Gchil2023.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2023.t1
Unique NameGchil2023.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1763481..1764958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc01g008840.2.1
PFAMsPCI
Max annot lvl35493|Streptophyta
KEGG koko:K12176
GOsGO:0000338,GO:0003674,GO:0003712,GO:0003714,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue2.51e-189
EggNOG OGsCOG5159@1|root,KOG1464@2759|Eukaryota,37MZ5@33090|Viridiplantae,3G7Y7@35493|Streptophyta,44S1I@71274|asterids
Descriptionmotif in proteasome subunits, Int-6, Nip-1 and TRIP-15
COG categoryOT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2023Gchil2023Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1763481..1764958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1Gchil2023.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1763481..1764958 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1.stop1Gchil2023.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1763481..1763483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1.CDS1Gchil2023.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1763481..1764713 -
Gchil2023.t1.CDS2Gchil2023.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1764872..1764958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1.exon1Gchil2023.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1763481..1764713 -
Gchil2023.t1.exon2Gchil2023.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1764872..1764958 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1.intron1Gchil2023.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1764714..1764871 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2023.t1.start1Gchil2023.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1764956..1764958 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2023.t1 ID=Gchil2023.t1|Name=Gchil2023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=440bp
MSDMEDDEDYGFEYETDDEEEQDIDIENQYYTAKGSLETDTKAALEAFEA
VLQMETEKGEWGFKALKQIVKLKFGLGDFKGMIVRYKEMLTYIRSAVTRN
YSENTINAILDFVSSSNQMDLLQEFYETTLAALQEARNERLWFKTNLKLG
KLWFDVGDFPRLMRILKELHKSCQRTDGTDDHKKGTQLLEVYALEIQMYT
ATKNTKRLKHLYEKALQVKSAIPHPRIMGVIRECGGKMHMGASNFEKAHS
DFFESFKNYDEAGNARRIQCLKYLVLANMLALSDIDPFDSPEAKPYKNNK
EIQSMTDLRGAYTNKDVNEFERILKENSSTIMDDPFIRVHIQDLLTRFRS
QVLLKLIQPYTRIAIPYAAKELNIEVQELEDLLVALIMDNKVNGKIDQVN
NVLILHDKDSKGDEAKYDAIRSWSEHIEVLQSSISSLLL*
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spliced messenger RNA

>Gchil2023.t1 ID=Gchil2023.t1|Name=Gchil2023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00004439_pilon:1763481..1764958- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATATGGAAGATGATGAAGATTACGGATTTGAGTATGAGACAGA
TGATGAAGAAGAGCAAGATATTGACATTGAGAACCAGTACTACACAGCTA
AAGGGTCACTCGAAACCGATACAAAAGCTGCACTCGAAGCTTTTGAAGCA
GTGCTTCAAATGGAAACAGAGAAAGGAGAATGGGGATTCAAAGCATTGAA
ACAAATTGTGAAACTGAAGTTTGGTCTCGGGGATTTCAAGGGCATGATTG
TGCGATACAAAGAAATGCTTACGTACATTCGTTCCGCAGTTACTCGAAAT
TATTCAGAAAATACCATCAACGCTATCCTTGACTTTGTTTCCTCCTCTAA
TCAAATGGATCTTCTTCAGGAATTCTACGAAACTACGTTAGCTGCATTAC
AGGAAGCCCGAAATGAGCGATTATGGTTTAAGACTAATCTCAAACTTGGC
AAACTATGGTTCGACGTCGGCGATTTTCCGAGACTCATGCGCATTCTGAA
AGAGCTTCACAAATCGTGTCAAAGAACGGACGGAACTGACGATCATAAGA
AAGGAACACAATTGCTTGAAGTTTATGCGCTTGAAATCCAAATGTACACT
GCAACAAAAAACACAAAGCGTTTGAAACATCTCTATGAGAAAGCCCTCCA
AGTGAAGAGCGCAATCCCACACCCACGAATCATGGGTGTTATCCGCGAAT
GTGGTGGAAAAATGCACATGGGGGCCAGCAACTTTGAAAAGGCACACTCA
GACTTCTTTGAATCTTTCAAGAATTACGATGAAGCCGGAAATGCGAGGCG
GATTCAATGTCTGAAATATCTTGTCCTCGCGAACATGCTTGCACTGAGCG
ATATCGATCCTTTTGATTCGCCAGAAGCAAAGCCCTACAAGAACAACAAA
GAAATTCAGTCCATGACCGATCTACGAGGAGCCTATACAAATAAAGATGT
CAATGAATTCGAGCGAATCTTGAAGGAAAACTCGTCTACTATTATGGATG
ATCCATTTATCCGTGTTCACATACAGGATTTGCTGACGCGCTTTCGATCG
CAGGTGCTTCTCAAGTTGATTCAGCCATATACGAGAATCGCGATACCTTA
TGCTGCAAAAGAGTTAAACATTGAGGTACAAGAATTGGAGGACTTACTCG
TGGCTTTGATTATGGACAACAAAGTGAACGGGAAAATTGATCAGGTGAAC
AATGTGCTCATCCTTCATGACAAGGATTCCAAGGGGGATGAAGCGAAATA
CGATGCTATTCGTAGCTGGAGTGAACACATAGAGGTCCTTCAGTCCTCGA
TATCCAGCCTTTTGCTATGA
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protein sequence of Gchil2023.t1

>Gchil2023.t1 ID=Gchil2023.t1|Name=Gchil2023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=440bp
MSDMEDDEDYGFEYETDDEEEQDIDIENQYYTAKGSLETDTKAALEAFEA
VLQMETEKGEWGFKALKQIVKLKFGLGDFKGMIVRYKEMLTYIRSAVTRN
YSENTINAILDFVSSSNQMDLLQEFYETTLAALQEARNERLWFKTNLKLG
KLWFDVGDFPRLMRILKELHKSCQRTDGTDDHKKGTQLLEVYALEIQMYT
ATKNTKRLKHLYEKALQVKSAIPHPRIMGVIRECGGKMHMGASNFEKAHS
DFFESFKNYDEAGNARRIQCLKYLVLANMLALSDIDPFDSPEAKPYKNNK
EIQSMTDLRGAYTNKDVNEFERILKENSSTIMDDPFIRVHIQDLLTRFRS
QVLLKLIQPYTRIAIPYAAKELNIEVQELEDLLVALIMDNKVNGKIDQVN
NVLILHDKDSKGDEAKYDAIRSWSEHIEVLQSSISSLLL*
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mRNA from alignment at tig00004439_pilon:1763481..1764958-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2023.t1 ID=Gchil2023.t1|Name=Gchil2023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1478bp|location=Sequence derived from alignment at tig00004439_pilon:1763481..1764958- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGATATGGAAGATGATGAAGATTACGGATTTGAGTATGAGACAGA
TGATGAAGAAGAGCAAGATATTGACATTGAGAACCAGGTATGTGTGAAGT
GGGGCACTCCGTTTGGAAAATGAGGTAGACCATCTCATTTAGTTTTGCCA
AGTTATTTTTTCTCCAAAGCAAACCTACCCGAAGTCTAACTATATCGTAA
CTCATGCGGTCCTGCCTATTTCTGGAAATGCGTTTTCATATATAGTACTA
CACAGCTAAAGGGTCACTCGAAACCGATACAAAAGCTGCACTCGAAGCTT
TTGAAGCAGTGCTTCAAATGGAAACAGAGAAAGGAGAATGGGGATTCAAA
GCATTGAAACAAATTGTGAAACTGAAGTTTGGTCTCGGGGATTTCAAGGG
CATGATTGTGCGATACAAAGAAATGCTTACGTACATTCGTTCCGCAGTTA
CTCGAAATTATTCAGAAAATACCATCAACGCTATCCTTGACTTTGTTTCC
TCCTCTAATCAAATGGATCTTCTTCAGGAATTCTACGAAACTACGTTAGC
TGCATTACAGGAAGCCCGAAATGAGCGATTATGGTTTAAGACTAATCTCA
AACTTGGCAAACTATGGTTCGACGTCGGCGATTTTCCGAGACTCATGCGC
ATTCTGAAAGAGCTTCACAAATCGTGTCAAAGAACGGACGGAACTGACGA
TCATAAGAAAGGAACACAATTGCTTGAAGTTTATGCGCTTGAAATCCAAA
TGTACACTGCAACAAAAAACACAAAGCGTTTGAAACATCTCTATGAGAAA
GCCCTCCAAGTGAAGAGCGCAATCCCACACCCACGAATCATGGGTGTTAT
CCGCGAATGTGGTGGAAAAATGCACATGGGGGCCAGCAACTTTGAAAAGG
CACACTCAGACTTCTTTGAATCTTTCAAGAATTACGATGAAGCCGGAAAT
GCGAGGCGGATTCAATGTCTGAAATATCTTGTCCTCGCGAACATGCTTGC
ACTGAGCGATATCGATCCTTTTGATTCGCCAGAAGCAAAGCCCTACAAGA
ACAACAAAGAAATTCAGTCCATGACCGATCTACGAGGAGCCTATACAAAT
AAAGATGTCAATGAATTCGAGCGAATCTTGAAGGAAAACTCGTCTACTAT
TATGGATGATCCATTTATCCGTGTTCACATACAGGATTTGCTGACGCGCT
TTCGATCGCAGGTGCTTCTCAAGTTGATTCAGCCATATACGAGAATCGCG
ATACCTTATGCTGCAAAAGAGTTAAACATTGAGGTACAAGAATTGGAGGA
CTTACTCGTGGCTTTGATTATGGACAACAAAGTGAACGGGAAAATTGATC
AGGTGAACAATGTGCTCATCCTTCATGACAAGGATTCCAAGGGGGATGAA
GCGAAATACGATGCTATTCGTAGCTGGAGTGAACACATAGAGGTCCTTCA
GTCCTCGATATCCAGCCTTTTGCTATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1763481..1764958-

>Gchil2023.t1 ID=Gchil2023.t1|Name=Gchil2023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00004439_pilon:1763481..1764958- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGATATGGAAGATGATGAAGATTACGGATTTGAGTATGAGACAGA
TGATGAAGAAGAGCAAGATATTGACATTGAGAACCAGTACTACACAGCTA
AAGGGTCACTCGAAACCGATACAAAAGCTGCACTCGAAGCTTTTGAAGCA
GTGCTTCAAATGGAAACAGAGAAAGGAGAATGGGGATTCAAAGCATTGAA
ACAAATTGTGAAACTGAAGTTTGGTCTCGGGGATTTCAAGGGCATGATTG
TGCGATACAAAGAAATGCTTACGTACATTCGTTCCGCAGTTACTCGAAAT
TATTCAGAAAATACCATCAACGCTATCCTTGACTTTGTTTCCTCCTCTAA
TCAAATGGATCTTCTTCAGGAATTCTACGAAACTACGTTAGCTGCATTAC
AGGAAGCCCGAAATGAGCGATTATGGTTTAAGACTAATCTCAAACTTGGC
AAACTATGGTTCGACGTCGGCGATTTTCCGAGACTCATGCGCATTCTGAA
AGAGCTTCACAAATCGTGTCAAAGAACGGACGGAACTGACGATCATAAGA
AAGGAACACAATTGCTTGAAGTTTATGCGCTTGAAATCCAAATGTACACT
GCAACAAAAAACACAAAGCGTTTGAAACATCTCTATGAGAAAGCCCTCCA
AGTGAAGAGCGCAATCCCACACCCACGAATCATGGGTGTTATCCGCGAAT
GTGGTGGAAAAATGCACATGGGGGCCAGCAACTTTGAAAAGGCACACTCA
GACTTCTTTGAATCTTTCAAGAATTACGATGAAGCCGGAAATGCGAGGCG
GATTCAATGTCTGAAATATCTTGTCCTCGCGAACATGCTTGCACTGAGCG
ATATCGATCCTTTTGATTCGCCAGAAGCAAAGCCCTACAAGAACAACAAA
GAAATTCAGTCCATGACCGATCTACGAGGAGCCTATACAAATAAAGATGT
CAATGAATTCGAGCGAATCTTGAAGGAAAACTCGTCTACTATTATGGATG
ATCCATTTATCCGTGTTCACATACAGGATTTGCTGACGCGCTTTCGATCG
CAGGTGCTTCTCAAGTTGATTCAGCCATATACGAGAATCGCGATACCTTA
TGCTGCAAAAGAGTTAAACATTGAGGTACAAGAATTGGAGGACTTACTCG
TGGCTTTGATTATGGACAACAAAGTGAACGGGAAAATTGATCAGGTGAAC
AATGTGCTCATCCTTCATGACAAGGATTCCAAGGGGGATGAAGCGAAATA
CGATGCTATTCGTAGCTGGAGTGAACACATAGAGGTCCTTCAGTCCTCGA
TATCCAGCCTTTTGCTATGA
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