Gchil1981.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1981.t1
Unique Name	Gchil1981.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1558382..1559776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004997996.1
PFAMs	DUF72
Max annot lvl	33154\|Opisthokonta
Evalue	3.03e-38
EggNOG OGs	COG1801@1\|root,2S9RJ@2759\|Eukaryota,3ASFI@33154\|Opisthokonta
Description	Protein of unknown function DUF72
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1981	Gchil1981	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1558382..1559776 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1981.t1.start1	Gchil1981.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1558382..1558384 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1981.t1.CDS1	Gchil1981.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1558382..1559776 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1981.t1.exon1	Gchil1981.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1558382..1559776 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1981.t1.stop1	Gchil1981.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1559774..1559776 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1981.t1	Gchil1981.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1558382..1559776 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1558382..1559776+
coding sequence from alignment at tig00004439_pilon:1558382..1559776+

mRNA sequence

>Gchil1981.t1 ID=Gchil1981.t1|Name=Gchil1981.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp
MIRSPPPPPRSALKSIRIGTAGYVYTHWRRGAFYPPGLALSRELSYYFDN
FLTVEINTTWHAFPAPHTLRRWRSLAPKNARFALKVPRLITHQRRLHCVR
HLVLSFCALAREHLQSNLGPFLFQCPPSLPFSMHLLRQFVADIQYVRAQC
FPTPLQIALEFRDTHWFCTPVFHLLAEHDIALVDNILVHDHDFSLLNHTL
FPNSRLLTNVPSASWRYLRFHGSKNPAVLTDFPPAVLSRFAKRVAAHPTV
TEYAFFLNDWGAFAPKNAMQYARLVAAETNCSVTSLFGRFLPLWCRKPPS
LQSFFTPKPPRKTHTSASEAHAPHHHASPTQPPHQITNHPQPSAPDCQPS
PSSSKPFATVSDMQIPELPSDSDNSVLAIEPPRCSPPPANLAHIDETTPS
SARKRPVNEGFNPSPKKRKPSLAEHGVKHSKSPTPKKKRKTRNTTTTSGV
ADIASFFAPDSEKG*

spliced messenger RNA

>Gchil1981.t1 ID=Gchil1981.t1|Name=Gchil1981.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004439_pilon:1558382..1559776+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACGCAGCCCCCCTCCCCCACCGCGCTCCGCGCTAAAGTCGATACG
CATTGGAACGGCGGGCTACGTCTACACACATTGGCGTCGCGGCGCCTTCT
ATCCGCCTGGTCTTGCGCTGTCTCGCGAGCTTTCTTACTACTTTGACAAT
TTTCTCACCGTCGAGATAAACACAACATGGCATGCCTTTCCGGCGCCGCA
CACCCTGCGTCGATGGCGCTCGCTCGCTCCGAAAAATGCACGCTTCGCAC
TCAAGGTGCCGCGCCTCATCACGCACCAGAGGCGTCTTCATTGCGTTCGA
CACCTCGTACTGTCCTTCTGTGCCTTGGCTCGTGAGCATCTGCAATCCAA
CCTCGGCCCCTTTTTGTTTCAGTGCCCTCCGTCCCTTCCATTCTCCATGC
ACCTGCTTCGCCAATTTGTTGCCGACATTCAGTACGTCAGGGCCCAGTGT
TTCCCGACCCCGCTCCAGATTGCCCTCGAATTTCGTGACACCCACTGGTT
CTGCACCCCCGTCTTTCACTTGTTGGCTGAGCATGACATTGCCCTGGTCG
ACAACATCCTCGTCCACGACCACGACTTCTCCCTGCTGAACCACACACTC
TTTCCAAATTCCCGTTTGCTCACCAATGTACCCTCTGCCTCATGGAGATA
CCTTCGCTTTCACGGCTCCAAAAACCCCGCTGTACTCACTGATTTCCCGC
CTGCTGTTCTCTCTCGCTTTGCGAAACGCGTTGCCGCACATCCAACCGTC
ACCGAGTATGCCTTCTTCCTCAACGATTGGGGCGCTTTTGCCCCGAAAAA
CGCAATGCAGTACGCCCGTCTCGTCGCCGCCGAGACAAATTGCTCCGTCA
CGAGCTTGTTTGGCCGATTTTTGCCTCTCTGGTGCAGGAAACCTCCCTCT
CTCCAGTCTTTCTTCACCCCAAAGCCTCCCAGAAAAACACACACGTCTGC
GAGCGAGGCGCACGCTCCACACCACCACGCCAGCCCAACCCAACCACCCC
ATCAAATCACAAACCACCCGCAGCCGAGCGCCCCGGACTGCCAACCCTCC
CCTAGCAGTAGCAAACCATTTGCAACTGTCTCCGACATGCAAATCCCAGA
ACTGCCGTCTGACAGTGATAACAGCGTACTTGCCATCGAGCCCCCACGTT
GCTCTCCACCGCCCGCCAACCTCGCCCACATCGACGAGACGACTCCGTCA
AGCGCGCGAAAGAGGCCCGTAAATGAAGGTTTCAATCCATCACCTAAGAA
AAGGAAACCCAGTTTAGCAGAGCACGGCGTGAAACACTCAAAGTCGCCGA
CTCCTAAGAAGAAGCGCAAAACGCGCAACACTACAACAACTAGTGGCGTA
GCCGATATCGCCAGTTTTTTTGCCCCTGACTCTGAAAAGGGCTGA

protein sequence of Gchil1981.t1

>Gchil1981.t1 ID=Gchil1981.t1|Name=Gchil1981.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=465bp
MIRSPPPPPRSALKSIRIGTAGYVYTHWRRGAFYPPGLALSRELSYYFDN
FLTVEINTTWHAFPAPHTLRRWRSLAPKNARFALKVPRLITHQRRLHCVR
HLVLSFCALAREHLQSNLGPFLFQCPPSLPFSMHLLRQFVADIQYVRAQC
FPTPLQIALEFRDTHWFCTPVFHLLAEHDIALVDNILVHDHDFSLLNHTL
FPNSRLLTNVPSASWRYLRFHGSKNPAVLTDFPPAVLSRFAKRVAAHPTV
TEYAFFLNDWGAFAPKNAMQYARLVAAETNCSVTSLFGRFLPLWCRKPPS
LQSFFTPKPPRKTHTSASEAHAPHHHASPTQPPHQITNHPQPSAPDCQPS
PSSSKPFATVSDMQIPELPSDSDNSVLAIEPPRCSPPPANLAHIDETTPS
SARKRPVNEGFNPSPKKRKPSLAEHGVKHSKSPTPKKKRKTRNTTTTSGV
ADIASFFAPDSEKG*

mRNA from alignment at tig00004439_pilon:1558382..1559776+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1981.t1 ID=Gchil1981.t1|Name=Gchil1981.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004439_pilon:1558382..1559776+ (Gracilaria chilensis NLEC103_M9 male)
ATGATACGCAGCCCCCCTCCCCCACCGCGCTCCGCGCTAAAGTCGATACG
CATTGGAACGGCGGGCTACGTCTACACACATTGGCGTCGCGGCGCCTTCT
ATCCGCCTGGTCTTGCGCTGTCTCGCGAGCTTTCTTACTACTTTGACAAT
TTTCTCACCGTCGAGATAAACACAACATGGCATGCCTTTCCGGCGCCGCA
CACCCTGCGTCGATGGCGCTCGCTCGCTCCGAAAAATGCACGCTTCGCAC
TCAAGGTGCCGCGCCTCATCACGCACCAGAGGCGTCTTCATTGCGTTCGA
CACCTCGTACTGTCCTTCTGTGCCTTGGCTCGTGAGCATCTGCAATCCAA
CCTCGGCCCCTTTTTGTTTCAGTGCCCTCCGTCCCTTCCATTCTCCATGC
ACCTGCTTCGCCAATTTGTTGCCGACATTCAGTACGTCAGGGCCCAGTGT
TTCCCGACCCCGCTCCAGATTGCCCTCGAATTTCGTGACACCCACTGGTT
CTGCACCCCCGTCTTTCACTTGTTGGCTGAGCATGACATTGCCCTGGTCG
ACAACATCCTCGTCCACGACCACGACTTCTCCCTGCTGAACCACACACTC
TTTCCAAATTCCCGTTTGCTCACCAATGTACCCTCTGCCTCATGGAGATA
CCTTCGCTTTCACGGCTCCAAAAACCCCGCTGTACTCACTGATTTCCCGC
CTGCTGTTCTCTCTCGCTTTGCGAAACGCGTTGCCGCACATCCAACCGTC
ACCGAGTATGCCTTCTTCCTCAACGATTGGGGCGCTTTTGCCCCGAAAAA
CGCAATGCAGTACGCCCGTCTCGTCGCCGCCGAGACAAATTGCTCCGTCA
CGAGCTTGTTTGGCCGATTTTTGCCTCTCTGGTGCAGGAAACCTCCCTCT
CTCCAGTCTTTCTTCACCCCAAAGCCTCCCAGAAAAACACACACGTCTGC
GAGCGAGGCGCACGCTCCACACCACCACGCCAGCCCAACCCAACCACCCC
ATCAAATCACAAACCACCCGCAGCCGAGCGCCCCGGACTGCCAACCCTCC
CCTAGCAGTAGCAAACCATTTGCAACTGTCTCCGACATGCAAATCCCAGA
ACTGCCGTCTGACAGTGATAACAGCGTACTTGCCATCGAGCCCCCACGTT
GCTCTCCACCGCCCGCCAACCTCGCCCACATCGACGAGACGACTCCGTCA
AGCGCGCGAAAGAGGCCCGTAAATGAAGGTTTCAATCCATCACCTAAGAA
AAGGAAACCCAGTTTAGCAGAGCACGGCGTGAAACACTCAAAGTCGCCGA
CTCCTAAGAAGAAGCGCAAAACGCGCAACACTACAACAACTAGTGGCGTA
GCCGATATCGCCAGTTTTTTTGCCCCTGACTCTGAAAAGGGCTGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1558382..1559776+

>Gchil1981.t1 ID=Gchil1981.t1|Name=Gchil1981.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00004439_pilon:1558382..1559776+ (Gracilaria chilensis NLEC103_M9 male)
ATGATACGCAGCCCCCCTCCCCCACCGCGCTCCGCGCTAAAGTCGATACG
CATTGGAACGGCGGGCTACGTCTACACACATTGGCGTCGCGGCGCCTTCT
ATCCGCCTGGTCTTGCGCTGTCTCGCGAGCTTTCTTACTACTTTGACAAT
TTTCTCACCGTCGAGATAAACACAACATGGCATGCCTTTCCGGCGCCGCA
CACCCTGCGTCGATGGCGCTCGCTCGCTCCGAAAAATGCACGCTTCGCAC
TCAAGGTGCCGCGCCTCATCACGCACCAGAGGCGTCTTCATTGCGTTCGA
CACCTCGTACTGTCCTTCTGTGCCTTGGCTCGTGAGCATCTGCAATCCAA
CCTCGGCCCCTTTTTGTTTCAGTGCCCTCCGTCCCTTCCATTCTCCATGC
ACCTGCTTCGCCAATTTGTTGCCGACATTCAGTACGTCAGGGCCCAGTGT
TTCCCGACCCCGCTCCAGATTGCCCTCGAATTTCGTGACACCCACTGGTT
CTGCACCCCCGTCTTTCACTTGTTGGCTGAGCATGACATTGCCCTGGTCG
ACAACATCCTCGTCCACGACCACGACTTCTCCCTGCTGAACCACACACTC
TTTCCAAATTCCCGTTTGCTCACCAATGTACCCTCTGCCTCATGGAGATA
CCTTCGCTTTCACGGCTCCAAAAACCCCGCTGTACTCACTGATTTCCCGC
CTGCTGTTCTCTCTCGCTTTGCGAAACGCGTTGCCGCACATCCAACCGTC
ACCGAGTATGCCTTCTTCCTCAACGATTGGGGCGCTTTTGCCCCGAAAAA
CGCAATGCAGTACGCCCGTCTCGTCGCCGCCGAGACAAATTGCTCCGTCA
CGAGCTTGTTTGGCCGATTTTTGCCTCTCTGGTGCAGGAAACCTCCCTCT
CTCCAGTCTTTCTTCACCCCAAAGCCTCCCAGAAAAACACACACGTCTGC
GAGCGAGGCGCACGCTCCACACCACCACGCCAGCCCAACCCAACCACCCC
ATCAAATCACAAACCACCCGCAGCCGAGCGCCCCGGACTGCCAACCCTCC
CCTAGCAGTAGCAAACCATTTGCAACTGTCTCCGACATGCAAATCCCAGA
ACTGCCGTCTGACAGTGATAACAGCGTACTTGCCATCGAGCCCCCACGTT
GCTCTCCACCGCCCGCCAACCTCGCCCACATCGACGAGACGACTCCGTCA
AGCGCGCGAAAGAGGCCCGTAAATGAAGGTTTCAATCCATCACCTAAGAA
AAGGAAACCCAGTTTAGCAGAGCACGGCGTGAAACACTCAAAGTCGCCGA
CTCCTAAGAAGAAGCGCAAAACGCGCAACACTACAACAACTAGTGGCGTA
GCCGATATCGCCAGTTTTTTTGCCCCTGACTCTGAAAAGGGCTGA