	Gchil7100.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 133959..134855 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:133959..134855+
coding sequence from alignment at tig00004441_pilon:133959..134855+

mRNA sequence

>Gchil7100.t1 ID=Gchil7100.t1|Name=Gchil7100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=299bp
MDKSPTCWRSSNGERIGTYKGHNGAVRDIAITYNTDRVITASADNSAILW
RADNGEKLYQWHFKSPSRAVTFSPGDNYIALATAKLMGQPSLVYIFEHDR
DSSEQNEEPVAILEGHSGTIVTVDWYPTGEYLLTASEDGTVRKWDAETWE
EIDRIEAHKKLITDCQFSSDYTMFISSSKDHTAKLWSFHDFELLKTFSVD
HPVNSASLSPIFSHILLGGGQEASMVTTTTDRQGKFEAKIFHLVYEEELG
RVKGHFGPINTVSFSPDGRMYVSGGEDGFVRLHEFDEEYFVKGREETV*

spliced messenger RNA

>Gchil7100.t1 ID=Gchil7100.t1|Name=Gchil7100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00004441_pilon:133959..134855+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGTCGCCTACATGTTGGCGTTCCAGTAATGGTGAGAGGATTGG
AACATATAAAGGTCACAACGGTGCTGTACGAGATATCGCTATTACCTACA
ATACAGATAGAGTTATAACGGCTTCGGCCGATAACTCCGCAATTCTATGG
CGCGCCGACAATGGCGAGAAGTTGTATCAGTGGCATTTCAAATCTCCATC
TCGTGCCGTAACATTCAGCCCTGGAGATAATTACATTGCACTTGCCACAG
CGAAGCTTATGGGACAACCATCGCTTGTTTACATTTTCGAGCACGATAGG
GATTCGAGTGAGCAAAATGAAGAGCCTGTTGCTATATTGGAAGGGCACAG
TGGAACGATCGTAACGGTTGATTGGTATCCAACGGGCGAATACCTGCTTA
CTGCCTCAGAAGATGGTACGGTTCGAAAGTGGGATGCGGAAACATGGGAA
GAAATCGATCGCATCGAAGCCCACAAGAAACTTATCACCGATTGTCAATT
CTCTTCAGACTACACCATGTTCATTAGTTCTTCGAAGGACCACACTGCCA
AGTTATGGAGCTTCCATGACTTTGAGTTATTGAAGACATTCTCTGTAGAC
CATCCCGTGAACTCTGCATCTTTGTCTCCAATTTTTTCTCACATATTGCT
TGGTGGTGGTCAAGAAGCTAGCATGGTGACAACAACAACTGATCGACAAG
GAAAGTTTGAAGCGAAAATCTTTCACCTCGTGTACGAAGAGGAGCTTGGA
AGAGTCAAGGGGCATTTCGGCCCTATCAATACTGTCTCATTTTCGCCTGA
CGGACGGATGTACGTGTCAGGAGGAGAGGATGGATTTGTACGGTTACATG
AATTTGACGAGGAGTATTTTGTCAAAGGAAGAGAAGAAACAGTTTGA

protein sequence of Gchil7100.t1

>Gchil7100.t1 ID=Gchil7100.t1|Name=Gchil7100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=299bp
MDKSPTCWRSSNGERIGTYKGHNGAVRDIAITYNTDRVITASADNSAILW
RADNGEKLYQWHFKSPSRAVTFSPGDNYIALATAKLMGQPSLVYIFEHDR
DSSEQNEEPVAILEGHSGTIVTVDWYPTGEYLLTASEDGTVRKWDAETWE
EIDRIEAHKKLITDCQFSSDYTMFISSSKDHTAKLWSFHDFELLKTFSVD
HPVNSASLSPIFSHILLGGGQEASMVTTTTDRQGKFEAKIFHLVYEEELG
RVKGHFGPINTVSFSPDGRMYVSGGEDGFVRLHEFDEEYFVKGREETV*

mRNA from alignment at tig00004441_pilon:133959..134855+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7100.t1 ID=Gchil7100.t1|Name=Gchil7100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00004441_pilon:133959..134855+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGTCGCCTACATGTTGGCGTTCCAGTAATGGTGAGAGGATTGG
AACATATAAAGGTCACAACGGTGCTGTACGAGATATCGCTATTACCTACA
ATACAGATAGAGTTATAACGGCTTCGGCCGATAACTCCGCAATTCTATGG
CGCGCCGACAATGGCGAGAAGTTGTATCAGTGGCATTTCAAATCTCCATC
TCGTGCCGTAACATTCAGCCCTGGAGATAATTACATTGCACTTGCCACAG
CGAAGCTTATGGGACAACCATCGCTTGTTTACATTTTCGAGCACGATAGG
GATTCGAGTGAGCAAAATGAAGAGCCTGTTGCTATATTGGAAGGGCACAG
TGGAACGATCGTAACGGTTGATTGGTATCCAACGGGCGAATACCTGCTTA
CTGCCTCAGAAGATGGTACGGTTCGAAAGTGGGATGCGGAAACATGGGAA
GAAATCGATCGCATCGAAGCCCACAAGAAACTTATCACCGATTGTCAATT
CTCTTCAGACTACACCATGTTCATTAGTTCTTCGAAGGACCACACTGCCA
AGTTATGGAGCTTCCATGACTTTGAGTTATTGAAGACATTCTCTGTAGAC
CATCCCGTGAACTCTGCATCTTTGTCTCCAATTTTTTCTCACATATTGCT
TGGTGGTGGTCAAGAAGCTAGCATGGTGACAACAACAACTGATCGACAAG
GAAAGTTTGAAGCGAAAATCTTTCACCTCGTGTACGAAGAGGAGCTTGGA
AGAGTCAAGGGGCATTTCGGCCCTATCAATACTGTCTCATTTTCGCCTGA
CGGACGGATGTACGTGTCAGGAGGAGAGGATGGATTTGTACGGTTACATG
AATTTGACGAGGAGTATTTTGTCAAAGGAAGAGAAGAAACAGTTTGA

Coding sequence (CDS) from alignment at tig00004441_pilon:133959..134855+

>Gchil7100.t1 ID=Gchil7100.t1|Name=Gchil7100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00004441_pilon:133959..134855+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGTCGCCTACATGTTGGCGTTCCAGTAATGGTGAGAGGATTGG
AACATATAAAGGTCACAACGGTGCTGTACGAGATATCGCTATTACCTACA
ATACAGATAGAGTTATAACGGCTTCGGCCGATAACTCCGCAATTCTATGG
CGCGCCGACAATGGCGAGAAGTTGTATCAGTGGCATTTCAAATCTCCATC
TCGTGCCGTAACATTCAGCCCTGGAGATAATTACATTGCACTTGCCACAG
CGAAGCTTATGGGACAACCATCGCTTGTTTACATTTTCGAGCACGATAGG
GATTCGAGTGAGCAAAATGAAGAGCCTGTTGCTATATTGGAAGGGCACAG
TGGAACGATCGTAACGGTTGATTGGTATCCAACGGGCGAATACCTGCTTA
CTGCCTCAGAAGATGGTACGGTTCGAAAGTGGGATGCGGAAACATGGGAA
GAAATCGATCGCATCGAAGCCCACAAGAAACTTATCACCGATTGTCAATT
CTCTTCAGACTACACCATGTTCATTAGTTCTTCGAAGGACCACACTGCCA
AGTTATGGAGCTTCCATGACTTTGAGTTATTGAAGACATTCTCTGTAGAC
CATCCCGTGAACTCTGCATCTTTGTCTCCAATTTTTTCTCACATATTGCT
TGGTGGTGGTCAAGAAGCTAGCATGGTGACAACAACAACTGATCGACAAG
GAAAGTTTGAAGCGAAAATCTTTCACCTCGTGTACGAAGAGGAGCTTGGA
AGAGTCAAGGGGCATTTCGGCCCTATCAATACTGTCTCATTTTCGCCTGA
CGGACGGATGTACGTGTCAGGAGGAGAGGATGGATTTGTACGGTTACATG
AATTTGACGAGGAGTATTTTGTCAAAGGAAGAGAAGAAACAGTTTGA