Gchil866.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil866.t1
Unique NameGchil866.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:702646..703431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AET03933
PFAMsCRAL_TRIO,CRAL_TRIO_N
Max annot lvl35493|Streptophyta
Evalue4.05e-41
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota,37M33@33090|Viridiplantae,3G7C9@35493|Streptophyta,4JGFY@91835|fabids
DescriptionCRAL-TRIO domain-containing protein C23B6.04c-like
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil866Gchil866Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 702646..703431 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil866.t1.start1Gchil866.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 702646..702648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil866.t1.CDS1Gchil866.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 702646..703431 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil866.t1.exon1Gchil866.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 702646..703431 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil866.t1.stop1Gchil866.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 703429..703431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil866.t1Gchil866.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 702646..703431 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil866.t1 ID=Gchil866.t1|Name=Gchil866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MLARLRKVYLSAPGPQLPSDPLEALKLLIEPQARNEATSKFLTDTTLKRY
LVARNDDPSKAFKQISDTLSWRLSYHPQSLYLTHKQSLHHEAQSGKMYIL
PTPDCHGRAIILMRPGLENSTNGAANIRHLVYTLERASTLSEQRGDGKFI
VIVDYFTGKISASTCPSLSTMKETTHILQTHYPERLGGMLFYEAPSFFLG
LFKMIRPFIDPVTRDKLRFVKRGESVEAPFLDWDAIPLKYGGRLHYQFDV
EKYFECEQESQ*
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spliced messenger RNA

>Gchil866.t1 ID=Gchil866.t1|Name=Gchil866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000017_pilon:702646..703431+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCAGGTTACGAAAGGTCTACTTGTCTGCACCGGGCCCGCAACT
GCCTTCTGACCCACTAGAAGCACTCAAGCTTCTAATCGAACCCCAAGCTC
GAAACGAAGCCACCTCCAAGTTTCTTACCGACACCACCTTGAAGCGGTAC
CTCGTCGCCCGAAATGACGATCCATCCAAGGCCTTCAAACAGATTTCCGA
CACTCTTTCGTGGAGACTATCATACCATCCGCAAAGCCTGTACCTAACGC
ATAAACAATCTTTGCACCATGAAGCGCAATCCGGAAAGATGTACATTTTG
CCAACCCCCGATTGTCACGGTAGAGCCATCATTCTTATGAGACCCGGACT
TGAAAATTCTACGAATGGAGCAGCAAATATTCGACATCTTGTATATACTC
TGGAACGAGCTTCGACTCTATCTGAACAACGTGGTGATGGCAAATTCATC
GTCATAGTTGATTACTTCACAGGAAAAATTTCCGCGTCAACCTGTCCTTC
TTTGTCGACCATGAAGGAAACCACTCACATTTTGCAGACACATTATCCTG
AGCGGTTGGGCGGAATGTTGTTTTACGAGGCTCCTTCATTCTTTCTTGGT
TTGTTCAAGATGATTCGGCCCTTTATTGACCCGGTGACGAGGGATAAGTT
GCGCTTCGTGAAGAGAGGAGAAAGTGTTGAAGCGCCGTTTTTGGATTGGG
ATGCAATCCCTCTCAAGTACGGTGGACGCTTACATTATCAGTTTGATGTC
GAAAAGTATTTTGAATGTGAACAAGAATCGCAGTAA
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protein sequence of Gchil866.t1

>Gchil866.t1 ID=Gchil866.t1|Name=Gchil866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MLARLRKVYLSAPGPQLPSDPLEALKLLIEPQARNEATSKFLTDTTLKRY
LVARNDDPSKAFKQISDTLSWRLSYHPQSLYLTHKQSLHHEAQSGKMYIL
PTPDCHGRAIILMRPGLENSTNGAANIRHLVYTLERASTLSEQRGDGKFI
VIVDYFTGKISASTCPSLSTMKETTHILQTHYPERLGGMLFYEAPSFFLG
LFKMIRPFIDPVTRDKLRFVKRGESVEAPFLDWDAIPLKYGGRLHYQFDV
EKYFECEQESQ*
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mRNA from alignment at tig00000017_pilon:702646..703431+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil866.t1 ID=Gchil866.t1|Name=Gchil866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000017_pilon:702646..703431+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCAGGTTACGAAAGGTCTACTTGTCTGCACCGGGCCCGCAACT
GCCTTCTGACCCACTAGAAGCACTCAAGCTTCTAATCGAACCCCAAGCTC
GAAACGAAGCCACCTCCAAGTTTCTTACCGACACCACCTTGAAGCGGTAC
CTCGTCGCCCGAAATGACGATCCATCCAAGGCCTTCAAACAGATTTCCGA
CACTCTTTCGTGGAGACTATCATACCATCCGCAAAGCCTGTACCTAACGC
ATAAACAATCTTTGCACCATGAAGCGCAATCCGGAAAGATGTACATTTTG
CCAACCCCCGATTGTCACGGTAGAGCCATCATTCTTATGAGACCCGGACT
TGAAAATTCTACGAATGGAGCAGCAAATATTCGACATCTTGTATATACTC
TGGAACGAGCTTCGACTCTATCTGAACAACGTGGTGATGGCAAATTCATC
GTCATAGTTGATTACTTCACAGGAAAAATTTCCGCGTCAACCTGTCCTTC
TTTGTCGACCATGAAGGAAACCACTCACATTTTGCAGACACATTATCCTG
AGCGGTTGGGCGGAATGTTGTTTTACGAGGCTCCTTCATTCTTTCTTGGT
TTGTTCAAGATGATTCGGCCCTTTATTGACCCGGTGACGAGGGATAAGTT
GCGCTTCGTGAAGAGAGGAGAAAGTGTTGAAGCGCCGTTTTTGGATTGGG
ATGCAATCCCTCTCAAGTACGGTGGACGCTTACATTATCAGTTTGATGTC
GAAAAGTATTTTGAATGTGAACAAGAATCGCAGTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:702646..703431+

>Gchil866.t1 ID=Gchil866.t1|Name=Gchil866.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000017_pilon:702646..703431+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCAGGTTACGAAAGGTCTACTTGTCTGCACCGGGCCCGCAACT
GCCTTCTGACCCACTAGAAGCACTCAAGCTTCTAATCGAACCCCAAGCTC
GAAACGAAGCCACCTCCAAGTTTCTTACCGACACCACCTTGAAGCGGTAC
CTCGTCGCCCGAAATGACGATCCATCCAAGGCCTTCAAACAGATTTCCGA
CACTCTTTCGTGGAGACTATCATACCATCCGCAAAGCCTGTACCTAACGC
ATAAACAATCTTTGCACCATGAAGCGCAATCCGGAAAGATGTACATTTTG
CCAACCCCCGATTGTCACGGTAGAGCCATCATTCTTATGAGACCCGGACT
TGAAAATTCTACGAATGGAGCAGCAAATATTCGACATCTTGTATATACTC
TGGAACGAGCTTCGACTCTATCTGAACAACGTGGTGATGGCAAATTCATC
GTCATAGTTGATTACTTCACAGGAAAAATTTCCGCGTCAACCTGTCCTTC
TTTGTCGACCATGAAGGAAACCACTCACATTTTGCAGACACATTATCCTG
AGCGGTTGGGCGGAATGTTGTTTTACGAGGCTCCTTCATTCTTTCTTGGT
TTGTTCAAGATGATTCGGCCCTTTATTGACCCGGTGACGAGGGATAAGTT
GCGCTTCGTGAAGAGAGGAGAAAGTGTTGAAGCGCCGTTTTTGGATTGGG
ATGCAATCCCTCTCAAGTACGGTGGACGCTTACATTATCAGTTTGATGTC
GAAAAGTATTTTGAATGTGAACAAGAATCGCAGTAA
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