Gchil853.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil853.t1
Unique NameGchil853.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:524806..525978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog99598.Cal7507_5244
Preferred namechlG
PFAMsUbiA
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00020
KEGG koko:K04040
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue7.85e-156
EggNOG OGsCOG0382@1|root,COG0382@2|Bacteria,1G2BD@1117|Cyanobacteria,1HJH8@1161|Nostocales
EC2.5.1.133,2.5.1.62
DescriptionTIGRFAM bacteriochlorophyll chlorophyll synthetase
COG categoryH
BiGG ReactioniJN678.chlG
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil853Gchil853Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 524806..525978 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil853.t1.stop1Gchil853.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 524806..524808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil853.t1.CDS1Gchil853.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 524806..525978 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil853.t1.exon1Gchil853.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 524806..525978 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil853.t1.start1Gchil853.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 525976..525978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil853.t1Gchil853.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 524806..525978 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil853.t1 ID=Gchil853.t1|Name=Gchil853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MTASASSASLTFACPLLLASSSRASSLLAAPPSVHQRYRATRFTRVRAPV
CATEAPNPSKPPPTESPSDASESSSPGAVRQLLGIRGADTTTSKWRIRLQ
LMKPVTWIPLLWGVTCGAAASGNYTWTPEHVAQALACMFLAGPLLTGYTQ
TLNDWCDREIDAINEPQRPIPSGAISEREVKIQLSALLVAGIALSAAIDV
WTAHDWPVNTALTLFGSFIAYIYSEPPLKLKQNGWLGCYALGASYISLPW
WCGHAAFGHLDWKVMVLTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPV
MFGVDKAKWICAGMIDIFQLLVAAVIYAIGEHKYAAAILALVIPQIAFQF
QYLLKDPIKNDVKYQAAAQPFLVIGILVTALAVGHHGPLL*
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spliced messenger RNA

>Gchil853.t1 ID=Gchil853.t1|Name=Gchil853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000017_pilon:524806..525978- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGTCTGCGAGCTCAGCTTCGCTTACCTTTGCGTGCCCGCTGCT
GCTTGCTTCCTCGTCGCGTGCCTCTTCGCTGCTTGCCGCCCCGCCTTCTG
TTCACCAGCGCTACCGCGCCACGCGTTTCACGCGTGTCCGCGCCCCTGTT
TGCGCCACCGAGGCCCCGAATCCTTCCAAGCCCCCGCCCACTGAGTCTCC
CTCCGATGCGTCCGAGTCATCTTCCCCGGGTGCCGTTCGTCAACTGCTGG
GAATCCGTGGCGCCGATACCACCACCTCCAAGTGGCGCATTCGCTTGCAA
TTGATGAAACCCGTCACTTGGATCCCACTCTTGTGGGGAGTTACATGCGG
TGCGGCCGCCTCGGGAAACTACACCTGGACCCCGGAGCATGTGGCTCAGG
CTTTGGCCTGTATGTTTTTGGCAGGGCCATTGCTTACGGGTTACACTCAG
ACTTTGAACGACTGGTGCGATCGTGAAATCGATGCTATCAATGAGCCGCA
ACGTCCAATTCCCTCAGGCGCCATTTCAGAACGGGAGGTCAAGATACAGT
TGAGTGCTCTTCTTGTCGCGGGCATTGCACTCAGTGCCGCAATCGACGTG
TGGACAGCACATGACTGGCCGGTGAATACCGCACTCACTTTGTTTGGATC
CTTTATTGCCTACATATATTCGGAGCCTCCTTTGAAGCTCAAGCAGAATG
GATGGCTTGGTTGTTATGCGTTGGGAGCCAGTTACATTAGCTTGCCTTGG
TGGTGCGGCCATGCCGCCTTCGGTCACTTGGATTGGAAGGTCATGGTGCT
CACTCTGTTCTACTCGTTTGCTGGTCTTGGTATTGCAATAGTGAATGACT
TCAAGAGTGTCGAGGGAGATCGCGCCACTGGCATGCAGAGCCTCCCGGTA
ATGTTCGGTGTTGACAAGGCCAAATGGATTTGTGCTGGTATGATTGATAT
ATTCCAGTTATTAGTGGCGGCAGTTATTTATGCCATCGGCGAACACAAGT
ACGCTGCTGCCATTCTTGCATTGGTTATTCCGCAAATAGCGTTCCAGTTC
CAATATCTATTGAAGGACCCCATTAAGAATGATGTCAAATATCAGGCCGC
CGCTCAGCCATTTTTGGTCATCGGCATTCTCGTGACTGCTCTCGCCGTCG
GACACCACGGACCGCTTCTGTGA
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protein sequence of Gchil853.t1

>Gchil853.t1 ID=Gchil853.t1|Name=Gchil853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MTASASSASLTFACPLLLASSSRASSLLAAPPSVHQRYRATRFTRVRAPV
CATEAPNPSKPPPTESPSDASESSSPGAVRQLLGIRGADTTTSKWRIRLQ
LMKPVTWIPLLWGVTCGAAASGNYTWTPEHVAQALACMFLAGPLLTGYTQ
TLNDWCDREIDAINEPQRPIPSGAISEREVKIQLSALLVAGIALSAAIDV
WTAHDWPVNTALTLFGSFIAYIYSEPPLKLKQNGWLGCYALGASYISLPW
WCGHAAFGHLDWKVMVLTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPV
MFGVDKAKWICAGMIDIFQLLVAAVIYAIGEHKYAAAILALVIPQIAFQF
QYLLKDPIKNDVKYQAAAQPFLVIGILVTALAVGHHGPLL*
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mRNA from alignment at tig00000017_pilon:524806..525978-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil853.t1 ID=Gchil853.t1|Name=Gchil853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000017_pilon:524806..525978- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTCTGCGAGCTCAGCTTCGCTTACCTTTGCGTGCCCGCTGCT
GCTTGCTTCCTCGTCGCGTGCCTCTTCGCTGCTTGCCGCCCCGCCTTCTG
TTCACCAGCGCTACCGCGCCACGCGTTTCACGCGTGTCCGCGCCCCTGTT
TGCGCCACCGAGGCCCCGAATCCTTCCAAGCCCCCGCCCACTGAGTCTCC
CTCCGATGCGTCCGAGTCATCTTCCCCGGGTGCCGTTCGTCAACTGCTGG
GAATCCGTGGCGCCGATACCACCACCTCCAAGTGGCGCATTCGCTTGCAA
TTGATGAAACCCGTCACTTGGATCCCACTCTTGTGGGGAGTTACATGCGG
TGCGGCCGCCTCGGGAAACTACACCTGGACCCCGGAGCATGTGGCTCAGG
CTTTGGCCTGTATGTTTTTGGCAGGGCCATTGCTTACGGGTTACACTCAG
ACTTTGAACGACTGGTGCGATCGTGAAATCGATGCTATCAATGAGCCGCA
ACGTCCAATTCCCTCAGGCGCCATTTCAGAACGGGAGGTCAAGATACAGT
TGAGTGCTCTTCTTGTCGCGGGCATTGCACTCAGTGCCGCAATCGACGTG
TGGACAGCACATGACTGGCCGGTGAATACCGCACTCACTTTGTTTGGATC
CTTTATTGCCTACATATATTCGGAGCCTCCTTTGAAGCTCAAGCAGAATG
GATGGCTTGGTTGTTATGCGTTGGGAGCCAGTTACATTAGCTTGCCTTGG
TGGTGCGGCCATGCCGCCTTCGGTCACTTGGATTGGAAGGTCATGGTGCT
CACTCTGTTCTACTCGTTTGCTGGTCTTGGTATTGCAATAGTGAATGACT
TCAAGAGTGTCGAGGGAGATCGCGCCACTGGCATGCAGAGCCTCCCGGTA
ATGTTCGGTGTTGACAAGGCCAAATGGATTTGTGCTGGTATGATTGATAT
ATTCCAGTTATTAGTGGCGGCAGTTATTTATGCCATCGGCGAACACAAGT
ACGCTGCTGCCATTCTTGCATTGGTTATTCCGCAAATAGCGTTCCAGTTC
CAATATCTATTGAAGGACCCCATTAAGAATGATGTCAAATATCAGGCCGC
CGCTCAGCCATTTTTGGTCATCGGCATTCTCGTGACTGCTCTCGCCGTCG
GACACCACGGACCGCTTCTGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:524806..525978-

>Gchil853.t1 ID=Gchil853.t1|Name=Gchil853.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000017_pilon:524806..525978- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTCTGCGAGCTCAGCTTCGCTTACCTTTGCGTGCCCGCTGCT
GCTTGCTTCCTCGTCGCGTGCCTCTTCGCTGCTTGCCGCCCCGCCTTCTG
TTCACCAGCGCTACCGCGCCACGCGTTTCACGCGTGTCCGCGCCCCTGTT
TGCGCCACCGAGGCCCCGAATCCTTCCAAGCCCCCGCCCACTGAGTCTCC
CTCCGATGCGTCCGAGTCATCTTCCCCGGGTGCCGTTCGTCAACTGCTGG
GAATCCGTGGCGCCGATACCACCACCTCCAAGTGGCGCATTCGCTTGCAA
TTGATGAAACCCGTCACTTGGATCCCACTCTTGTGGGGAGTTACATGCGG
TGCGGCCGCCTCGGGAAACTACACCTGGACCCCGGAGCATGTGGCTCAGG
CTTTGGCCTGTATGTTTTTGGCAGGGCCATTGCTTACGGGTTACACTCAG
ACTTTGAACGACTGGTGCGATCGTGAAATCGATGCTATCAATGAGCCGCA
ACGTCCAATTCCCTCAGGCGCCATTTCAGAACGGGAGGTCAAGATACAGT
TGAGTGCTCTTCTTGTCGCGGGCATTGCACTCAGTGCCGCAATCGACGTG
TGGACAGCACATGACTGGCCGGTGAATACCGCACTCACTTTGTTTGGATC
CTTTATTGCCTACATATATTCGGAGCCTCCTTTGAAGCTCAAGCAGAATG
GATGGCTTGGTTGTTATGCGTTGGGAGCCAGTTACATTAGCTTGCCTTGG
TGGTGCGGCCATGCCGCCTTCGGTCACTTGGATTGGAAGGTCATGGTGCT
CACTCTGTTCTACTCGTTTGCTGGTCTTGGTATTGCAATAGTGAATGACT
TCAAGAGTGTCGAGGGAGATCGCGCCACTGGCATGCAGAGCCTCCCGGTA
ATGTTCGGTGTTGACAAGGCCAAATGGATTTGTGCTGGTATGATTGATAT
ATTCCAGTTATTAGTGGCGGCAGTTATTTATGCCATCGGCGAACACAAGT
ACGCTGCTGCCATTCTTGCATTGGTTATTCCGCAAATAGCGTTCCAGTTC
CAATATCTATTGAAGGACCCCATTAAGAATGATGTCAAATATCAGGCCGC
CGCTCAGCCATTTTTGGTCATCGGCATTCTCGTGACTGCTCTCGCCGTCG
GACACCACGGACCGCTTCTGTGA
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