Gchil1985.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1985.t1
Unique NameGchil1985.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1565327..1565663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA12G02870.1
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue9.78e-12
EggNOG OGs2BVTD@1|root,2S46B@2759|Eukaryota,37WA7@33090|Viridiplantae,3GK1U@35493|Streptophyta
DescriptionNADH dehydrogenase ubiquinone 1 beta subcomplex subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1985Gchil1985Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1565327..1565663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1Gchil1985.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1565327..1565663 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1.stop1Gchil1985.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1565327..1565329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1.CDS1Gchil1985.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1565327..1565398 -
Gchil1985.t1.CDS2Gchil1985.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1565499..1565663 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1.exon1Gchil1985.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1565327..1565398 -
Gchil1985.t1.exon2Gchil1985.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1565499..1565663 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1.intron1Gchil1985.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1565399..1565498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1985.t1.start1Gchil1985.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1565661..1565663 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1985.t1 ID=Gchil1985.t1|Name=Gchil1985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=79bp
MGGGASQKYPVPGEPYGGFKPTPPARWHSRLGYAFGVTMWLWVFYRAKQD
LPHMLGFEKPWEHHHGDSHEHHDNESTH*
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spliced messenger RNA

>Gchil1985.t1 ID=Gchil1985.t1|Name=Gchil1985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00004439_pilon:1565327..1565663- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGAGGTGCGTCTCAGAAATATCCCGTGCCGGGCGAGCCGTACGG
CGGCTTCAAGCCCACCCCGCCGGCCAGATGGCATTCGCGTCTTGGATATG
CGTTTGGCGTTACCATGTGGCTATGGGTTTTTTATCGTGCCAAGCAAGAC
CTTCCTCACATGCTTGGCTTTGAAAAGCCTTGGGAACACCACCACGGAGA
CTCACACGAGCATCATGACAATGAAAGCACTCACTAG
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protein sequence of Gchil1985.t1

>Gchil1985.t1 ID=Gchil1985.t1|Name=Gchil1985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=79bp
MGGGASQKYPVPGEPYGGFKPTPPARWHSRLGYAFGVTMWLWVFYRAKQD
LPHMLGFEKPWEHHHGDSHEHHDNESTH*
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mRNA from alignment at tig00004439_pilon:1565327..1565663-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1985.t1 ID=Gchil1985.t1|Name=Gchil1985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp|location=Sequence derived from alignment at tig00004439_pilon:1565327..1565663- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGGAGGTGCGTCTCAGAAATATCCCGTGCCGGGCGAGCCGTACGG
CGGCTTCAAGCCCACCCCGCCGGCCAGATGGCATTCGCGTCTTGGATATG
CGTTTGGCGTTACCATGTGGCTATGGGTTTTTTATCGTGCCAAGCAAGAC
CTTCCTCACATGCTTGTATGTGTTTTGTTTTATGCAATTTCTTGCGCTTG
AACGCTTGTGCTGCTTTGTTACTGACGTTGCTCTGTCTACTGATGCGTCG
GCGAAACAAAAATAGGGCTTTGAAAAGCCTTGGGAACACCACCACGGAGA
CTCACACGAGCATCATGACAATGAAAGCACTCACTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1565327..1565663-

>Gchil1985.t1 ID=Gchil1985.t1|Name=Gchil1985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00004439_pilon:1565327..1565663- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGGAGGTGCGTCTCAGAAATATCCCGTGCCGGGCGAGCCGTACGG
CGGCTTCAAGCCCACCCCGCCGGCCAGATGGCATTCGCGTCTTGGATATG
CGTTTGGCGTTACCATGTGGCTATGGGTTTTTTATCGTGCCAAGCAAGAC
CTTCCTCACATGCTTGGCTTTGAAAAGCCTTGGGAACACCACCACGGAGA
CTCACACGAGCATCATGACAATGAAAGCACTCACTAG
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