Gchil2022.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2022.t1
Unique Name	Gchil2022.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1761895..1763199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	4.48e-131
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2022	Gchil2022	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1761895..1763199 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2022.t1.start1	Gchil2022.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1761895..1761897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2022.t1.CDS1	Gchil2022.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1761895..1763199 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2022.t1.exon1	Gchil2022.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1761895..1763199 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2022.t1.stop1	Gchil2022.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1763197..1763199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2022.t1	Gchil2022.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1761895..1763199 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1761895..1763199+
coding sequence from alignment at tig00004439_pilon:1761895..1763199+

mRNA sequence

>Gchil2022.t1 ID=Gchil2022.t1|Name=Gchil2022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MESPASVSQVEVRRATPVNMCGWLFKEGKRFRSRYKRFLVLQQGVLSNHH
NEMSAPTWVVRLADCPFVAGPRNRELLLHFPQRRISFFADNDDVYEKWLH
AIKCSTNCTVNDFYSVGELLGEGAFAQVKLATHKQTKDKVAIKVIKKKGY
DPKEMEFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGIKYLHMHEIVHRDIKPENVLCKAKCWP
LQVKIADFGLANFSKDGEIKEQENNMIGTPGYVAPEVIKREKYGTAVDMW
AIGVLLYIMLSGKMPFYGRDDHACLRMTASGKYSMPPKEWSRVSDNAISL
VKGLLQLNPEKRLTANAALEHRWLADPSAASASPINNDLSGIHSSRRKFR
KAVMATMTIQRINNLTSLSAAAAAAASTTKTTSA*

spliced messenger RNA

>Gchil2022.t1 ID=Gchil2022.t1|Name=Gchil2022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004439_pilon:1761895..1763199+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTCCTGCTTCCGTGTCGCAGGTCGAGGTGCGACGTGCTACCCC
CGTCAACATGTGCGGCTGGCTATTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAACGCTTTCTCGTATTGCAACAAGGCGTGCTTTCCAACCATCAC
AACGAAATGTCCGCGCCTACGTGGGTCGTGCGTCTGGCTGACTGCCCTTT
TGTCGCCGGTCCGCGAAACAGAGAGCTTCTCCTACATTTCCCGCAACGTC
GTATCTCCTTCTTCGCCGACAATGATGATGTATATGAAAAGTGGTTGCAT
GCCATCAAGTGCTCCACCAACTGCACTGTCAATGACTTTTACTCCGTTGG
CGAACTGTTGGGAGAGGGTGCCTTCGCGCAGGTCAAGCTTGCCACGCACA
AGCAGACTAAAGATAAGGTTGCTATCAAGGTCATAAAGAAGAAGGGCTAC
GACCCCAAGGAAATGGAATTCATTATGCGCGAGGTCGATATTATGAAGAG
TGTTTCTCATCCCAATGTCGTCAATACCATCGATATATTCGACTCTCCCT
CGCAGCTACACATTGTGCTCGAGTATATGCAGGGCGGTGAGCTCTTCGAT
ATTATTGCCGAGGCCGGCTCTTTCTCAGAACAACAGGCGGCACAAGTCAC
TCGTGATGTCATCAAGGGCATCAAATATCTGCATATGCATGAAATTGTCC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGTAAGGCAAAGTGCTGGCCT
CTGCAAGTTAAGATAGCCGACTTTGGCCTTGCAAACTTCTCGAAGGACGG
CGAAATTAAGGAACAAGAGAATAACATGATCGGCACCCCAGGATATGTTG
CGCCTGAAGTCATCAAGCGTGAAAAATATGGCACCGCCGTCGATATGTGG
GCCATTGGCGTACTACTCTACATCATGCTTAGTGGGAAGATGCCCTTCTA
CGGAAGAGATGATCATGCTTGCCTGAGGATGACTGCGAGCGGCAAATACA
GCATGCCTCCCAAGGAGTGGTCCAGGGTTAGTGATAATGCCATTTCGCTG
GTCAAGGGCTTGTTACAACTTAATCCCGAGAAACGGCTTACCGCCAACGC
TGCATTAGAACACAGGTGGCTTGCTGATCCTTCTGCTGCCAGCGCTTCGC
CAATCAACAACGATCTCAGTGGTATTCACTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCTACTATGACTATTCAAAGGATCAACAATCTTACAAG
TCTATctgctgctgctgctgccgccgcCTCTACGACCAAAACAACTTCCG
CCTAG

protein sequence of Gchil2022.t1

>Gchil2022.t1 ID=Gchil2022.t1|Name=Gchil2022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MESPASVSQVEVRRATPVNMCGWLFKEGKRFRSRYKRFLVLQQGVLSNHH
NEMSAPTWVVRLADCPFVAGPRNRELLLHFPQRRISFFADNDDVYEKWLH
AIKCSTNCTVNDFYSVGELLGEGAFAQVKLATHKQTKDKVAIKVIKKKGY
DPKEMEFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGIKYLHMHEIVHRDIKPENVLCKAKCWP
LQVKIADFGLANFSKDGEIKEQENNMIGTPGYVAPEVIKREKYGTAVDMW
AIGVLLYIMLSGKMPFYGRDDHACLRMTASGKYSMPPKEWSRVSDNAISL
VKGLLQLNPEKRLTANAALEHRWLADPSAASASPINNDLSGIHSSRRKFR
KAVMATMTIQRINNLTSLSAAAAAAASTTKTTSA*

mRNA from alignment at tig00004439_pilon:1761895..1763199+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2022.t1 ID=Gchil2022.t1|Name=Gchil2022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004439_pilon:1761895..1763199+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAGTCCTGCTTCCGTGTCGCAGGTCGAGGTGCGACGTGCTACCCC
CGTCAACATGTGCGGCTGGCTATTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAACGCTTTCTCGTATTGCAACAAGGCGTGCTTTCCAACCATCAC
AACGAAATGTCCGCGCCTACGTGGGTCGTGCGTCTGGCTGACTGCCCTTT
TGTCGCCGGTCCGCGAAACAGAGAGCTTCTCCTACATTTCCCGCAACGTC
GTATCTCCTTCTTCGCCGACAATGATGATGTATATGAAAAGTGGTTGCAT
GCCATCAAGTGCTCCACCAACTGCACTGTCAATGACTTTTACTCCGTTGG
CGAACTGTTGGGAGAGGGTGCCTTCGCGCAGGTCAAGCTTGCCACGCACA
AGCAGACTAAAGATAAGGTTGCTATCAAGGTCATAAAGAAGAAGGGCTAC
GACCCCAAGGAAATGGAATTCATTATGCGCGAGGTCGATATTATGAAGAG
TGTTTCTCATCCCAATGTCGTCAATACCATCGATATATTCGACTCTCCCT
CGCAGCTACACATTGTGCTCGAGTATATGCAGGGCGGTGAGCTCTTCGAT
ATTATTGCCGAGGCCGGCTCTTTCTCAGAACAACAGGCGGCACAAGTCAC
TCGTGATGTCATCAAGGGCATCAAATATCTGCATATGCATGAAATTGTCC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGTAAGGCAAAGTGCTGGCCT
CTGCAAGTTAAGATAGCCGACTTTGGCCTTGCAAACTTCTCGAAGGACGG
CGAAATTAAGGAACAAGAGAATAACATGATCGGCACCCCAGGATATGTTG
CGCCTGAAGTCATCAAGCGTGAAAAATATGGCACCGCCGTCGATATGTGG
GCCATTGGCGTACTACTCTACATCATGCTTAGTGGGAAGATGCCCTTCTA
CGGAAGAGATGATCATGCTTGCCTGAGGATGACTGCGAGCGGCAAATACA
GCATGCCTCCCAAGGAGTGGTCCAGGGTTAGTGATAATGCCATTTCGCTG
GTCAAGGGCTTGTTACAACTTAATCCCGAGAAACGGCTTACCGCCAACGC
TGCATTAGAACACAGGTGGCTTGCTGATCCTTCTGCTGCCAGCGCTTCGC
CAATCAACAACGATCTCAGTGGTATTCACTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCTACTATGACTATTCAAAGGATCAACAATCTTACAAG
TCTATctgctgctgctgctgccgccgcCTCTACGACCAAAACAACTTCCG
CCTAG

Coding sequence (CDS) from alignment at tig00004439_pilon:1761895..1763199+

>Gchil2022.t1 ID=Gchil2022.t1|Name=Gchil2022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004439_pilon:1761895..1763199+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAGTCCTGCTTCCGTGTCGCAGGTCGAGGTGCGACGTGCTACCCC
CGTCAACATGTGCGGCTGGCTATTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAACGCTTTCTCGTATTGCAACAAGGCGTGCTTTCCAACCATCAC
AACGAAATGTCCGCGCCTACGTGGGTCGTGCGTCTGGCTGACTGCCCTTT
TGTCGCCGGTCCGCGAAACAGAGAGCTTCTCCTACATTTCCCGCAACGTC
GTATCTCCTTCTTCGCCGACAATGATGATGTATATGAAAAGTGGTTGCAT
GCCATCAAGTGCTCCACCAACTGCACTGTCAATGACTTTTACTCCGTTGG
CGAACTGTTGGGAGAGGGTGCCTTCGCGCAGGTCAAGCTTGCCACGCACA
AGCAGACTAAAGATAAGGTTGCTATCAAGGTCATAAAGAAGAAGGGCTAC
GACCCCAAGGAAATGGAATTCATTATGCGCGAGGTCGATATTATGAAGAG
TGTTTCTCATCCCAATGTCGTCAATACCATCGATATATTCGACTCTCCCT
CGCAGCTACACATTGTGCTCGAGTATATGCAGGGCGGTGAGCTCTTCGAT
ATTATTGCCGAGGCCGGCTCTTTCTCAGAACAACAGGCGGCACAAGTCAC
TCGTGATGTCATCAAGGGCATCAAATATCTGCATATGCATGAAATTGTCC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGTAAGGCAAAGTGCTGGCCT
CTGCAAGTTAAGATAGCCGACTTTGGCCTTGCAAACTTCTCGAAGGACGG
CGAAATTAAGGAACAAGAGAATAACATGATCGGCACCCCAGGATATGTTG
CGCCTGAAGTCATCAAGCGTGAAAAATATGGCACCGCCGTCGATATGTGG
GCCATTGGCGTACTACTCTACATCATGCTTAGTGGGAAGATGCCCTTCTA
CGGAAGAGATGATCATGCTTGCCTGAGGATGACTGCGAGCGGCAAATACA
GCATGCCTCCCAAGGAGTGGTCCAGGGTTAGTGATAATGCCATTTCGCTG
GTCAAGGGCTTGTTACAACTTAATCCCGAGAAACGGCTTACCGCCAACGC
TGCATTAGAACACAGGTGGCTTGCTGATCCTTCTGCTGCCAGCGCTTCGC
CAATCAACAACGATCTCAGTGGTATTCACTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCTACTATGACTATTCAAAGGATCAACAATCTTACAAG
TCTATctgctgctgctgctgccgccgcCTCTACGACCAAAACAACTTCCG
CCTAG