Gchil1967.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil1967.t1
Unique Name	Gchil1967.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	556

Homology

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BLAST of Gchil1967.t1 vs. uniprot
Match: A0A2V3IJ83_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ83_9FLOR)

HSP 1 Score: 366 bits (939), Expect = 5.850e-116
Identity = 178/319 (55.80%), Postives = 231/319 (72.41%), Query Frame = 0

Query:   11 LRAALDACDERKLKAIISQSPTSLPQSEDPLVIASCLEQVRVTADLFIEACDYDTAFETAVDTRSALISAQVLPWTVAVLKNFAFDERVVSRIALTLAHLAGGLEPRGEVGSAGAVDQLAIAWRSHPSCISIIQALISLSTGHIDNISRFMRRRGITTAVNALNTPEIAQNTSLVEHILVLVGLCTICTPDNRSEGAALVPAILGALKSRNHRKRIGVAKHAFRAIANIAECWTKEKAGYDLGDKHSLVQLIITCWISTPNSRDMALAASWATAALYGNDRGVLEYIKPRSRDLGPVLEKWRLNLRTVDFLATLHEAVQ 329
            LR AL  CD R LK+IIS  P++L  S+DP  IA CLE VRV AD+  +ACD++TAFE A+  RS LI A++LPW V+VL++FAFDER+ SR+AL LAH+  G E RGE+G AGAVDQ+AI W++HP+ I I+QALISL TGHIDNISR MRRRGI+TA+  L + + A N  L E +++LVGLCTIC PDN  EG++LVPAIL AL S   RK + VA+HA  AIAN+A+CW KE+AGY+LGD   LVQL+IT W S    +DMALAA+WA +ALY +D  V  ++K R ++   V+  W+ + RT   L  + +A +
Sbjct:   12 LRRALQNCDSRGLKSIISNLPSALLLSDDPGQIAQCLEHVRVVADVLADACDFNTAFEAAIYARSLLIQAKMLPWAVSVLESFAFDERIASRVALALAHVGIGAEARGEIGKAGAVDQIAIVWKAHPTSIPIVQALISLCTGHIDNISRLMRRRGISTAIKVLRSSQSATNVQLAEQVMILVGLCTICIPDNVKEGSSLVPAILHALNSSGKRKPVAVARHALIAIANMADCWVKERAGYELGDIERLVQLVITSWKSARTCKDMALAATWALSALYSHDTDVQIHVKRRGQEFSDVVSGWKTHSRTAALLTIIFDATK 330

The following BLAST results are available for this feature:

BLAST of Gchil1967.t1 vs. uniprot

BLAST of Gchil1967.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IJ83_9FLOR	5.850e-116	55.80	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 53..344 e-value: 5.0E-11 score: 43.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 354..426
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..417
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..526
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 476..508
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 72..242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1305572..1307239 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1967.t1	Gchil1967.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004439_pilon 1305572..1307239 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil1967.t1 ID=Gchil1967.t1|Name=Gchil1967.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=556bp
MLAFGRLRSKLRAALDACDERKLKAIISQSPTSLPQSEDPLVIASCLEQV
RVTADLFIEACDYDTAFETAVDTRSALISAQVLPWTVAVLKNFAFDERVV
SRIALTLAHLAGGLEPRGEVGSAGAVDQLAIAWRSHPSCISIIQALISLS
TGHIDNISRFMRRRGITTAVNALNTPEIAQNTSLVEHILVLVGLCTICTP
DNRSEGAALVPAILGALKSRNHRKRIGVAKHAFRAIANIAECWTKEKAGY
DLGDKHSLVQLIITCWISTPNSRDMALAASWATAALYGNDRGVLEYIKPR
SRDLGPVLEKWRLNLRTVDFLATLHEAVQPEKVLRRIHEGSAIDAKASQR
MIEVVLDSSSDTHSSENEVDGSEPDHGTNAKHGEESSVSFDERSMKSDTL
ICDSDSDDNHSSPPEREYESFSKLNPMTCDSVPKEIDIVVDSGSEDEGSA
LAEATLCTRSTEERSTMTNNRQTRRRKRAINTEKEVRSEIIPDRQKEELV
DETPMRRSKRHRKPNPKYESRSRLLKRTKLEASPLVSCSFIVPPNQNYRL
LGSRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold