Gchil829.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil829.t1
Unique NameGchil829.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:150176..151384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF057CT
PFAMsHAD_2
Max annot lvl2759|Eukaryota
Evalue3.8e-47
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Descriptionpseudouridine 5'-phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil829Gchil829Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 150176..151384 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil829.t1.start1Gchil829.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 150176..150178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil829.t1.CDS1Gchil829.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 150176..151384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil829.t1.exon1Gchil829.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 150176..151384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil829.t1.stop1Gchil829.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 151382..151384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil829.t1Gchil829.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 150176..151384 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil829.t1 ID=Gchil829.t1|Name=Gchil829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=403bp
MAPSTLRATFVAQPPLQCARQSYLTPRLTPRRARRPRVAPLAWRFRAVFL
PPDGEQDADAADPADPDAEERRLGDLPDSLSASTSPPPPPPPPPPPPPRP
PPRGSLSNIDRLLEDTEPRYTTWQQDRASTSLSTFSYDRPFLGADELNES
LKPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARELEMRAWAVVAEENTLP
PPDLQDIVRAEDMAPEAAVQRVFYWFAEWRDIKRYVFRKAEVYQHLCASY
KFHAREGVLDWLRNLHQYGVKSILYSPHPRRFVMDVLQRIGLASFFTSAD
IVAADDECESLEQVFLLAAVKAQRPPSKCIVFTDRPSAVTAAHDVSAKVV
ALLGVHAAYEVKSADQTVADYQQLVLYNIRRLFSQQGAEFLDPRTELEID
RK*
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spliced messenger RNA

>Gchil829.t1 ID=Gchil829.t1|Name=Gchil829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000017_pilon:150176..151384+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCTCCACACTGCGCGCCACGTTCGTCGCACAACCTCCGTTGCA
ATGCGCCCGACAAAGTTACCTCACACCCCGTCTCACGCCACGGCGAGCGC
GCCGCCCTCGCGTCGCGCCGCTGGCGTGGCGCTTTCGCGCCGTGTTTCTG
CCCCccgacggggagcaggacgctgacgctgccgaccccgccgaccccga
cgctgaGGAGCGCCGCCTTGGTGATTTGCCTGATTCTCTGTCCGCGTCTA
CCTCTccgccgccgccgccgccgccgccgccgccgccgccgccccgcccg
ccgccgcGCGGCTCGCTTTCTAACATCGACCGCTTGCTGGAGGACACCGA
GCCGCGCTACACCACCTGGCAGCAGGACCGCGCCTCCACTTCGCTCTCCA
CCTTCAGCTACGACCGCCCGTTTCTCGGCGCTGATGAGCTTAATGAGTCG
CTCAAGCCCTCGCATCTGCAGCGCCACCGCCATGTGCTTGCCCCTGACGA
ACAGTTTGCCGCCGTTTTCATGTGGGACACCGTCGTGTATAATGCACGCG
AGCTCGAGATGCGCGCCTGGGCCGTAGTGGCCGAGGAGAACACTCTCCCG
CCTCCCGACTTACAAGACATTGTGCGCGCCGAGGACATGGCCCCCGAGGC
CGCCGTGCAGCGCGTCTTCTACTGGTTTGCAGAGTGGCGCGACATCAAGC
GCTACGTTTTTCGGAAGGCTGAGGTGTACCAGCATCTCTGCGCTTCATAT
AAGTTCCACGCCCGAGAGGGCGTGCTTGACTGGCTGCGCAATCTTCACCA
GTACGGTGTCAAGAGCATTTTGTACTCCCCGCATCCGAGACGCTTTGTCA
TGGACGTGCTTCAGCGAATCGGCCTCGCCTCGTTTTTCACTTCTGCCGAC
ATTGTGGCCGCCGACGATGAGTGCGAATCCTTGGAACAAGTTTTCTTACT
GGCCGCTGTCAAGGCGCAGCGACCGCCTAGCAAGTGCATCGTTTTCACCG
ATAGACCGTCCGCCGTCACTGCCGCGCACGACGTCAGCGCAAAAGTTGTC
GCCCTCCTGGGTGTGCATGCCGCTTACGAGGTCAAGTCTGCTGATCAAAC
CGTTGCCGATTATCAACAACTCGTTTTGTACAACATTCGCCGTCTGTTTT
CACAGCAGGGAGCTGAGTTTCTTGATCCGCGCACCGAGCTTGAGATTGAT
CGCAAGTAA
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protein sequence of Gchil829.t1

>Gchil829.t1 ID=Gchil829.t1|Name=Gchil829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=403bp
MAPSTLRATFVAQPPLQCARQSYLTPRLTPRRARRPRVAPLAWRFRAVFL
PPDGEQDADAADPADPDAEERRLGDLPDSLSASTSPPPPPPPPPPPPPRP
PPRGSLSNIDRLLEDTEPRYTTWQQDRASTSLSTFSYDRPFLGADELNES
LKPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARELEMRAWAVVAEENTLP
PPDLQDIVRAEDMAPEAAVQRVFYWFAEWRDIKRYVFRKAEVYQHLCASY
KFHAREGVLDWLRNLHQYGVKSILYSPHPRRFVMDVLQRIGLASFFTSAD
IVAADDECESLEQVFLLAAVKAQRPPSKCIVFTDRPSAVTAAHDVSAKVV
ALLGVHAAYEVKSADQTVADYQQLVLYNIRRLFSQQGAEFLDPRTELEID
RK*
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mRNA from alignment at tig00000017_pilon:150176..151384+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil829.t1 ID=Gchil829.t1|Name=Gchil829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000017_pilon:150176..151384+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCTCCACACTGCGCGCCACGTTCGTCGCACAACCTCCGTTGCA
ATGCGCCCGACAAAGTTACCTCACACCCCGTCTCACGCCACGGCGAGCGC
GCCGCCCTCGCGTCGCGCCGCTGGCGTGGCGCTTTCGCGCCGTGTTTCTG
CCCCccgacggggagcaggacgctgacgctgccgaccccgccgaccccga
cgctgaGGAGCGCCGCCTTGGTGATTTGCCTGATTCTCTGTCCGCGTCTA
CCTCTccgccgccgccgccgccgccgccgccgccgccgccgccccgcccg
ccgccgcGCGGCTCGCTTTCTAACATCGACCGCTTGCTGGAGGACACCGA
GCCGCGCTACACCACCTGGCAGCAGGACCGCGCCTCCACTTCGCTCTCCA
CCTTCAGCTACGACCGCCCGTTTCTCGGCGCTGATGAGCTTAATGAGTCG
CTCAAGCCCTCGCATCTGCAGCGCCACCGCCATGTGCTTGCCCCTGACGA
ACAGTTTGCCGCCGTTTTCATGTGGGACACCGTCGTGTATAATGCACGCG
AGCTCGAGATGCGCGCCTGGGCCGTAGTGGCCGAGGAGAACACTCTCCCG
CCTCCCGACTTACAAGACATTGTGCGCGCCGAGGACATGGCCCCCGAGGC
CGCCGTGCAGCGCGTCTTCTACTGGTTTGCAGAGTGGCGCGACATCAAGC
GCTACGTTTTTCGGAAGGCTGAGGTGTACCAGCATCTCTGCGCTTCATAT
AAGTTCCACGCCCGAGAGGGCGTGCTTGACTGGCTGCGCAATCTTCACCA
GTACGGTGTCAAGAGCATTTTGTACTCCCCGCATCCGAGACGCTTTGTCA
TGGACGTGCTTCAGCGAATCGGCCTCGCCTCGTTTTTCACTTCTGCCGAC
ATTGTGGCCGCCGACGATGAGTGCGAATCCTTGGAACAAGTTTTCTTACT
GGCCGCTGTCAAGGCGCAGCGACCGCCTAGCAAGTGCATCGTTTTCACCG
ATAGACCGTCCGCCGTCACTGCCGCGCACGACGTCAGCGCAAAAGTTGTC
GCCCTCCTGGGTGTGCATGCCGCTTACGAGGTCAAGTCTGCTGATCAAAC
CGTTGCCGATTATCAACAACTCGTTTTGTACAACATTCGCCGTCTGTTTT
CACAGCAGGGAGCTGAGTTTCTTGATCCGCGCACCGAGCTTGAGATTGAT
CGCAAGTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:150176..151384+

>Gchil829.t1 ID=Gchil829.t1|Name=Gchil829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000017_pilon:150176..151384+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCTCCACACTGCGCGCCACGTTCGTCGCACAACCTCCGTTGCA
ATGCGCCCGACAAAGTTACCTCACACCCCGTCTCACGCCACGGCGAGCGC
GCCGCCCTCGCGTCGCGCCGCTGGCGTGGCGCTTTCGCGCCGTGTTTCTG
CCCCccgacggggagcaggacgctgacgctgccgaccccgccgaccccga
cgctgaGGAGCGCCGCCTTGGTGATTTGCCTGATTCTCTGTCCGCGTCTA
CCTCTccgccgccgccgccgccgccgccgccgccgccgccgccccgcccg
ccgccgcGCGGCTCGCTTTCTAACATCGACCGCTTGCTGGAGGACACCGA
GCCGCGCTACACCACCTGGCAGCAGGACCGCGCCTCCACTTCGCTCTCCA
CCTTCAGCTACGACCGCCCGTTTCTCGGCGCTGATGAGCTTAATGAGTCG
CTCAAGCCCTCGCATCTGCAGCGCCACCGCCATGTGCTTGCCCCTGACGA
ACAGTTTGCCGCCGTTTTCATGTGGGACACCGTCGTGTATAATGCACGCG
AGCTCGAGATGCGCGCCTGGGCCGTAGTGGCCGAGGAGAACACTCTCCCG
CCTCCCGACTTACAAGACATTGTGCGCGCCGAGGACATGGCCCCCGAGGC
CGCCGTGCAGCGCGTCTTCTACTGGTTTGCAGAGTGGCGCGACATCAAGC
GCTACGTTTTTCGGAAGGCTGAGGTGTACCAGCATCTCTGCGCTTCATAT
AAGTTCCACGCCCGAGAGGGCGTGCTTGACTGGCTGCGCAATCTTCACCA
GTACGGTGTCAAGAGCATTTTGTACTCCCCGCATCCGAGACGCTTTGTCA
TGGACGTGCTTCAGCGAATCGGCCTCGCCTCGTTTTTCACTTCTGCCGAC
ATTGTGGCCGCCGACGATGAGTGCGAATCCTTGGAACAAGTTTTCTTACT
GGCCGCTGTCAAGGCGCAGCGACCGCCTAGCAAGTGCATCGTTTTCACCG
ATAGACCGTCCGCCGTCACTGCCGCGCACGACGTCAGCGCAAAAGTTGTC
GCCCTCCTGGGTGTGCATGCCGCTTACGAGGTCAAGTCTGCTGATCAAAC
CGTTGCCGATTATCAACAACTCGTTTTGTACAACATTCGCCGTCTGTTTT
CACAGCAGGGAGCTGAGTTTCTTGATCCGCGCACCGAGCTTGAGATTGAT
CGCAAGTAA
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