Gchil1954.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1954.t1
Unique NameGchil1954.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Homology
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BLAST of Gchil1954.t1 vs. uniprot
Match: A0A2V3IET1_9FLOR (BPI1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IET1_9FLOR)

HSP 1 Score: 398 bits (1023), Expect = 1.650e-135
Identity = 222/350 (63.43%), Postives = 266/350 (76.00%), Query Frame = 0 
Query:   12 ARFTLHDDDELGHFVELDESHEYHATSC---------PVSPPAPSAFSSQAHAAPSSADTDVHAALLKKLVARYPSLDLDALNSLLIACHDDIDAASALVDADSSVSSADDAALAASLQQRENRAVARRHRSNGAFFALEQPQMENLVTTLRDIVVPALHAHFEELVLPDTNNQTASIAYSLKHLQVTALSLPKVTVRPAPDRKFVFVNVLDAQLELHLGQWQYEGQGIVPIKDEGQAHFSVQGLNILLKLQPRWSYNGGSRIVVTDCQVTVDGVVRFKTYAAGANWAYNAVALVLKPLVLSYVKEAVADNVTRALSLYLREWSCSAPLDTSRASRAT-SAPQAPVTAAE 351
            ARFTLHD    G F ELDES +Y  T+          P  P AP+  +S     P       H +LL KLV RYPSLD D L +LL++C +DIDAAS LV+ D++ SSADDA LAASLQ+RENR  + RHR N A F L+  QM++LV+TL+ IVVPALHAHFEELVLPDT +QTASI YSL+H+QVTALSLP VTVRPAPDRK VF+ VL+AQLELH+G W+YE +GIVP+ D GQA  SVQGL ILLKL+PRWS++G +RI V++C VTVDGV RFKTY A A+WAY+A+ALVLKPLVLSYVKEA+AD+V+RAL+LYLR+WSCS  LD S  S A+ SA QA +TAAE
Sbjct:    5 ARFTLHD----GDFAELDESADYETTASAAPGPVVARPALPSAPNLSASSPQ--PVQHPAQPHQSLLSKLVRRYPSLDKDVLTALLVSCDNDIDAASTLVEGDTNASSADDALLAASLQERENRRASVRHRRNNAVFPLQPFQMDSLVSTLKHIVVPALHAHFEELVLPDTTDQTASILYSLQHVQVTALSLPNVTVRPAPDRKSVFLTVLNAQLELHVGSWKYESRGIVPVNDAGQARLSVQGLTILLKLEPRWSHDGTARINVSECNVTVDGVTRFKTYGAKADWAYSAIALVLKPLVLSYVKEAIADSVSRALALYLRQWSCSRTLDASPGSTASPSATQAQLTAAE 348
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BLAST of Gchil1954.t1 vs. uniprot
Match: R7QPP0_CHOCR (BPI1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP0_CHOCR)

HSP 1 Score: 212 bits (539), Expect = 2.880e-64
Identity = 108/211 (51.18%), Postives = 149/211 (70.62%), Query Frame = 0 
Query:  149 LVTTLRDIVVPALHAHFEELVLPDTNNQTASIAYSLKHLQVTALSLP--KVTVRPAPDRKFVFVNVLDAQLELHLGQWQYEGQGIVPIKDEGQAHFSVQGLNILLKLQPRWSYNGGSRIVVTDCQVTVDGVVRFKTYAAGANWAYNAVALVLKPLVLSYVKEAVADNVTRALSLYLREWSCSAPLDT--SRASRAT----SAPQAPVTAAE 351
            +V TLR+IVVPAL AHFEELVLPDT + +  + Y L+  QV+ LSLP   + V+P  D K + V+V++  LEL +G+W YE +G VP+KD G A  SV G++I + L+PRWS+ GG+++V+ DC VT+DG VRF T  A A+WAY A+ +VLKPLV+SY+KEA+AD V++ L+ +L +W+ S  LD   +RA R      S PQ+ VTAAE
Sbjct:    1 MVDTLREIVVPALRAHFEELVLPDTKDTSVGVEYELQRFQVSNLSLPPENIHVKPTTDGKLIRVSVVNTFLELEVGRWSYESKGFVPVKDAGTARVSVNGMSISVMLEPRWSHGGGTKVVIADCVVTIDGKVRFATEGAVADWAYKAITVVLKPLVVSYIKEAIADTVSKTLAFHLSQWAFSRSLDDQPARAQRTEPQRPSTPQSTVTAAE 211
The following BLAST results are available for this feature:
BLAST of Gchil1954.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IET1_9FLOR1.650e-13563.43BPI1 domain-containing protein n=1 Tax=Gracilariop... [more]
R7QPP0_CHOCR2.880e-6451.18BPI1 domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017942Lipid-binding serum glycoprotein, N-terminalPFAMPF01273LBP_BPI_CETPcoord: 157..319
e-value: 5.5E-12
score: 45.6
NoneNo IPR availableGENE3D3.15.10.10coord: 150..322
e-value: 6.6E-21
score: 76.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..56
IPR017943Bactericidal permeability-increasing protein, alpha/beta domain superfamilySUPERFAMILY55394Bactericidal permeability-increasing protein, BPIcoord: 153..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1276665..1277720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1954.t1Gchil1954.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1276665..1277720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1954.t1 ID=Gchil1954.t1|Name=Gchil1954.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MSRQAQSPPPSARFTLHDDDELGHFVELDESHEYHATSCPVSPPAPSAFS
SQAHAAPSSADTDVHAALLKKLVARYPSLDLDALNSLLIACHDDIDAASA
LVDADSSVSSADDAALAASLQQRENRAVARRHRSNGAFFALEQPQMENLV
TTLRDIVVPALHAHFEELVLPDTNNQTASIAYSLKHLQVTALSLPKVTVR
PAPDRKFVFVNVLDAQLELHLGQWQYEGQGIVPIKDEGQAHFSVQGLNIL
LKLQPRWSYNGGSRIVVTDCQVTVDGVVRFKTYAAGANWAYNAVALVLKP
LVLSYVKEAVADNVTRALSLYLREWSCSAPLDTSRASRATSAPQAPVTAA
E*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017942Lipid-bd_serum_glycop_N
IPR017943Bactericidal_perm-incr_a/b_dom