Gchil1879.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1879.t1
Unique Name	Gchil1879.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:947653..948849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706746.1
PFAMs	ENTH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12471
KEGG Pathway	ko04144,map04144
GOs	GO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0005905,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008104,GO:0008150,GO:0008289,GO:0009653,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0019220,GO:0019222,GO:0022402,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030154,GO:0030276,GO:0030435,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031323,GO:0031399,GO:0031410,GO:0031982,GO:0032268,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0035091,GO:0035303,GO:0035304,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045334,GO:0048475,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051641,GO:0060255,GO:0061640,GO:0065007,GO:0070727,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0097435,GO:0097708,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:1901981,GO:1902936,GO:1903047,GO:1990778
Evalue	3.05e-42
EggNOG OGs	KOG2056@1\|root,KOG2056@2759\|Eukaryota
Description	lipid binding
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1879	Gchil1879	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 947653..948849 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1879.t1.start1	Gchil1879.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 947653..947655 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1879.t1.CDS1	Gchil1879.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 947653..948849 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1879.t1.exon1	Gchil1879.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 947653..948849 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1879.t1.stop1	Gchil1879.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 948847..948849 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1879.t1	Gchil1879.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 947653..948849 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:947653..948849+
coding sequence from alignment at tig00004439_pilon:947653..948849+

mRNA sequence

>Gchil1879.t1 ID=Gchil1879.t1|Name=Gchil1879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSSRWRCVYKGLEVLKY
VVMHGSSRCLTEARGAITHLEALRAYRKVADGRDVGEGVRNRAALLCDML
SDDELLESERDKSREIRAKIEAGGAGGSVSSEQYRFGTHMNTADSTVIAT
GTATFKGYGDDGAYDEEPAGAFSTLRIEDKKQVDLLGDSDDQTNRPADGL
GGDDDEFDPRGAGNPTQTDAEQEDDLLALALSGPDVAPPPALSSSNGAMK
TSELIQQLAAQKSSALVPVQHTHQPSDTSAFSPPTQTLNTPGVQHATSPG
FAAFNGFGAGVASPEAKGPASIPVRLQRKEEADPFGDLLDTAKKSGVV*

spliced messenger RNA

>Gchil1879.t1 ID=Gchil1879.t1|Name=Gchil1879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004439_pilon:947653..948849+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGATATCGCGTAAAATACGAAACATAGACTGGAAGTCTCTGCA
AAAGTCTGCGCGGAAAGTTCAGGCCTCCACGGCCTCTGCGCTGAAGGACA
TGGTTATGACGGACCTCGAAAACAAAACGCGCTCTGCTACTGCAGACACT
GCATGGGGAGCTTCTGTCACAGACCTGCATCAAATAGCTGGCGGAACGTA
CAACCCCCAGGACTACGCTCTGATCATGTCAATTATTTGGCAGCGTCTCG
GCAGTTCGCGCTGGAGGTGTGTGTATAAGGGTCTCGAGGTCTTGAAATAC
GTTGTCATGCACGGCAGCTCACGCTGCCTAACCGAGGCTCGAGGTGCTAT
AACTCACCTAGAAGCCCTGCGCGCATACCGCAAGGTTGCAGATGGAAGAG
ATGTTGGGGAAGGTGTGCGGAACAGAGCCGCTTTGCTGTGTGACATGCTT
TCAGATGATGAGTTGCTCGAGTCAGAGCGCGACAAGAGCCGCGAAATACG
TGCCAAGATTGAAGCGGGAGGAGCTGGAGGCTCTGTCAGTAGCGAACAAT
ATCGCTTTGGGACTCACATGAACACTGCTGATTCCACGGTTATAGCGACT
GGCACAGCCACATTCAAAGGCTACGGTGACGATGGCGCATACGATGAAGA
GCCTGCTGGAGCGTTCAGTACGCTACGCATTGAAGACAAGAAACAAGTTG
ACCTTCTTGGCGATAGCGACGACCAGACCAACAGACCTGCCGATGGTCTC
GGAGGCGATGACGACGAATTCGATCCGCGTGGCGCAGGGAATCCCACGCA
AACAGACGCGGAGCAAGAAGACGATCTACTTGCACTCGCGCTTTCAGGAC
CGGATGTCGCACCCCCGCCAGCCCTGTCTTCGTCAAATGGCGCCATGAAG
ACCTCGGAACTCATACAACAGCTCGCCGCCCAAAAGTCAAGCGCATTAGT
GCCAGTGCAACACACGCACCAACCGAGTGACACCAGCGCTTTCAGCCCTC
CTACCCAAACTTTGAACACACCAGGCGTACAACACGCGACAAGTCCTGGG
TTTGCTGCGTTTAATGGGTTTGGGGCTGGCGTAGCGTCACCTGAAGCAAA
AGGGCCCGCGTCGATCCCCGTCAGATTGCAAAGAAAGGAAGAGGCAGATC
CATTCGGAGACTTATTGGATACAGCGAAAAAGAGTGGAGTGGTATGA

protein sequence of Gchil1879.t1

>Gchil1879.t1 ID=Gchil1879.t1|Name=Gchil1879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSSRWRCVYKGLEVLKY
VVMHGSSRCLTEARGAITHLEALRAYRKVADGRDVGEGVRNRAALLCDML
SDDELLESERDKSREIRAKIEAGGAGGSVSSEQYRFGTHMNTADSTVIAT
GTATFKGYGDDGAYDEEPAGAFSTLRIEDKKQVDLLGDSDDQTNRPADGL
GGDDDEFDPRGAGNPTQTDAEQEDDLLALALSGPDVAPPPALSSSNGAMK
TSELIQQLAAQKSSALVPVQHTHQPSDTSAFSPPTQTLNTPGVQHATSPG
FAAFNGFGAGVASPEAKGPASIPVRLQRKEEADPFGDLLDTAKKSGVV*

mRNA from alignment at tig00004439_pilon:947653..948849+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1879.t1 ID=Gchil1879.t1|Name=Gchil1879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004439_pilon:947653..948849+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGATATCGCGTAAAATACGAAACATAGACTGGAAGTCTCTGCA
AAAGTCTGCGCGGAAAGTTCAGGCCTCCACGGCCTCTGCGCTGAAGGACA
TGGTTATGACGGACCTCGAAAACAAAACGCGCTCTGCTACTGCAGACACT
GCATGGGGAGCTTCTGTCACAGACCTGCATCAAATAGCTGGCGGAACGTA
CAACCCCCAGGACTACGCTCTGATCATGTCAATTATTTGGCAGCGTCTCG
GCAGTTCGCGCTGGAGGTGTGTGTATAAGGGTCTCGAGGTCTTGAAATAC
GTTGTCATGCACGGCAGCTCACGCTGCCTAACCGAGGCTCGAGGTGCTAT
AACTCACCTAGAAGCCCTGCGCGCATACCGCAAGGTTGCAGATGGAAGAG
ATGTTGGGGAAGGTGTGCGGAACAGAGCCGCTTTGCTGTGTGACATGCTT
TCAGATGATGAGTTGCTCGAGTCAGAGCGCGACAAGAGCCGCGAAATACG
TGCCAAGATTGAAGCGGGAGGAGCTGGAGGCTCTGTCAGTAGCGAACAAT
ATCGCTTTGGGACTCACATGAACACTGCTGATTCCACGGTTATAGCGACT
GGCACAGCCACATTCAAAGGCTACGGTGACGATGGCGCATACGATGAAGA
GCCTGCTGGAGCGTTCAGTACGCTACGCATTGAAGACAAGAAACAAGTTG
ACCTTCTTGGCGATAGCGACGACCAGACCAACAGACCTGCCGATGGTCTC
GGAGGCGATGACGACGAATTCGATCCGCGTGGCGCAGGGAATCCCACGCA
AACAGACGCGGAGCAAGAAGACGATCTACTTGCACTCGCGCTTTCAGGAC
CGGATGTCGCACCCCCGCCAGCCCTGTCTTCGTCAAATGGCGCCATGAAG
ACCTCGGAACTCATACAACAGCTCGCCGCCCAAAAGTCAAGCGCATTAGT
GCCAGTGCAACACACGCACCAACCGAGTGACACCAGCGCTTTCAGCCCTC
CTACCCAAACTTTGAACACACCAGGCGTACAACACGCGACAAGTCCTGGG
TTTGCTGCGTTTAATGGGTTTGGGGCTGGCGTAGCGTCACCTGAAGCAAA
AGGGCCCGCGTCGATCCCCGTCAGATTGCAAAGAAAGGAAGAGGCAGATC
CATTCGGAGACTTATTGGATACAGCGAAAAAGAGTGGAGTGGTATGA

Coding sequence (CDS) from alignment at tig00004439_pilon:947653..948849+

>Gchil1879.t1 ID=Gchil1879.t1|Name=Gchil1879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00004439_pilon:947653..948849+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGATATCGCGTAAAATACGAAACATAGACTGGAAGTCTCTGCA
AAAGTCTGCGCGGAAAGTTCAGGCCTCCACGGCCTCTGCGCTGAAGGACA
TGGTTATGACGGACCTCGAAAACAAAACGCGCTCTGCTACTGCAGACACT
GCATGGGGAGCTTCTGTCACAGACCTGCATCAAATAGCTGGCGGAACGTA
CAACCCCCAGGACTACGCTCTGATCATGTCAATTATTTGGCAGCGTCTCG
GCAGTTCGCGCTGGAGGTGTGTGTATAAGGGTCTCGAGGTCTTGAAATAC
GTTGTCATGCACGGCAGCTCACGCTGCCTAACCGAGGCTCGAGGTGCTAT
AACTCACCTAGAAGCCCTGCGCGCATACCGCAAGGTTGCAGATGGAAGAG
ATGTTGGGGAAGGTGTGCGGAACAGAGCCGCTTTGCTGTGTGACATGCTT
TCAGATGATGAGTTGCTCGAGTCAGAGCGCGACAAGAGCCGCGAAATACG
TGCCAAGATTGAAGCGGGAGGAGCTGGAGGCTCTGTCAGTAGCGAACAAT
ATCGCTTTGGGACTCACATGAACACTGCTGATTCCACGGTTATAGCGACT
GGCACAGCCACATTCAAAGGCTACGGTGACGATGGCGCATACGATGAAGA
GCCTGCTGGAGCGTTCAGTACGCTACGCATTGAAGACAAGAAACAAGTTG
ACCTTCTTGGCGATAGCGACGACCAGACCAACAGACCTGCCGATGGTCTC
GGAGGCGATGACGACGAATTCGATCCGCGTGGCGCAGGGAATCCCACGCA
AACAGACGCGGAGCAAGAAGACGATCTACTTGCACTCGCGCTTTCAGGAC
CGGATGTCGCACCCCCGCCAGCCCTGTCTTCGTCAAATGGCGCCATGAAG
ACCTCGGAACTCATACAACAGCTCGCCGCCCAAAAGTCAAGCGCATTAGT
GCCAGTGCAACACACGCACCAACCGAGTGACACCAGCGCTTTCAGCCCTC
CTACCCAAACTTTGAACACACCAGGCGTACAACACGCGACAAGTCCTGGG
TTTGCTGCGTTTAATGGGTTTGGGGCTGGCGTAGCGTCACCTGAAGCAAA
AGGGCCCGCGTCGATCCCCGTCAGATTGCAAAGAAAGGAAGAGGCAGATC
CATTCGGAGACTTATTGGATACAGCGAAAAAGAGTGGAGTGGTATGA