Gchil1995.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1995.t1
Unique NameGchil1995.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1586969..1587565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1995Gchil1995Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1586969..1587565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1Gchil1995.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1586969..1587565 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1.stop1Gchil1995.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1586969..1586971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1.CDS1Gchil1995.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1586969..1587081 -
Gchil1995.t1.CDS2Gchil1995.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1587181..1587565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1.exon1Gchil1995.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1586969..1587081 -
Gchil1995.t1.exon2Gchil1995.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1587181..1587565 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1.intron1Gchil1995.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1587082..1587180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1995.t1.start1Gchil1995.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1587563..1587565 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1995.t1 ID=Gchil1995.t1|Name=Gchil1995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MDKSETSSEQPSVPVALKHNVMLTIKEYNTELREQVWCLFENGMKQNSEE
AAENLTRSRIATLLDFSRPQFQNMDEFLCANNGGKLFVALDNHERVVGMI
GVKRTDKDILTNSAELTRISVAREWRRKAMETYAKLGFKETGSENVFPMD
SSPRLVQFVRYMSKT*
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spliced messenger RNA

>Gchil1995.t1 ID=Gchil1995.t1|Name=Gchil1995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004439_pilon:1586969..1587565- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGAGCGAAACGTCATCAGAACAACCATCGGTTCCAGTTGCATT
AAAACACAATGTGATGTTGACTATAAAGGAATATAATACTGAGCTGCGAG
AACAAGTATGGTGTTTATTCGAAAATGGTATGAAACAAAACAGCGAAGAA
GCCGCGGAAAATCTTACCCGCAGCCGAATAGCAACCCTACTTGACTTTTC
AAGGCCGCAGTTTCAAAACATGGATGAGTTTCTTTGCGCCAACAATGGAG
GAAAACTGTTCGTTGCCTTAGATAATCACGAAAGAGTTGTTGGAATGATT
GGTGTAAAGAGGACGGACAAGGACATTCTCACAAACTCCGCTGAGCTGAC
AAGAATATCTGTGGCGAGAGAGTGGCGAAGGAAAGCGATGGAAACATATG
CGAAGTTAGGGTTCAAAGAGACTGGGAGTGAGAATGTGTTTCCAATGGAC
AGTTCTCCCCGGCTTGTGCAATTTGTGAGATACATGTCTAAAACATAG
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protein sequence of Gchil1995.t1

>Gchil1995.t1 ID=Gchil1995.t1|Name=Gchil1995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MDKSETSSEQPSVPVALKHNVMLTIKEYNTELREQVWCLFENGMKQNSEE
AAENLTRSRIATLLDFSRPQFQNMDEFLCANNGGKLFVALDNHERVVGMI
GVKRTDKDILTNSAELTRISVAREWRRKAMETYAKLGFKETGSENVFPMD
SSPRLVQFVRYMSKT*
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mRNA from alignment at tig00004439_pilon:1586969..1587565-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1995.t1 ID=Gchil1995.t1|Name=Gchil1995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00004439_pilon:1586969..1587565- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGAGCGAAACGTCATCAGAACAACCATCGGTTCCAGTTGCATT
AAAACACAATGTGATGTTGACTATAAAGGAATATAATACTGAGCTGCGAG
AACAAGTATGGTGTTTATTCGAAAATGGTATGAAACAAAACAGCGAAGAA
GCCGCGGAAAATCTTACCCGCAGCCGAATAGCAACCCTACTTGACTTTTC
AAGGCCGCAGTTTCAAAACATGGATGAGTTTCTTTGCGCCAACAATGGAG
GAAAACTGTTCGTTGCCTTAGATAATCACGAAAGAGTTGTTGGAATGATT
GGTGTAAAGAGGACGGACAAGGACATTCTCACAAACTCCGCTGAGCTGAC
AAGAATATCTGTGGCGAGAGAGTGGCGAAGGAAAGGTTTGTGTCGTGCAT
TAGTTGATCATGCTGCCAATTACGCTTCGAAAACCCTTTGTGCTGAACTA
CTGTATCTCATTACATTGAATTCGGTTGCGACAGCGATGGAAACATATGC
GAAGTTAGGGTTCAAAGAGACTGGGAGTGAGAATGTGTTTCCAATGGACA
GTTCTCCCCGGCTTGTGCAATTTGTGAGATACATGTCTAAAACATAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1586969..1587565-

>Gchil1995.t1 ID=Gchil1995.t1|Name=Gchil1995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004439_pilon:1586969..1587565- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGAGCGAAACGTCATCAGAACAACCATCGGTTCCAGTTGCATT
AAAACACAATGTGATGTTGACTATAAAGGAATATAATACTGAGCTGCGAG
AACAAGTATGGTGTTTATTCGAAAATGGTATGAAACAAAACAGCGAAGAA
GCCGCGGAAAATCTTACCCGCAGCCGAATAGCAACCCTACTTGACTTTTC
AAGGCCGCAGTTTCAAAACATGGATGAGTTTCTTTGCGCCAACAATGGAG
GAAAACTGTTCGTTGCCTTAGATAATCACGAAAGAGTTGTTGGAATGATT
GGTGTAAAGAGGACGGACAAGGACATTCTCACAAACTCCGCTGAGCTGAC
AAGAATATCTGTGGCGAGAGAGTGGCGAAGGAAAGCGATGGAAACATATG
CGAAGTTAGGGTTCAAAGAGACTGGGAGTGAGAATGTGTTTCCAATGGAC
AGTTCTCCCCGGCTTGTGCAATTTGTGAGATACATGTCTAAAACATAG
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