Gchil1967.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1967.t1
Unique NameGchil1967.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length556
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1305572..1307239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1967Gchil1967Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1305572..1307239 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1967.t1.stop1Gchil1967.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1305572..1305574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1967.t1.CDS1Gchil1967.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1305572..1307239 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1967.t1.exon1Gchil1967.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1305572..1307239 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1967.t1.start1Gchil1967.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1307237..1307239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1967.t1Gchil1967.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1305572..1307239 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=556bp
MLAFGRLRSKLRAALDACDERKLKAIISQSPTSLPQSEDPLVIASCLEQV
RVTADLFIEACDYDTAFETAVDTRSALISAQVLPWTVAVLKNFAFDERVV
SRIALTLAHLAGGLEPRGEVGSAGAVDQLAIAWRSHPSCISIIQALISLS
TGHIDNISRFMRRRGITTAVNALNTPEIAQNTSLVEHILVLVGLCTICTP
DNRSEGAALVPAILGALKSRNHRKRIGVAKHAFRAIANIAECWTKEKAGY
DLGDKHSLVQLIITCWISTPNSRDMALAASWATAALYGNDRGVLEYIKPR
SRDLGPVLEKWRLNLRTVDFLATLHEAVQPEKVLRRIHEGSAIDAKASQR
MIEVVLDSSSDTHSSENEVDGSEPDHGTNAKHGEESSVSFDERSMKSDTL
ICDSDSDDNHSSPPEREYESFSKLNPMTCDSVPKEIDIVVDSGSEDEGSA
LAEATLCTRSTEERSTMTNNRQTRRRKRAINTEKEVRSEIIPDRQKEELV
DETPMRRSKRHRKPNPKYESRSRLLKRTKLEASPLVSCSFIVPPNQNYRL
LGSRR*
back to top

spliced messenger RNA

>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00004439_pilon:1305572..1307239- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCTTTTGGGCGTCTCAGGTCCAAGTTGCGCGCTGCCCTGGATGC
ATGTGATGAACGAAAGCTCAAAGCCATCATATCCCAGTCGCCCACTTCTC
TCCCGCAATCCGAAGATCCCCTTGTGATAGCAAGCTGTCTCGAACAAGTG
CGCGTGACCGCCGACCTCTTCATCGAGGCATGTGATTATGATACCGCGTT
TGAAACTGCTGTTGATACGCGTTCGGCTCTTATTTCTGCCCAAGTTCTGC
CATGGACCGTCGCCGTGCTCAAAAACTTCGCTTTCGACGAACGTGTAGTC
AGTCGCATCGCACTCACCCTCGCACATTTAGCTGGTGGGTTAGAACCTCG
CGGAGAGGTGGGGTCAGCAGGAGCAGTGGACCAACTTGCGATCGCATGGA
GGAGTCATCCGTCATGCATTTCCATTATCCAAGCACTTATATCTCTTTCC
ACTGGCCATATTGACAACATATCGCGATTCATGAGACGTCGTGGCATCAC
CACAGCTGTGAATGCACTCAATACCCCAGAAATTGCTCAAAACACATCGC
TTGTGGAGCATATCCTGGTCCTCGTCGGTCTTTGCACAATTTGCACGCCA
GATAACCGCAGCGAAGGCGCCGCGCTCGTTCCTGCGATCCTGGGGGCTTT
GAAAAGCAGAAACCATCGAAAACGAATCGGTGTGGCAAAGCATGCGTTCA
GAGCCATAGCGAACATAGCAGAATGTTGGACAAAGGAAAAAGCTGGTTAT
GATCTTGGTGATAAGCACAGTTTGGTGCAACTCATAATCACCTGTTGGAT
ATCAACTCCGAACTCACGAGACATGGCACTTGCAGCTTCGTGGGCAACAG
CTGCTCTTTACGGGAATGATCGGGGTGTCCTCGAGTACATCAAACCCCGT
TCCAGAGATCTTGGACCCGTACTTGAGAAATGGAGGCTCAATCTCAGAAC
AGTTGATTTCTTGGCGACCCTCCATGAAGCAGTTCAGCCAGAAAAGGTCC
TTCGCAGGATACATGAAGGTTCCGCCATTGATGCAAAAGCGTCACAGAGG
ATGATCGAGGTTGTGTTAGATTCGAGCTCCGACACGCATAGCTCAGAAAA
TGAAGTAGATGGCAGCGAGCCAGATCATGGGACAAATGCCAAGCACGGAG
AAGAATCTTCTGTTTCTTTCGACGAACGATCCATGAAAAGTGACACCTTA
ATTTGTGACTCTGATTCCGACGATAACCACAGCTCTCCTCCGGAACGTGA
GTACGAGTCCTTTTCAAAGTTGAACCCCATGACGTGCGATTCTGTACCTA
AAGAAATCGATATAGTAGTGGATTCTGGTTCTGAAGACGAAGGCAGCGCC
CTGGCTGAGGCAACACTTTGCACAAGATCGACGGAAGAGCGTTCTACCAT
GACCAACAACAGGCAGACAAGAAGACGGAAACGCGCAATAAACACGGAGA
AAGAAGTGCGCAGTGAGATTATTCCCGACAGGCAGAAGGAAGAATTAGTA
GATGAAACGCCCATGCGAAGGTCGAAGAGGCACAGAAAGCCCAATCCCAA
GTATGAGTCTAGGTCCCGCCTCCTAAAACGGACAAAATTGGAAGCATCAC
CACTGGTATCTTGCTCGTTCATAGTGCCTCCGAATCAGAACTATCGACTA
TTAGGTAGTCGACGGTAG
back to top

protein sequence of Gchil1967.t1

>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=556bp
MLAFGRLRSKLRAALDACDERKLKAIISQSPTSLPQSEDPLVIASCLEQV
RVTADLFIEACDYDTAFETAVDTRSALISAQVLPWTVAVLKNFAFDERVV
SRIALTLAHLAGGLEPRGEVGSAGAVDQLAIAWRSHPSCISIIQALISLS
TGHIDNISRFMRRRGITTAVNALNTPEIAQNTSLVEHILVLVGLCTICTP
DNRSEGAALVPAILGALKSRNHRKRIGVAKHAFRAIANIAECWTKEKAGY
DLGDKHSLVQLIITCWISTPNSRDMALAASWATAALYGNDRGVLEYIKPR
SRDLGPVLEKWRLNLRTVDFLATLHEAVQPEKVLRRIHEGSAIDAKASQR
MIEVVLDSSSDTHSSENEVDGSEPDHGTNAKHGEESSVSFDERSMKSDTL
ICDSDSDDNHSSPPEREYESFSKLNPMTCDSVPKEIDIVVDSGSEDEGSA
LAEATLCTRSTEERSTMTNNRQTRRRKRAINTEKEVRSEIIPDRQKEELV
DETPMRRSKRHRKPNPKYESRSRLLKRTKLEASPLVSCSFIVPPNQNYRL
LGSRR*
back to top

mRNA from alignment at tig00004439_pilon:1305572..1307239-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00004439_pilon:1305572..1307239- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCTTTTGGGCGTCTCAGGTCCAAGTTGCGCGCTGCCCTGGATGC
ATGTGATGAACGAAAGCTCAAAGCCATCATATCCCAGTCGCCCACTTCTC
TCCCGCAATCCGAAGATCCCCTTGTGATAGCAAGCTGTCTCGAACAAGTG
CGCGTGACCGCCGACCTCTTCATCGAGGCATGTGATTATGATACCGCGTT
TGAAACTGCTGTTGATACGCGTTCGGCTCTTATTTCTGCCCAAGTTCTGC
CATGGACCGTCGCCGTGCTCAAAAACTTCGCTTTCGACGAACGTGTAGTC
AGTCGCATCGCACTCACCCTCGCACATTTAGCTGGTGGGTTAGAACCTCG
CGGAGAGGTGGGGTCAGCAGGAGCAGTGGACCAACTTGCGATCGCATGGA
GGAGTCATCCGTCATGCATTTCCATTATCCAAGCACTTATATCTCTTTCC
ACTGGCCATATTGACAACATATCGCGATTCATGAGACGTCGTGGCATCAC
CACAGCTGTGAATGCACTCAATACCCCAGAAATTGCTCAAAACACATCGC
TTGTGGAGCATATCCTGGTCCTCGTCGGTCTTTGCACAATTTGCACGCCA
GATAACCGCAGCGAAGGCGCCGCGCTCGTTCCTGCGATCCTGGGGGCTTT
GAAAAGCAGAAACCATCGAAAACGAATCGGTGTGGCAAAGCATGCGTTCA
GAGCCATAGCGAACATAGCAGAATGTTGGACAAAGGAAAAAGCTGGTTAT
GATCTTGGTGATAAGCACAGTTTGGTGCAACTCATAATCACCTGTTGGAT
ATCAACTCCGAACTCACGAGACATGGCACTTGCAGCTTCGTGGGCAACAG
CTGCTCTTTACGGGAATGATCGGGGTGTCCTCGAGTACATCAAACCCCGT
TCCAGAGATCTTGGACCCGTACTTGAGAAATGGAGGCTCAATCTCAGAAC
AGTTGATTTCTTGGCGACCCTCCATGAAGCAGTTCAGCCAGAAAAGGTCC
TTCGCAGGATACATGAAGGTTCCGCCATTGATGCAAAAGCGTCACAGAGG
ATGATCGAGGTTGTGTTAGATTCGAGCTCCGACACGCATAGCTCAGAAAA
TGAAGTAGATGGCAGCGAGCCAGATCATGGGACAAATGCCAAGCACGGAG
AAGAATCTTCTGTTTCTTTCGACGAACGATCCATGAAAAGTGACACCTTA
ATTTGTGACTCTGATTCCGACGATAACCACAGCTCTCCTCCGGAACGTGA
GTACGAGTCCTTTTCAAAGTTGAACCCCATGACGTGCGATTCTGTACCTA
AAGAAATCGATATAGTAGTGGATTCTGGTTCTGAAGACGAAGGCAGCGCC
CTGGCTGAGGCAACACTTTGCACAAGATCGACGGAAGAGCGTTCTACCAT
GACCAACAACAGGCAGACAAGAAGACGGAAACGCGCAATAAACACGGAGA
AAGAAGTGCGCAGTGAGATTATTCCCGACAGGCAGAAGGAAGAATTAGTA
GATGAAACGCCCATGCGAAGGTCGAAGAGGCACAGAAAGCCCAATCCCAA
GTATGAGTCTAGGTCCCGCCTCCTAAAACGGACAAAATTGGAAGCATCAC
CACTGGTATCTTGCTCGTTCATAGTGCCTCCGAATCAGAACTATCGACTA
TTAGGTAGTCGACGGTAG
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1305572..1307239-

>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00004439_pilon:1305572..1307239- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCTTTTGGGCGTCTCAGGTCCAAGTTGCGCGCTGCCCTGGATGC
ATGTGATGAACGAAAGCTCAAAGCCATCATATCCCAGTCGCCCACTTCTC
TCCCGCAATCCGAAGATCCCCTTGTGATAGCAAGCTGTCTCGAACAAGTG
CGCGTGACCGCCGACCTCTTCATCGAGGCATGTGATTATGATACCGCGTT
TGAAACTGCTGTTGATACGCGTTCGGCTCTTATTTCTGCCCAAGTTCTGC
CATGGACCGTCGCCGTGCTCAAAAACTTCGCTTTCGACGAACGTGTAGTC
AGTCGCATCGCACTCACCCTCGCACATTTAGCTGGTGGGTTAGAACCTCG
CGGAGAGGTGGGGTCAGCAGGAGCAGTGGACCAACTTGCGATCGCATGGA
GGAGTCATCCGTCATGCATTTCCATTATCCAAGCACTTATATCTCTTTCC
ACTGGCCATATTGACAACATATCGCGATTCATGAGACGTCGTGGCATCAC
CACAGCTGTGAATGCACTCAATACCCCAGAAATTGCTCAAAACACATCGC
TTGTGGAGCATATCCTGGTCCTCGTCGGTCTTTGCACAATTTGCACGCCA
GATAACCGCAGCGAAGGCGCCGCGCTCGTTCCTGCGATCCTGGGGGCTTT
GAAAAGCAGAAACCATCGAAAACGAATCGGTGTGGCAAAGCATGCGTTCA
GAGCCATAGCGAACATAGCAGAATGTTGGACAAAGGAAAAAGCTGGTTAT
GATCTTGGTGATAAGCACAGTTTGGTGCAACTCATAATCACCTGTTGGAT
ATCAACTCCGAACTCACGAGACATGGCACTTGCAGCTTCGTGGGCAACAG
CTGCTCTTTACGGGAATGATCGGGGTGTCCTCGAGTACATCAAACCCCGT
TCCAGAGATCTTGGACCCGTACTTGAGAAATGGAGGCTCAATCTCAGAAC
AGTTGATTTCTTGGCGACCCTCCATGAAGCAGTTCAGCCAGAAAAGGTCC
TTCGCAGGATACATGAAGGTTCCGCCATTGATGCAAAAGCGTCACAGAGG
ATGATCGAGGTTGTGTTAGATTCGAGCTCCGACACGCATAGCTCAGAAAA
TGAAGTAGATGGCAGCGAGCCAGATCATGGGACAAATGCCAAGCACGGAG
AAGAATCTTCTGTTTCTTTCGACGAACGATCCATGAAAAGTGACACCTTA
ATTTGTGACTCTGATTCCGACGATAACCACAGCTCTCCTCCGGAACGTGA
GTACGAGTCCTTTTCAAAGTTGAACCCCATGACGTGCGATTCTGTACCTA
AAGAAATCGATATAGTAGTGGATTCTGGTTCTGAAGACGAAGGCAGCGCC
CTGGCTGAGGCAACACTTTGCACAAGATCGACGGAAGAGCGTTCTACCAT
GACCAACAACAGGCAGACAAGAAGACGGAAACGCGCAATAAACACGGAGA
AAGAAGTGCGCAGTGAGATTATTCCCGACAGGCAGAAGGAAGAATTAGTA
GATGAAACGCCCATGCGAAGGTCGAAGAGGCACAGAAAGCCCAATCCCAA
GTATGAGTCTAGGTCCCGCCTCCTAAAACGGACAAAATTGGAAGCATCAC
CACTGGTATCTTGCTCGTTCATAGTGCCTCCGAATCAGAACTATCGACTA
TTAGGTAGTCGACGGTAG
back to top