Gchil1954.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1954.t1
Unique NameGchil1954.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1276665..1277720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1954Gchil1954Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1276665..1277720 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1.start1Gchil1954.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1276665..1276667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1.CDS1Gchil1954.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1276665..1277720 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1.exon1Gchil1954.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1276665..1277720 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1.stop1Gchil1954.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1277718..1277720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1Gchil1954.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1276665..1277720 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MSRQAQSPPPSARFTLHDDDELGHFVELDESHEYHATSCPVSPPAPSAFS
SQAHAAPSSADTDVHAALLKKLVARYPSLDLDALNSLLIACHDDIDAASA
LVDADSSVSSADDAALAASLQQRENRAVARRHRSNGAFFALEQPQMENLV
TTLRDIVVPALHAHFEELVLPDTNNQTASIAYSLKHLQVTALSLPKVTVR
PAPDRKFVFVNVLDAQLELHLGQWQYEGQGIVPIKDEGQAHFSVQGLNIL
LKLQPRWSYNGGSRIVVTDCQVTVDGVVRFKTYAAGANWAYNAVALVLKP
LVLSYVKEAVADNVTRALSLYLREWSCSAPLDTSRASRATSAPQAPVTAA
E*
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spliced messenger RNA

>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1276665..1277720+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCAAGCTCAGTCGCCGCCGCCGTCAGCGCGTTTCACGCTGCA
TGACGATGACGAACTCGGCCACTTTGTCGAGCTTGACGAGTCCCATGAAT
ATCACGCTACCTCGTGCCCCGTGTCTCCGCCCGCGCCGTCGGCTTTTTCC
TCTCAGGCCCACGCCGCGCCTAGTTCCGCCGACACGGATGTTCACGCTGC
TCTGCTCAAAAAGCTTGTTGCCAGATACCCGTCGTTGGACCTGGACGCCC
TCAACTCACTTCTGATTGCCTGTCATGATGATATTGACGCCGCTAGTGCG
CTCGTTGATGCAGACAGTTCCGTGTCATCGGCCGACGATGCTGCGCTCGC
GGCTTCGCTTCAGCAGCGAGAGAATCGTGCCGTTGCTCGGCGTCATCGCA
GCAACGGCGCTTTCTTCGCGCTGGAACAACCGCAAATGGAAAACTTGGTA
ACCACGCTCAGGGATATAGTTGTCCCTGCTCTGCATGCTCACTTTGAGGA
GTTGGTGCTTCCAGATACAAACAACCAGACGGCTTCCATTGCATACAGCT
TGAAACATTTGCAGGTTACGGCCCTATCACTACCAAAAGTTACCGTTCGT
CCCGCTCCTGATCGAAAGTTTGTTTTCGTCAACGTCTTAGATGCTCAGCT
TGAATTGCACCTCGGTCAATGGCAGTACGAAGGCCAAGGAATCGTTCCAA
TCAAGGACGAGGGTCAAGCGCACTTTTCAGTCCAAGGGCTCAACATACTT
CTCAAGTTGCAGCCACGTTGGTCCTACAATGGAGGGTCGAGAATAGTTGT
TACTGATTGTCAAGTCACAGTTGACGGTGTAGTACGCTTCAAAACCTACG
CTGCGGGAGCAAACTGGGCCTATAATGCTGTCGCACTTGTGCTCAAACCA
TTGGTTTTATCCTATGTTAAGGAGGCTGTCGCAGATAATGTTACTCGCGC
GCTCTCGTTGTATCTAAGGGAATGGTCGTGCTCTGCACCTCTAGATACCT
CCCGTGCGTCTAGGGCAACCAGTGCGCCGCAAGCTCCAGTAACTGCGGCC
GAATAA
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protein sequence of Gchil1954.t1

>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MSRQAQSPPPSARFTLHDDDELGHFVELDESHEYHATSCPVSPPAPSAFS
SQAHAAPSSADTDVHAALLKKLVARYPSLDLDALNSLLIACHDDIDAASA
LVDADSSVSSADDAALAASLQQRENRAVARRHRSNGAFFALEQPQMENLV
TTLRDIVVPALHAHFEELVLPDTNNQTASIAYSLKHLQVTALSLPKVTVR
PAPDRKFVFVNVLDAQLELHLGQWQYEGQGIVPIKDEGQAHFSVQGLNIL
LKLQPRWSYNGGSRIVVTDCQVTVDGVVRFKTYAAGANWAYNAVALVLKP
LVLSYVKEAVADNVTRALSLYLREWSCSAPLDTSRASRATSAPQAPVTAA
E*
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mRNA from alignment at tig00004439_pilon:1276665..1277720+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1276665..1277720+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCAAGCTCAGTCGCCGCCGCCGTCAGCGCGTTTCACGCTGCA
TGACGATGACGAACTCGGCCACTTTGTCGAGCTTGACGAGTCCCATGAAT
ATCACGCTACCTCGTGCCCCGTGTCTCCGCCCGCGCCGTCGGCTTTTTCC
TCTCAGGCCCACGCCGCGCCTAGTTCCGCCGACACGGATGTTCACGCTGC
TCTGCTCAAAAAGCTTGTTGCCAGATACCCGTCGTTGGACCTGGACGCCC
TCAACTCACTTCTGATTGCCTGTCATGATGATATTGACGCCGCTAGTGCG
CTCGTTGATGCAGACAGTTCCGTGTCATCGGCCGACGATGCTGCGCTCGC
GGCTTCGCTTCAGCAGCGAGAGAATCGTGCCGTTGCTCGGCGTCATCGCA
GCAACGGCGCTTTCTTCGCGCTGGAACAACCGCAAATGGAAAACTTGGTA
ACCACGCTCAGGGATATAGTTGTCCCTGCTCTGCATGCTCACTTTGAGGA
GTTGGTGCTTCCAGATACAAACAACCAGACGGCTTCCATTGCATACAGCT
TGAAACATTTGCAGGTTACGGCCCTATCACTACCAAAAGTTACCGTTCGT
CCCGCTCCTGATCGAAAGTTTGTTTTCGTCAACGTCTTAGATGCTCAGCT
TGAATTGCACCTCGGTCAATGGCAGTACGAAGGCCAAGGAATCGTTCCAA
TCAAGGACGAGGGTCAAGCGCACTTTTCAGTCCAAGGGCTCAACATACTT
CTCAAGTTGCAGCCACGTTGGTCCTACAATGGAGGGTCGAGAATAGTTGT
TACTGATTGTCAAGTCACAGTTGACGGTGTAGTACGCTTCAAAACCTACG
CTGCGGGAGCAAACTGGGCCTATAATGCTGTCGCACTTGTGCTCAAACCA
TTGGTTTTATCCTATGTTAAGGAGGCTGTCGCAGATAATGTTACTCGCGC
GCTCTCGTTGTATCTAAGGGAATGGTCGTGCTCTGCACCTCTAGATACCT
CCCGTGCGTCTAGGGCAACCAGTGCGCCGCAAGCTCCAGTAACTGCGGCC
GAATAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1276665..1277720+

>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1276665..1277720+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCAAGCTCAGTCGCCGCCGCCGTCAGCGCGTTTCACGCTGCA
TGACGATGACGAACTCGGCCACTTTGTCGAGCTTGACGAGTCCCATGAAT
ATCACGCTACCTCGTGCCCCGTGTCTCCGCCCGCGCCGTCGGCTTTTTCC
TCTCAGGCCCACGCCGCGCCTAGTTCCGCCGACACGGATGTTCACGCTGC
TCTGCTCAAAAAGCTTGTTGCCAGATACCCGTCGTTGGACCTGGACGCCC
TCAACTCACTTCTGATTGCCTGTCATGATGATATTGACGCCGCTAGTGCG
CTCGTTGATGCAGACAGTTCCGTGTCATCGGCCGACGATGCTGCGCTCGC
GGCTTCGCTTCAGCAGCGAGAGAATCGTGCCGTTGCTCGGCGTCATCGCA
GCAACGGCGCTTTCTTCGCGCTGGAACAACCGCAAATGGAAAACTTGGTA
ACCACGCTCAGGGATATAGTTGTCCCTGCTCTGCATGCTCACTTTGAGGA
GTTGGTGCTTCCAGATACAAACAACCAGACGGCTTCCATTGCATACAGCT
TGAAACATTTGCAGGTTACGGCCCTATCACTACCAAAAGTTACCGTTCGT
CCCGCTCCTGATCGAAAGTTTGTTTTCGTCAACGTCTTAGATGCTCAGCT
TGAATTGCACCTCGGTCAATGGCAGTACGAAGGCCAAGGAATCGTTCCAA
TCAAGGACGAGGGTCAAGCGCACTTTTCAGTCCAAGGGCTCAACATACTT
CTCAAGTTGCAGCCACGTTGGTCCTACAATGGAGGGTCGAGAATAGTTGT
TACTGATTGTCAAGTCACAGTTGACGGTGTAGTACGCTTCAAAACCTACG
CTGCGGGAGCAAACTGGGCCTATAATGCTGTCGCACTTGTGCTCAAACCA
TTGGTTTTATCCTATGTTAAGGAGGCTGTCGCAGATAATGTTACTCGCGC
GCTCTCGTTGTATCTAAGGGAATGGTCGTGCTCTGCACCTCTAGATACCT
CCCGTGCGTCTAGGGCAACCAGTGCGCCGCAAGCTCCAGTAACTGCGGCC
GAATAA
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